Wall clock time and date at job start Fri Apr 10 2020 23:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21297 * 119.99656 * 2 1 4 4 N 1.34769 * 120.00478 * 180.02562 * 2 1 3 5 5 C 1.39933 * 120.00397 * 184.92363 * 4 2 1 6 6 C 1.38952 * 120.02811 * 324.38234 * 5 4 2 7 7 C 1.38148 * 120.08264 * 180.02562 * 6 5 4 8 8 C 1.38167 * 120.14201 * 359.97438 * 7 6 5 9 9 C 1.38956 * 120.06605 * 359.97438 * 8 7 6 10 10 N 1.39720 * 120.03833 * 179.97438 * 9 8 7 11 11 C 1.34784 * 119.99606 * 144.35752 * 10 9 8 12 12 O 1.21373 * 120.00058 * 4.59750 * 11 10 9 13 13 C 1.49353 * 119.99814 * 184.60094 * 11 10 9 14 14 O 1.21359 * 120.00217 * 359.97438 * 13 11 10 15 15 N 1.34775 * 120.00289 * 180.02562 * 13 11 10 16 16 C 1.46497 * 120.00528 * 180.02562 * 15 13 11 17 17 H 1.09007 * 109.46851 * 324.99670 * 16 15 13 18 18 C 1.52998 * 109.47369 * 84.99667 * 16 15 13 19 19 C 1.50700 * 109.47052 * 204.99842 * 16 15 13 20 20 H 1.07995 * 120.00085 * 355.38165 * 19 16 15 21 21 C 1.37876 * 119.99761 * 175.37846 * 19 16 15 22 22 N 1.31513 * 120.00425 * 353.02869 * 21 19 16 23 23 Si 1.86803 * 119.99752 * 173.29968 * 21 19 16 24 24 H 1.48504 * 109.46891 * 264.76264 * 23 21 19 25 25 H 1.48497 * 109.47094 * 24.76365 * 23 21 19 26 26 H 1.48500 * 109.47325 * 144.76637 * 23 21 19 27 27 C 1.38708 * 120.03631 * 144.62727 * 5 4 2 28 28 H 1.09000 * 109.47049 * 269.99810 * 1 2 3 29 29 H 1.08995 * 109.47243 * 29.99851 * 1 2 3 30 30 H 1.09007 * 109.46599 * 150.00249 * 1 2 3 31 31 H 0.96995 * 120.00297 * 4.91579 * 4 2 1 32 32 H 1.08004 * 119.95740 * 359.97438 * 6 5 4 33 33 H 1.07998 * 119.92763 * 179.97438 * 7 6 5 34 34 H 1.08004 * 119.96218 * 180.02562 * 8 7 6 35 35 H 0.97000 * 120.00968 * 324.35912 * 10 9 8 36 36 H 0.97007 * 119.99610 * 359.97438 * 15 13 11 37 37 H 1.08999 * 109.46795 * 178.58143 * 18 16 15 38 38 H 1.09002 * 109.46879 * 298.58553 * 18 16 15 39 39 H 1.09003 * 109.46990 * 58.58031 * 18 16 15 40 40 H 0.96996 * 120.00292 * 180.26978 * 22 21 19 41 41 H 1.08005 * 120.07195 * 0.02562 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0505 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 3.5764 -1.1693 0.1035 6 6 4.3203 -0.1630 -0.5004 7 6 5.6981 -0.1645 -0.3989 8 6 6.3410 -1.1656 0.3035 9 6 5.6029 -2.1743 0.9107 10 7 6.2536 -3.1867 1.6205 11 6 5.6890 -3.7011 2.7310 12 8 4.5787 -3.3449 3.0680 13 6 6.4296 -4.7092 3.5469 14 8 7.5396 -5.0657 3.2097 15 7 5.8649 -5.2240 4.6571 16 6 6.5916 -6.2125 5.4578 17 1 7.1839 -6.8484 4.7998 18 6 7.5174 -5.4922 6.4400 19 6 5.6082 -7.0596 6.2234 20 1 4.5531 -6.8327 6.1823 21 6 6.0554 -8.1245 6.9764 22 7 7.3187 -8.4859 6.9192 23 14 4.8654 -9.0588 8.0721 24 1 4.9346 -8.5170 9.4531 25 1 3.4846 -8.9041 7.5482 26 1 5.2312 -10.4980 8.0862 27 6 4.2187 -2.1788 0.8052 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8899 -0.5138 30 1 -0.3633 -0.8901 -0.5138 31 1 1.6988 -2.0056 -0.0729 32 1 3.8208 0.6207 -1.0506 33 1 6.2738 0.6187 -0.8696 34 1 7.4182 -1.1637 0.3814 35 1 7.1117 -3.5195 1.3141 36 1 4.9775 -4.9393 4.9265 37 1 8.0393 -6.2271 7.0529 38 1 8.2447 -4.8991 5.8855 39 1 6.9277 -4.8371 7.0814 40 1 7.6325 -9.2374 7.4460 41 1 3.6429 -2.9645 1.2718 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000438868899.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:59:11 Heat of formation + Delta-G solvation = -75.634997 kcal Electronic energy + Delta-G solvation = -25634.104924 eV Core-core repulsion = 21707.220508 eV Total energy + Delta-G solvation = -3926.884416 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.136 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.05219 -40.33702 -38.84957 -37.80852 -35.66542 -35.04004 -34.20935 -32.43640 -31.12155 -30.12703 -29.24713 -28.66664 -25.38494 -24.96988 -22.99784 -22.79365 -21.16163 -20.37855 -19.69601 -18.89782 -17.94189 -17.39687 -16.49036 -16.37466 -16.13027 -15.89339 -15.52256 -15.31084 -15.15603 -14.50763 -14.29559 -14.13312 -13.78291 -13.46251 -13.27494 -13.10182 -12.92715 -12.59475 -12.50613 -12.20570 -11.94831 -11.89859 -11.31969 -11.14129 -11.11224 -10.86699 -10.71986 -10.45658 -10.34125 -10.31988 -10.00894 -9.23119 -9.11205 -8.63664 -8.59567 -8.21307 -8.15803 -6.22715 -4.29891 1.00113 1.15537 1.83906 2.26693 2.56832 2.83822 3.21167 3.28602 3.31138 3.53506 3.73696 4.04167 4.30702 4.36390 4.74600 4.81086 4.98055 4.99760 5.02681 5.11768 5.11968 5.26676 5.32182 5.44469 5.49183 6.05241 6.06152 6.19091 6.27711 6.37206 6.64049 6.75142 6.85507 6.93360 7.03971 7.08355 7.15885 7.34433 7.56959 7.67958 7.78004 7.85924 7.92956 8.38512 8.57101 8.80884 9.36377 10.85533 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.018693 B = 0.002578 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.521152 B =10858.553575 C =12080.244389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.511 3.489 3 O -0.528 6.528 4 N -0.672 5.672 5 C 0.155 3.845 6 C -0.135 4.135 7 C -0.085 4.085 8 C -0.153 4.153 9 C 0.164 3.836 10 N -0.651 5.651 11 C 0.508 3.492 12 O -0.506 6.506 13 C 0.495 3.505 14 O -0.534 6.534 15 N -0.667 5.667 16 C 0.260 3.740 17 H 0.060 0.940 18 C -0.144 4.144 19 C -0.539 4.539 20 H 0.065 0.935 21 C 0.069 3.931 22 N -0.882 5.882 23 Si 0.902 3.098 24 H -0.279 1.279 25 H -0.272 1.272 26 H -0.285 1.285 27 C -0.145 4.145 28 H 0.099 0.901 29 H 0.096 0.904 30 H 0.083 0.917 31 H 0.412 0.588 32 H 0.138 0.862 33 H 0.130 0.870 34 H 0.130 0.870 35 H 0.424 0.576 36 H 0.402 0.598 37 H 0.081 0.919 38 H 0.020 0.980 39 H 0.032 0.968 40 H 0.266 0.734 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.967 13.939 -15.576 22.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.300 3.700 3 O -0.404 6.404 4 N -0.317 5.317 5 C 0.061 3.939 6 C -0.156 4.156 7 C -0.104 4.104 8 C -0.174 4.174 9 C 0.069 3.931 10 N -0.298 5.298 11 C 0.291 3.709 12 O -0.379 6.379 13 C 0.273 3.727 14 O -0.412 6.412 15 N -0.316 5.316 16 C 0.159 3.841 17 H 0.078 0.922 18 C -0.203 4.203 19 C -0.577 4.577 20 H 0.083 0.917 21 C -0.135 4.135 22 N -0.518 5.518 23 Si 0.730 3.270 24 H -0.205 1.205 25 H -0.197 1.197 26 H -0.210 1.210 27 C -0.167 4.167 28 H 0.117 0.883 29 H 0.115 0.885 30 H 0.101 0.899 31 H 0.248 0.752 32 H 0.156 0.844 33 H 0.148 0.852 34 H 0.148 0.852 35 H 0.263 0.737 36 H 0.236 0.764 37 H 0.099 0.901 38 H 0.039 0.961 39 H 0.051 0.949 40 H 0.076 0.924 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -8.460 14.487 -15.376 22.756 hybrid contribution -0.794 -1.029 0.697 1.475 sum -9.254 13.458 -14.678 21.959 Atomic orbital electron populations 1.21892 0.90625 1.05192 1.05346 1.21014 0.90914 0.83088 0.75017 1.90734 1.70451 1.31275 1.47908 1.43594 1.05242 1.10080 1.72808 1.17524 0.82576 0.96741 0.97065 1.21233 0.93705 0.99641 1.00976 1.20825 0.93871 0.97623 0.98109 1.20978 1.00239 0.94184 1.02036 1.17433 0.91302 0.89526 0.94840 1.43216 1.24899 1.36403 1.25266 1.20995 0.86417 0.82415 0.81034 1.90720 1.18781 1.58960 1.69450 1.19646 0.86697 0.83109 0.83225 1.90737 1.19242 1.60753 1.70518 1.46496 1.20615 1.41167 1.23329 1.18993 0.91423 0.84622 0.89016 0.92219 1.22040 0.98656 0.99796 0.99790 1.21165 0.93452 1.13332 1.29757 0.91723 1.24883 0.95506 0.96423 0.96666 1.69955 1.14596 1.27334 1.39949 0.86417 0.80970 0.78911 0.80748 1.20451 1.19703 1.21037 1.20981 0.93738 1.01463 1.00537 0.88293 0.88511 0.89852 0.75155 0.84441 0.85177 0.85232 0.73738 0.76351 0.90075 0.96060 0.94880 0.92417 0.83869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.84 10.31 36.01 0.37 -0.47 16 2 C 0.51 4.87 7.78 -10.99 -0.09 4.78 16 3 O -0.53 -7.16 14.56 5.54 0.08 -7.08 16 4 N -0.67 -6.07 5.33 -9.88 -0.05 -6.13 16 5 C 0.16 1.83 6.29 -83.72 -0.53 1.30 16 6 C -0.13 -1.57 8.69 -39.35 -0.34 -1.91 16 7 C -0.09 -0.88 10.03 -39.64 -0.40 -1.27 16 8 C -0.15 -1.66 9.96 -39.34 -0.39 -2.05 16 9 C 0.16 2.10 6.28 -83.78 -0.53 1.58 16 10 N -0.65 -8.83 5.32 -10.31 -0.05 -8.88 16 11 C 0.51 8.44 7.72 -11.63 -0.09 8.35 16 12 O -0.51 -8.94 13.96 5.48 0.08 -8.86 16 13 C 0.49 9.68 7.85 -11.63 -0.09 9.59 16 14 O -0.53 -11.52 16.14 5.49 0.09 -11.43 16 15 N -0.67 -13.99 5.06 -55.40 -0.28 -14.27 16 16 C 0.26 6.42 2.43 -69.09 -0.17 6.26 16 17 H 0.06 1.67 7.56 -51.93 -0.39 1.28 16 18 C -0.14 -3.42 9.33 37.16 0.35 -3.08 16 19 C -0.54 -14.00 8.67 -34.44 -0.30 -14.30 16 20 H 0.06 1.62 7.73 -52.49 -0.41 1.22 16 21 C 0.07 1.83 5.23 -17.82 -0.09 1.73 16 22 N -0.88 -24.31 11.98 55.43 0.66 -23.64 16 23 Si 0.90 20.28 29.54 -169.99 -5.02 15.26 16 24 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 25 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 26 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 27 C -0.14 -1.87 8.60 -39.19 -0.34 -2.21 16 28 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.21 8.14 -51.93 -0.42 -0.22 16 31 H 0.41 2.45 8.82 -40.82 -0.36 2.09 16 32 H 0.14 1.64 6.25 -52.48 -0.33 1.31 16 33 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 34 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 35 H 0.42 5.07 8.30 -40.82 -0.34 4.73 16 36 H 0.40 7.83 8.00 -40.82 -0.33 7.50 16 37 H 0.08 2.07 6.70 -51.93 -0.35 1.72 16 38 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 41 H 0.14 1.95 6.29 -52.48 -0.33 1.62 16 LS Contribution 357.18 15.07 5.38 5.38 Total: -1.00 -32.58 357.18 -6.67 -39.25 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -4.92 Total: 12.11 kcal Atomic # 6 Polarization: 10.92 SS G_CDS: -2.63 Total: 8.29 kcal Atomic # 7 Polarization: -53.19 SS G_CDS: 0.28 Total: -52.92 kcal Atomic # 8 Polarization: -27.62 SS G_CDS: 0.25 Total: -27.38 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.58 -6.67 -39.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000438868899.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.387 kcal (2) G-P(sol) polarization free energy of solvation -32.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds