Wall clock time and date at job start Fri Apr 10 2020 23:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50697 * 109.47281 * 2 1 4 4 O 1.21294 * 119.99860 * 359.97438 * 3 2 1 5 5 N 1.34774 * 120.00047 * 180.02562 * 3 2 1 6 6 C 1.40033 * 119.99963 * 175.39540 * 5 3 2 7 7 C 1.38905 * 119.98967 * 215.71688 * 6 5 3 8 8 C 1.38010 * 119.99989 * 180.23431 * 7 6 5 9 9 C 1.38947 * 119.99890 * 359.51115 * 8 7 6 10 10 N 1.39825 * 120.00757 * 180.27948 * 9 8 7 11 11 C 1.34776 * 120.00193 * 33.49686 * 10 9 8 12 12 O 1.21384 * 119.99838 * 5.09836 * 11 10 9 13 13 C 1.49334 * 119.99828 * 185.09237 * 11 10 9 14 14 O 1.21359 * 120.00049 * 359.97438 * 13 11 10 15 15 N 1.34780 * 119.99705 * 180.02562 * 13 11 10 16 16 C 1.46501 * 119.99937 * 180.02562 * 15 13 11 17 17 C 1.50695 * 109.47075 * 179.97438 * 16 15 13 18 18 H 1.08002 * 120.00296 * 359.97438 * 17 16 15 19 19 C 1.37871 * 120.00091 * 179.97438 * 17 16 15 20 20 N 1.31519 * 119.99935 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00208 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47158 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46874 * 119.99961 * 21 19 17 24 24 H 1.48500 * 109.46983 * 240.00142 * 21 19 17 25 25 C 1.38944 * 119.98498 * 0.25921 * 9 8 7 26 26 C 1.38012 * 119.99388 * 359.97438 * 25 9 8 27 27 H 1.09010 * 109.46864 * 300.00378 * 1 2 3 28 28 H 1.08995 * 109.46769 * 60.00002 * 1 2 3 29 29 H 1.08994 * 109.47563 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47040 * 239.99447 * 2 1 3 31 31 H 1.09004 * 109.46937 * 119.99870 * 2 1 3 32 32 H 0.97004 * 120.00371 * 355.38797 * 5 3 2 33 33 H 1.07992 * 120.00030 * 0.02562 * 7 6 5 34 34 H 1.08005 * 120.00238 * 179.79500 * 8 7 6 35 35 H 0.97005 * 119.99392 * 213.50116 * 10 9 8 36 36 H 0.97002 * 119.99533 * 359.97438 * 15 13 11 37 37 H 1.09002 * 109.46668 * 299.99513 * 16 15 13 38 38 H 1.08995 * 109.47002 * 59.99444 * 16 15 13 39 39 H 0.97000 * 119.99699 * 180.02562 * 20 19 17 40 40 H 1.08001 * 120.00034 * 180.02562 * 25 9 8 41 41 H 1.08009 * 119.99510 * 180.02562 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2442 2.3427 -0.0005 5 7 3.3575 1.6670 -0.0005 6 6 3.8249 2.9834 -0.0979 7 6 4.9874 3.2567 -0.8075 8 6 5.4509 4.5534 -0.8995 9 6 4.7493 5.5868 -0.2909 10 7 5.2156 6.9014 -0.3889 11 6 5.8503 7.3098 -1.5056 12 8 5.9358 6.5664 -2.4613 13 6 6.4481 8.6768 -1.5669 14 8 6.3621 9.4202 -0.6115 15 7 7.0824 9.0854 -2.6838 16 6 7.6694 10.4263 -2.7438 17 6 8.3145 10.6324 -4.0900 18 1 8.2902 9.8433 -4.8271 19 6 8.9359 11.8283 -4.3809 20 7 8.9661 12.7890 -3.4832 21 14 9.7363 12.0835 -6.0494 22 1 9.5655 10.8595 -6.8727 23 1 9.0951 13.2342 -6.7351 24 1 11.1839 12.3600 -5.8668 25 6 3.5840 5.3137 0.4148 26 6 3.1234 4.0162 0.5106 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 3.9874 0.9324 0.0666 33 1 5.5302 2.4541 -1.2843 34 1 6.3565 4.7655 -1.4484 35 1 5.0823 7.5193 0.3468 36 1 7.1508 8.4913 -3.4475 37 1 6.8879 11.1719 -2.5971 38 1 8.4212 10.5292 -1.9614 39 1 9.4029 13.6305 -3.6880 40 1 3.0382 6.1168 0.8876 41 1 2.2173 3.8040 1.0588 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427876588.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:59:01 Heat of formation + Delta-G solvation = -106.598169 kcal Electronic energy + Delta-G solvation = -24939.906513 eV Core-core repulsion = 21011.679433 eV Total energy + Delta-G solvation = -3928.227080 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.136 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.17559 -41.42483 -40.15012 -39.06348 -36.89224 -36.20591 -34.91479 -34.34735 -33.64340 -32.02957 -30.18795 -29.51105 -26.64078 -25.46379 -24.41022 -23.98746 -22.68617 -21.62238 -21.13075 -20.17113 -18.85743 -18.57529 -18.36084 -18.06656 -17.33664 -17.10583 -16.90870 -16.67251 -16.05286 -15.72491 -15.58019 -15.18571 -15.13226 -14.82361 -14.59782 -14.26141 -14.09656 -14.02222 -13.91607 -13.76705 -13.13578 -12.99866 -12.76836 -12.76414 -12.64261 -12.35384 -12.22162 -12.07987 -12.00340 -11.50955 -10.99889 -10.86350 -10.83758 -10.53008 -10.07280 -9.98649 -8.83944 -8.32172 -6.48279 -0.15801 0.35216 0.49604 1.24640 1.44104 1.44671 1.57803 1.58742 2.03558 2.11599 2.35641 2.68671 2.76276 3.03364 3.41393 3.69273 3.89302 3.94451 4.19652 4.28519 4.29226 4.38760 4.43688 4.66172 4.80006 4.96707 5.00557 5.02676 5.07816 5.16334 5.17817 5.24595 5.27941 5.31352 5.35029 5.45263 5.51099 5.76821 5.90917 5.98805 6.44891 6.45276 6.57052 6.71913 6.97847 7.16280 7.24810 8.79667 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.034487 B = 0.001934 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.703682 B =14476.481164 C =14880.763877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.133 4.133 3 C 0.502 3.498 4 O -0.567 6.567 5 N -0.661 5.661 6 C 0.126 3.874 7 C -0.116 4.116 8 C -0.114 4.114 9 C 0.112 3.888 10 N -0.633 5.633 11 C 0.520 3.480 12 O -0.516 6.516 13 C 0.494 3.506 14 O -0.558 6.558 15 N -0.671 5.671 16 C 0.262 3.738 17 C -0.562 4.562 18 H 0.080 0.920 19 C 0.010 3.990 20 N -0.925 5.925 21 Si 0.983 3.017 22 H -0.258 1.258 23 H -0.278 1.278 24 H -0.276 1.276 25 C -0.121 4.121 26 C -0.111 4.111 27 H 0.047 0.953 28 H 0.042 0.958 29 H 0.086 0.914 30 H 0.122 0.878 31 H 0.126 0.874 32 H 0.430 0.570 33 H 0.159 0.841 34 H 0.129 0.871 35 H 0.430 0.570 36 H 0.413 0.587 37 H 0.005 0.995 38 H 0.007 0.993 39 H 0.271 0.729 40 H 0.146 0.854 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.773 -29.551 8.578 32.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.172 4.172 3 C 0.293 3.707 4 O -0.445 6.445 5 N -0.308 5.308 6 C 0.031 3.969 7 C -0.136 4.136 8 C -0.135 4.135 9 C 0.018 3.982 10 N -0.280 5.280 11 C 0.302 3.698 12 O -0.391 6.391 13 C 0.274 3.726 14 O -0.438 6.438 15 N -0.321 5.321 16 C 0.140 3.860 17 C -0.599 4.599 18 H 0.098 0.902 19 C -0.190 4.190 20 N -0.563 5.563 21 Si 0.806 3.194 22 H -0.182 1.182 23 H -0.203 1.203 24 H -0.202 1.202 25 C -0.141 4.141 26 C -0.132 4.132 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.105 0.895 30 H 0.140 0.860 31 H 0.144 0.856 32 H 0.270 0.730 33 H 0.177 0.823 34 H 0.147 0.853 35 H 0.269 0.731 36 H 0.250 0.750 37 H 0.023 0.977 38 H 0.025 0.975 39 H 0.080 0.920 40 H 0.164 0.836 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -12.253 -28.733 8.571 32.391 hybrid contribution 0.712 0.743 -0.519 1.153 sum -11.541 -27.990 8.051 31.328 Atomic orbital electron populations 1.21568 0.93746 1.02746 1.01831 1.21707 0.97894 0.90351 1.07247 1.21849 0.81323 0.93613 0.73945 1.90715 1.56227 1.48031 1.49527 1.43521 1.08199 1.06576 1.72460 1.17867 0.95527 0.85589 0.97894 1.20973 0.96998 0.96761 0.98913 1.21058 1.00275 0.91795 1.00368 1.17942 0.95138 0.83001 1.02095 1.43072 1.54773 1.11963 1.18211 1.20074 0.79230 0.87321 0.83181 1.90741 1.57132 1.55511 1.35744 1.20177 0.80724 0.87654 0.84061 1.90719 1.60066 1.56288 1.36679 1.46150 1.52330 1.18171 1.15498 1.18859 0.92155 0.77696 0.97297 1.21598 1.37256 1.01539 0.99535 0.90184 1.25966 0.96145 0.95002 1.01915 1.70108 1.43788 1.05881 1.36536 0.85129 0.77767 0.78630 0.77825 1.18165 1.20313 1.20192 1.20979 0.93719 0.97996 1.01444 1.21100 1.00630 0.91550 0.99871 0.93413 0.93857 0.89544 0.86010 0.85588 0.73012 0.82320 0.85289 0.73094 0.75011 0.97668 0.97545 0.92048 0.83622 0.84470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 9.20 71.98 0.66 -0.61 16 2 C -0.13 -0.70 6.42 29.85 0.19 -0.51 16 3 C 0.50 7.23 7.67 87.66 0.67 7.90 16 4 O -0.57 -13.69 13.44 -3.07 -0.04 -13.73 16 5 N -0.66 -7.59 5.34 -303.38 -1.62 -9.21 16 6 C 0.13 2.33 6.30 38.15 0.24 2.57 16 7 C -0.12 -2.12 9.96 22.38 0.22 -1.90 16 8 C -0.11 -2.78 8.65 22.39 0.19 -2.59 16 9 C 0.11 2.85 6.28 38.21 0.24 3.09 16 10 N -0.63 -17.51 5.33 -304.75 -1.62 -19.13 16 11 C 0.52 17.63 7.62 87.23 0.66 18.30 16 12 O -0.52 -18.51 14.16 -3.35 -0.05 -18.56 16 13 C 0.49 20.11 7.89 87.23 0.69 20.80 16 14 O -0.56 -25.23 16.48 -3.27 -0.05 -25.29 16 15 N -0.67 -29.52 5.54 -468.26 -2.59 -32.12 16 16 C 0.26 14.03 5.43 85.63 0.46 14.49 16 17 C -0.56 -30.48 9.28 25.60 0.24 -30.24 16 18 H 0.08 4.04 7.60 -2.91 -0.02 4.02 16 19 C 0.01 0.55 5.46 84.65 0.46 1.01 16 20 N -0.92 -54.32 13.29 21.45 0.28 -54.04 16 21 Si 0.98 42.23 29.54 68.60 2.03 44.26 16 22 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 23 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 24 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 25 C -0.12 -2.69 9.96 22.39 0.22 -2.46 16 26 C -0.11 -2.41 8.69 22.37 0.19 -2.22 16 27 H 0.05 0.57 8.10 -2.38 -0.02 0.55 16 28 H 0.04 0.56 8.10 -2.39 -0.02 0.54 16 29 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.12 0.10 8.14 -2.39 -0.02 0.08 16 31 H 0.13 -0.03 8.14 -2.39 -0.02 -0.05 16 32 H 0.43 1.38 8.82 -92.71 -0.82 0.56 16 33 H 0.16 1.88 8.06 -2.91 -0.02 1.86 16 34 H 0.13 3.45 6.41 -2.91 -0.02 3.43 16 35 H 0.43 10.55 8.30 -92.70 -0.77 9.78 16 36 H 0.41 16.59 7.79 -92.71 -0.72 15.87 16 37 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 38 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 39 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 40 H 0.15 2.70 8.06 -2.91 -0.02 2.68 16 41 H 0.14 3.14 6.25 -2.91 -0.02 3.12 16 Total: -1.00 -74.82 359.72 0.49 -74.33 By element: Atomic # 1 Polarization: 27.05 SS G_CDS: -1.20 Total: 25.85 kcal Atomic # 6 Polarization: 22.28 SS G_CDS: 5.36 Total: 27.63 kcal Atomic # 7 Polarization: -108.94 SS G_CDS: -5.55 Total: -114.50 kcal Atomic # 8 Polarization: -57.43 SS G_CDS: -0.14 Total: -57.58 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Total: -74.82 0.49 -74.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427876588.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.270 kcal (2) G-P(sol) polarization free energy of solvation -74.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds