Wall clock time and date at job start Fri Apr 10 2020 23:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21290 * 120.00592 * 2 1 4 4 N 1.34779 * 119.99663 * 180.02562 * 2 1 3 5 5 C 1.40030 * 120.00372 * 175.38221 * 4 2 1 6 6 C 1.38895 * 119.99911 * 215.09468 * 5 4 2 7 7 C 1.38007 * 120.00876 * 180.02562 * 6 5 4 8 8 C 1.38942 * 119.99228 * 0.02562 * 7 6 5 9 9 N 1.39836 * 120.00448 * 179.97438 * 8 7 6 10 10 C 1.34777 * 119.99811 * 35.10987 * 9 8 7 11 11 O 1.21390 * 120.00210 * 355.38330 * 10 9 8 12 12 C 1.49334 * 119.99933 * 175.38205 * 10 9 8 13 13 O 1.21353 * 120.00200 * 359.97438 * 12 10 9 14 14 N 1.34777 * 119.99933 * 179.97438 * 12 10 9 15 15 C 1.46501 * 120.00197 * 180.02562 * 14 12 10 16 16 H 1.09000 * 109.46519 * 35.00137 * 15 14 12 17 17 C 1.52998 * 109.47077 * 274.99775 * 15 14 12 18 18 C 1.50696 * 109.47157 * 154.99595 * 15 14 12 19 19 H 1.07997 * 120.00251 * 0.02562 * 18 15 14 20 20 C 1.37881 * 120.00098 * 179.97438 * 18 15 14 21 21 N 1.31514 * 120.00384 * 179.72790 * 20 18 15 22 22 Si 1.86797 * 119.99585 * 0.02562 * 20 18 15 23 23 H 1.48501 * 109.47174 * 269.72283 * 22 20 18 24 24 H 1.48501 * 109.47368 * 29.72676 * 22 20 18 25 25 H 1.48506 * 109.47037 * 149.72393 * 22 20 18 26 26 C 1.38941 * 119.99293 * 0.25081 * 8 7 6 27 27 C 1.38013 * 119.99164 * 359.49444 * 26 8 7 28 28 H 1.09003 * 109.47061 * 270.00738 * 1 2 3 29 29 H 1.09006 * 109.46928 * 29.99720 * 1 2 3 30 30 H 1.08991 * 109.47284 * 149.99784 * 1 2 3 31 31 H 0.97008 * 120.00293 * 355.37709 * 4 2 1 32 32 H 1.07998 * 119.99477 * 0.02562 * 6 5 4 33 33 H 1.08003 * 120.00833 * 179.97438 * 7 6 5 34 34 H 0.96995 * 120.00263 * 215.10334 * 9 8 7 35 35 H 0.97003 * 119.99802 * 0.02562 * 14 12 10 36 36 H 1.09002 * 109.47244 * 179.97438 * 17 15 14 37 37 H 1.08991 * 109.47479 * 300.00165 * 17 15 14 38 38 H 1.09002 * 109.46961 * 59.99738 * 17 15 14 39 39 H 0.96991 * 120.00360 * 180.27705 * 21 20 18 40 40 H 1.08000 * 120.00715 * 179.72010 * 26 8 7 41 41 H 1.07998 * 119.99831 * 180.25338 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0503 0.0000 4 7 2.1808 -1.1673 -0.0005 5 6 3.5777 -1.1694 -0.0982 6 6 4.2235 -2.1813 -0.7967 7 6 5.6002 -2.1839 -0.8926 8 6 6.3403 -1.1743 -0.2898 9 7 7.7354 -1.1769 -0.3863 10 6 8.3321 -1.6164 -1.5121 11 8 7.6637 -2.0877 -2.4091 12 6 9.8156 -1.5235 -1.6559 13 8 10.4838 -1.0518 -0.7594 14 7 10.4123 -1.9634 -2.7814 15 6 11.8677 -1.8728 -2.9224 16 1 12.3376 -2.0387 -1.9529 17 6 12.2444 -0.4835 -3.4408 18 6 12.3441 -2.9188 -3.8970 19 1 11.6338 -3.5843 -4.3649 20 6 13.6867 -3.0257 -4.1920 21 7 14.1032 -3.9420 -5.0385 22 14 14.9152 -1.8742 -3.3831 23 1 15.0867 -0.6629 -4.2249 24 1 14.4142 -1.4785 -2.0424 25 1 16.2214 -2.5659 -3.2391 26 6 5.6945 -0.1652 0.4138 27 6 4.3174 -0.1602 0.5050 28 1 -0.3633 0.0001 1.0277 29 1 -0.3633 0.8901 -0.5138 30 1 -0.3633 -0.8899 -0.5138 31 1 1.6981 -2.0060 0.0668 32 1 3.6482 -2.9663 -1.2649 33 1 6.1024 -2.9710 -1.4355 34 1 8.2736 -0.8624 0.3568 35 1 9.8781 -2.3401 -3.4982 36 1 13.3273 -0.4159 -3.5452 37 1 11.7745 -0.3176 -4.4101 38 1 11.8998 0.2731 -2.7358 39 1 15.0481 -4.0198 -5.2430 40 1 6.2699 0.6173 0.8863 41 1 3.8151 0.6264 1.0484 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000438884956.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:59:13 Heat of formation + Delta-G solvation = -91.879559 kcal Electronic energy + Delta-G solvation = -25424.653839 eV Core-core repulsion = 21497.065006 eV Total energy + Delta-G solvation = -3927.588833 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.136 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -42.18416 -41.38164 -40.21987 -39.03860 -37.21578 -36.50325 -34.93645 -34.39198 -32.06185 -31.89559 -31.36089 -29.13445 -27.28622 -26.24816 -24.42519 -23.47830 -22.50323 -21.63348 -21.22304 -20.19941 -18.87061 -18.68218 -18.48503 -17.90152 -17.44099 -17.26120 -16.93384 -16.46133 -16.05797 -15.62399 -15.51878 -15.14618 -15.04950 -14.81020 -14.76378 -14.34357 -14.15738 -14.02911 -14.01395 -13.73934 -13.28596 -13.27942 -13.02988 -12.84067 -12.69742 -12.34534 -12.16078 -12.05259 -11.58748 -11.34303 -11.06649 -10.90233 -10.78495 -10.54535 -10.13757 -9.98218 -8.85300 -8.38618 -6.46917 -0.13799 0.35770 0.47619 1.24648 1.30218 1.37716 1.46879 1.56766 2.05564 2.14913 2.26194 2.63095 2.75819 2.96766 3.37923 3.76974 3.94014 3.96454 4.28359 4.35993 4.38633 4.44594 4.50562 4.53822 4.62122 4.68473 4.70235 4.91011 5.02191 5.12467 5.16383 5.22975 5.29219 5.31714 5.32377 5.43606 5.44571 5.84483 5.96870 6.10084 6.45521 6.46371 6.55340 6.70047 6.92748 7.14539 7.20463 8.76591 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.038797 B = 0.002180 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.534526 B =12842.564956 C =13171.324334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.502 3.498 3 O -0.578 6.578 4 N -0.660 5.660 5 C 0.125 3.875 6 C -0.119 4.119 7 C -0.114 4.114 8 C 0.110 3.890 9 N -0.632 5.632 10 C 0.517 3.483 11 O -0.518 6.518 12 C 0.502 3.498 13 O -0.551 6.551 14 N -0.667 5.667 15 C 0.240 3.760 16 H 0.040 0.960 17 C -0.158 4.158 18 C -0.540 4.540 19 H 0.053 0.947 20 C 0.028 3.972 21 N -0.932 5.932 22 Si 0.942 3.058 23 H -0.259 1.259 24 H -0.254 1.254 25 H -0.292 1.292 26 C -0.119 4.119 27 C -0.114 4.114 28 H 0.116 0.884 29 H 0.093 0.907 30 H 0.112 0.888 31 H 0.431 0.569 32 H 0.158 0.842 33 H 0.133 0.867 34 H 0.431 0.569 35 H 0.413 0.587 36 H 0.048 0.952 37 H 0.063 0.937 38 H 0.054 0.946 39 H 0.272 0.728 40 H 0.147 0.853 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.718 5.626 13.279 31.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.293 3.707 3 O -0.458 6.458 4 N -0.307 5.307 5 C 0.030 3.970 6 C -0.139 4.139 7 C -0.134 4.134 8 C 0.016 3.984 9 N -0.279 5.279 10 C 0.299 3.701 11 O -0.393 6.393 12 C 0.282 3.718 13 O -0.430 6.430 14 N -0.316 5.316 15 C 0.136 3.864 16 H 0.058 0.942 17 C -0.216 4.216 18 C -0.578 4.578 19 H 0.072 0.928 20 C -0.172 4.172 21 N -0.570 5.570 22 Si 0.769 3.231 23 H -0.184 1.184 24 H -0.178 1.178 25 H -0.219 1.219 26 C -0.139 4.139 27 C -0.134 4.134 28 H 0.134 0.866 29 H 0.112 0.888 30 H 0.131 0.869 31 H 0.270 0.730 32 H 0.175 0.825 33 H 0.150 0.850 34 H 0.270 0.730 35 H 0.249 0.751 36 H 0.066 0.934 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.165 0.835 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -27.160 6.285 13.128 30.814 hybrid contribution 0.953 -0.236 -0.076 0.985 sum -26.207 6.049 13.053 29.896 Atomic orbital electron populations 1.21924 0.86781 1.06669 1.06702 1.21936 0.92699 0.82400 0.73635 1.90729 1.71733 1.33143 1.50150 1.43606 1.04023 1.10907 1.72182 1.17910 0.84001 0.97115 0.97960 1.20988 0.93609 1.00228 0.99122 1.21186 0.94229 0.97853 1.00178 1.17932 0.81694 0.96480 1.02285 1.43020 1.05692 1.62132 1.17052 1.20159 0.88422 0.78813 0.82754 1.90743 1.65321 1.42648 1.40570 1.20037 0.88250 0.80073 0.83473 1.90711 1.65820 1.45891 1.40571 1.45967 1.09439 1.58495 1.17710 1.19031 0.76674 0.93899 0.96823 0.94195 1.22375 1.00379 0.97335 1.01547 1.21186 0.93882 1.16989 1.25768 0.92834 1.25614 0.99965 0.96745 0.94859 1.69977 1.16616 1.35131 1.35314 0.85953 0.77865 0.78878 0.80437 1.18443 1.17803 1.21919 1.20994 0.94497 0.97150 1.01270 1.21120 0.92832 0.99487 0.99999 0.86560 0.88780 0.86909 0.72955 0.82464 0.84951 0.72996 0.75104 0.93365 0.91743 0.92744 0.91909 0.83497 0.84488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.58 10.31 71.24 0.73 0.16 16 2 C 0.50 7.00 7.78 87.66 0.68 7.68 16 3 O -0.58 -14.10 14.54 -3.06 -0.04 -14.15 16 4 N -0.66 -7.41 5.34 -303.37 -1.62 -9.03 16 5 C 0.13 2.28 6.30 38.15 0.24 2.52 16 6 C -0.12 -2.16 9.96 22.37 0.22 -1.93 16 7 C -0.11 -2.72 8.69 22.38 0.19 -2.52 16 8 C 0.11 2.68 6.30 38.20 0.24 2.92 16 9 N -0.63 -16.31 5.32 -304.74 -1.62 -17.93 16 10 C 0.52 16.52 7.73 87.23 0.67 17.20 16 11 O -0.52 -17.99 13.91 -3.37 -0.05 -18.04 16 12 C 0.50 18.63 7.85 87.23 0.68 19.31 16 13 O -0.55 -22.03 16.14 -3.26 -0.05 -22.08 16 14 N -0.67 -27.10 5.06 -447.56 -2.27 -29.36 16 15 C 0.24 11.15 2.15 44.24 0.10 11.25 16 16 H 0.04 1.99 6.63 -2.39 -0.02 1.97 16 17 C -0.16 -6.67 8.96 71.98 0.64 -6.02 16 18 C -0.54 -29.41 9.31 25.60 0.24 -29.17 16 19 H 0.05 3.16 7.98 -2.91 -0.02 3.14 16 20 C 0.03 1.58 5.45 84.66 0.46 2.04 16 21 N -0.93 -55.61 13.96 21.45 0.30 -55.31 16 22 Si 0.94 43.34 24.37 68.60 1.67 45.01 16 23 H -0.26 -11.18 6.88 99.48 0.68 -10.50 16 24 H -0.25 -11.28 6.52 99.48 0.65 -10.63 16 25 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 26 C -0.12 -2.53 9.96 22.38 0.22 -2.30 16 27 C -0.11 -2.42 8.69 22.38 0.19 -2.23 16 28 H 0.12 0.03 8.14 -2.39 -0.02 0.01 16 29 H 0.09 0.47 8.14 -2.38 -0.02 0.45 16 30 H 0.11 -0.24 8.14 -2.39 -0.02 -0.26 16 31 H 0.43 1.27 8.82 -92.70 -0.82 0.45 16 32 H 0.16 1.88 8.06 -2.91 -0.02 1.86 16 33 H 0.13 3.53 6.22 -2.91 -0.02 3.51 16 34 H 0.43 9.57 8.30 -92.71 -0.77 8.80 16 35 H 0.41 16.14 8.01 -92.71 -0.74 15.40 16 36 H 0.05 2.05 3.28 -2.39 -0.01 2.05 16 37 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 38 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 40 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 41 H 0.14 3.09 6.22 -2.91 -0.02 3.07 16 Total: -1.00 -74.30 349.17 0.56 -73.73 By element: Atomic # 1 Polarization: 29.57 SS G_CDS: -1.29 Total: 28.28 kcal Atomic # 6 Polarization: 13.35 SS G_CDS: 5.53 Total: 18.88 kcal Atomic # 7 Polarization: -106.43 SS G_CDS: -5.21 Total: -111.64 kcal Atomic # 8 Polarization: -54.12 SS G_CDS: -0.14 Total: -54.27 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 1.67 Total: 45.01 kcal Total: -74.30 0.56 -73.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000438884956.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.147 kcal (2) G-P(sol) polarization free energy of solvation -74.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds