Wall clock time and date at job start Fri Apr 10 2020 23:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47179 * 2 1 4 4 H 1.08998 * 109.46924 * 55.08464 * 3 2 1 5 5 C 1.52995 * 109.47084 * 175.08170 * 3 2 1 6 6 C 1.52993 * 109.47565 * 292.05922 * 5 3 2 7 7 F 1.39901 * 109.47354 * 65.26103 * 6 5 3 8 8 F 1.39899 * 109.47249 * 185.26485 * 6 5 3 9 9 F 1.39906 * 109.46930 * 305.26650 * 6 5 3 10 10 C 1.50696 * 109.46729 * 295.08451 * 3 2 1 11 11 O 1.21596 * 119.99929 * 239.99473 * 10 3 2 12 12 N 1.32915 * 120.00278 * 60.00581 * 10 3 2 13 13 C 1.33303 * 120.00180 * 179.97438 * 12 10 3 14 14 C 1.40987 * 126.35491 * 0.02562 * 13 12 10 15 15 C 1.35124 * 108.23860 * 179.97438 * 14 13 12 16 16 N 1.36335 * 108.89628 * 0.02562 * 15 14 13 17 17 C 1.46503 * 125.86138 * 179.97438 * 16 15 14 18 18 C 1.50700 * 109.47255 * 84.97143 * 17 16 15 19 19 H 1.08000 * 119.99955 * 359.97438 * 18 17 16 20 20 C 1.37872 * 120.00127 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99962 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00186 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47213 * 89.99797 * 22 20 18 24 24 H 1.48503 * 109.47065 * 210.00159 * 22 20 18 25 25 H 1.48494 * 109.46805 * 329.99636 * 22 20 18 26 26 N 1.37275 * 126.35933 * 179.70902 * 13 12 10 27 27 H 0.97002 * 126.34761 * 0.02562 * 26 13 12 28 28 H 1.09000 * 109.47183 * 68.08752 * 1 2 3 29 29 H 1.09001 * 109.47439 * 308.08791 * 1 2 3 30 30 H 1.08999 * 109.47159 * 188.08882 * 1 2 3 31 31 H 1.09009 * 109.46843 * 119.99848 * 2 1 3 32 32 H 1.08996 * 109.46881 * 239.99649 * 2 1 3 33 33 H 1.09006 * 109.47079 * 52.06123 * 5 3 2 34 34 H 1.08995 * 109.47109 * 172.05404 * 5 3 2 35 35 H 1.07999 * 125.88283 * 359.95357 * 14 13 12 36 36 H 1.08000 * 125.55227 * 179.97438 * 15 14 13 37 37 H 1.09001 * 109.47144 * 204.97588 * 17 16 15 38 38 H 1.09002 * 109.46925 * 324.97536 * 17 16 15 39 39 H 0.97002 * 120.00390 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6066 1.9811 0.8427 5 6 3.5650 1.4442 0.1237 6 6 3.9647 0.9415 1.5123 7 9 3.5891 -0.3992 1.6489 8 9 5.3502 1.0559 1.6687 9 9 3.3202 1.7082 2.4891 10 6 1.6396 2.1168 -1.2868 11 8 2.4923 2.5568 -2.0336 12 7 0.3542 2.2307 -1.6054 13 6 -0.0001 2.8277 -2.7434 14 6 0.8715 3.3826 -3.7026 15 6 0.1255 3.8903 -4.7084 16 7 -1.1925 3.6819 -4.4292 17 6 -2.3222 4.0848 -5.2705 18 6 -2.5755 3.0258 -6.3124 19 1 -1.9565 2.1414 -6.3449 20 6 -3.5966 3.1866 -7.2247 21 7 -4.3493 4.2643 -7.1860 22 14 -3.9110 1.8736 -8.5157 23 1 -4.8764 0.8782 -7.9845 24 1 -4.4723 2.5048 -9.7372 25 1 -2.6340 1.1943 -8.8519 26 7 -1.2810 3.0108 -3.2019 27 1 -2.0963 2.7301 -2.7576 28 1 -0.3633 0.3835 -0.9534 29 1 -0.3634 0.6339 0.8088 30 1 -0.3633 -1.0174 0.1446 31 1 1.8934 -0.5139 0.8901 32 1 1.8933 -0.5139 -0.8899 33 1 3.9919 0.7899 -0.6365 34 1 3.9398 2.4579 -0.0176 35 1 1.9498 3.3994 -3.6435 36 1 0.5106 4.3820 -5.5895 37 1 -3.2113 4.2055 -4.6515 38 1 -2.0904 5.0298 -5.7618 39 1 -5.0680 4.3773 -7.8276 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449889550.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:59:25 Heat of formation + Delta-G solvation = -112.728661 kcal Electronic energy + Delta-G solvation = -26695.855290 eV Core-core repulsion = 22225.505632 eV Total energy + Delta-G solvation = -4470.349658 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.125 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -51.12017 -48.62127 -48.55844 -42.34288 -40.35338 -36.52379 -35.85442 -34.66736 -32.60947 -32.43366 -31.76003 -28.67832 -27.44748 -25.15199 -23.91107 -23.60820 -22.73081 -22.18714 -20.28627 -19.53277 -19.32014 -18.86806 -18.57552 -18.11837 -16.97922 -16.77901 -16.59330 -16.05127 -15.85472 -15.68177 -15.55448 -15.44201 -15.05064 -14.82249 -14.72077 -14.58457 -14.45922 -14.41710 -14.23881 -13.93094 -13.84406 -13.64953 -13.08516 -12.84791 -12.75516 -12.63097 -12.31891 -12.12466 -12.00856 -11.87903 -11.66349 -11.18939 -10.78821 -10.52368 -10.43774 -9.79042 -8.59141 -8.26485 -6.56809 0.18484 0.58608 1.38124 1.42806 1.50543 1.54998 1.78836 2.30259 2.67501 2.85954 2.89632 2.95523 3.03817 3.12753 3.61569 3.81564 3.91242 3.96521 4.24679 4.36397 4.46872 4.51624 4.65333 4.73457 4.85132 4.88741 4.93562 5.02059 5.13916 5.22459 5.27517 5.40212 5.50793 5.69487 5.76544 5.99298 6.13266 6.43131 6.62753 6.86224 7.17292 7.87899 8.65621 Molecular weight = 319.12amu Principal moments of inertia in cm(-1) A = 0.029367 B = 0.002477 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.218677 B =11301.146602 C =11597.520657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.120 4.120 3 C -0.080 4.080 4 H 0.106 0.894 5 C -0.144 4.144 6 C 0.461 3.539 7 F -0.179 7.179 8 F -0.187 7.187 9 F -0.186 7.186 10 C 0.493 3.507 11 O -0.611 6.611 12 N -0.693 5.693 13 C 0.452 3.548 14 C -0.343 4.343 15 C 0.176 3.824 16 N -0.344 5.344 17 C 0.266 3.734 18 C -0.565 4.565 19 H 0.060 0.940 20 C 0.031 3.969 21 N -0.913 5.913 22 Si 0.962 3.038 23 H -0.277 1.277 24 H -0.279 1.279 25 H -0.269 1.269 26 N -0.460 5.460 27 H 0.453 0.547 28 H 0.066 0.934 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.093 0.907 32 H 0.054 0.946 33 H 0.116 0.884 34 H 0.114 0.886 35 H 0.177 0.823 36 H 0.223 0.777 37 H 0.044 0.956 38 H 0.072 0.928 39 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.146 -3.875 11.302 15.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.157 4.157 3 C -0.101 4.101 4 H 0.124 0.876 5 C -0.182 4.182 6 C 0.407 3.593 7 F -0.160 7.160 8 F -0.168 7.168 9 F -0.168 7.168 10 C 0.279 3.721 11 O -0.495 6.495 12 N -0.458 5.458 13 C 0.203 3.797 14 C -0.375 4.375 15 C 0.030 3.970 16 N -0.129 5.129 17 C 0.149 3.851 18 C -0.604 4.604 19 H 0.079 0.921 20 C -0.172 4.172 21 N -0.551 5.551 22 Si 0.788 3.212 23 H -0.203 1.203 24 H -0.204 1.204 25 H -0.194 1.194 26 N -0.182 5.182 27 H 0.301 0.699 28 H 0.085 0.915 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.111 0.889 32 H 0.073 0.927 33 H 0.134 0.866 34 H 0.133 0.867 35 H 0.194 0.806 36 H 0.239 0.761 37 H 0.062 0.938 38 H 0.090 0.910 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.514 -3.825 11.303 15.261 hybrid contribution -0.329 -0.446 -0.722 0.910 sum 9.185 -4.270 10.581 14.648 Atomic orbital electron populations 1.21808 0.94531 1.00483 1.03493 1.21766 0.97766 0.92973 1.03214 1.20911 0.93115 0.99011 0.97107 0.87639 1.22654 0.97937 1.06408 0.91232 1.20528 0.74300 0.75308 0.89175 1.93083 1.90500 1.35818 1.96644 1.93178 1.31336 1.95806 1.96494 1.93170 1.81612 1.75574 1.66438 1.20928 0.84775 0.78634 0.87733 1.90529 1.55945 1.50226 1.52817 1.68871 1.20896 1.37080 1.18911 1.19537 0.82907 0.86597 0.90611 1.22440 1.02246 1.15271 0.97520 1.23439 0.80659 0.93628 0.99239 1.47934 1.08662 1.46913 1.09383 1.19770 0.81487 0.96523 0.87303 1.21598 1.17131 1.06286 1.15349 0.92143 1.25582 0.94863 0.97585 0.99142 1.69956 1.19759 1.27755 1.37602 0.85471 0.78565 0.78847 0.78367 1.20268 1.20375 1.19380 1.44579 1.08417 1.52944 1.12309 0.69876 0.91537 0.92932 0.93028 0.88899 0.92680 0.86553 0.86727 0.80558 0.76056 0.93773 0.90986 0.91695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.69 9.25 71.98 0.67 -3.03 16 2 C -0.12 -2.91 5.10 30.60 0.16 -2.75 16 3 C -0.08 -2.11 2.22 -11.54 -0.03 -2.13 16 4 H 0.11 2.67 7.43 -2.39 -0.02 2.65 16 5 C -0.14 -3.24 4.22 30.59 0.13 -3.11 16 6 C 0.46 9.68 3.15 71.98 0.23 9.90 16 7 F -0.18 -3.76 14.21 44.97 0.64 -3.12 16 8 F -0.19 -4.00 17.32 44.97 0.78 -3.23 16 9 F -0.19 -4.14 16.45 44.97 0.74 -3.40 16 10 C 0.49 16.78 7.03 87.94 0.62 17.39 16 11 O -0.61 -23.11 12.76 -4.02 -0.05 -23.16 16 12 N -0.69 -24.16 7.64 -309.87 -2.37 -26.53 16 13 C 0.45 15.87 8.07 133.83 1.08 16.95 16 14 C -0.34 -11.55 9.51 22.23 0.21 -11.34 16 15 C 0.18 5.26 11.46 83.28 0.95 6.22 16 16 N -0.34 -11.61 3.63 -350.79 -1.27 -12.89 16 17 C 0.27 10.36 6.19 85.63 0.53 10.89 16 18 C -0.57 -25.46 9.39 25.60 0.24 -25.22 16 19 H 0.06 2.80 7.81 -2.91 -0.02 2.78 16 20 C 0.03 1.43 5.46 84.65 0.46 1.90 16 21 N -0.91 -44.75 13.29 21.45 0.28 -44.47 16 22 Si 0.96 37.84 29.54 68.60 2.03 39.87 16 23 H -0.28 -10.87 7.11 99.48 0.71 -10.16 16 24 H -0.28 -10.77 7.11 99.48 0.71 -10.06 16 25 H -0.27 -10.48 7.11 99.48 0.71 -9.78 16 26 N -0.46 -14.96 7.37 -54.81 -0.40 -15.36 16 27 H 0.45 13.00 8.96 -213.28 -1.91 11.09 16 28 H 0.07 2.00 5.89 -2.39 -0.01 1.98 16 29 H 0.05 1.28 8.12 -2.39 -0.02 1.27 16 30 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.09 1.99 5.20 -2.38 -0.01 1.98 16 32 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.12 2.52 8.13 -2.38 -0.02 2.50 16 34 H 0.11 2.62 7.85 -2.39 -0.02 2.60 16 35 H 0.18 6.28 5.77 -2.91 -0.02 6.26 16 36 H 0.22 4.88 8.06 -2.91 -0.02 4.86 16 37 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 39 H 0.27 12.81 8.31 -92.71 -0.77 12.04 16 Total: -1.00 -54.32 338.68 4.82 -49.51 By element: Atomic # 1 Polarization: 27.90 SS G_CDS: -0.80 Total: 27.10 kcal Atomic # 6 Polarization: 10.43 SS G_CDS: 5.25 Total: 15.68 kcal Atomic # 7 Polarization: -95.49 SS G_CDS: -3.76 Total: -99.25 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: -0.05 Total: -23.16 kcal Atomic # 9 Polarization: -11.90 SS G_CDS: 2.16 Total: -9.75 kcal Atomic # 14 Polarization: 37.84 SS G_CDS: 2.03 Total: 39.87 kcal Total: -54.32 4.82 -49.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449889550.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.220 kcal (2) G-P(sol) polarization free energy of solvation -54.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds