Wall clock time and date at job start Fri Apr 10 2020 23:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46835 * 2 1 4 4 C 1.50706 * 109.46845 * 240.00256 * 2 1 3 5 5 H 1.08002 * 119.99708 * 239.99716 * 4 2 1 6 6 C 1.37875 * 119.99911 * 60.00006 * 4 2 1 7 7 N 1.31510 * 120.00112 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99642 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.46936 * 90.00201 * 8 6 4 10 10 H 1.48504 * 109.46986 * 210.00135 * 8 6 4 11 11 H 1.48502 * 109.47206 * 330.00210 * 8 6 4 12 12 C 1.52994 * 109.47079 * 120.00284 * 2 1 3 13 13 N 1.46505 * 109.47240 * 299.99791 * 12 2 1 14 14 C 1.34773 * 120.00038 * 180.02562 * 13 12 2 15 15 O 1.21580 * 120.00113 * 359.97438 * 14 13 12 16 16 C 1.47625 * 119.99890 * 180.02562 * 14 13 12 17 17 C 1.39532 * 120.51264 * 0.02562 * 16 14 13 18 18 N 1.31704 * 120.95249 * 179.97438 * 17 16 14 19 19 C 1.32310 * 121.83527 * 0.02562 * 18 17 16 20 20 C 1.39845 * 120.55233 * 0.02562 * 19 18 17 21 21 C 1.38202 * 119.59785 * 359.97058 * 20 19 18 22 22 N 1.40132 * 119.52798 * 179.97438 * 20 19 18 23 23 C 1.35142 * 118.86610 * 15.56443 * 22 20 19 24 24 O 1.21294 * 120.20252 * 181.64843 * 23 22 20 25 25 C 1.50761 * 119.60741 * 1.67732 * 23 22 20 26 26 O 1.35762 * 120.37733 * 180.02562 * 19 18 17 27 27 H 1.08996 * 109.47153 * 299.99653 * 1 2 3 28 28 H 1.09001 * 109.46898 * 60.00041 * 1 2 3 29 29 H 1.09005 * 109.46900 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46923 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47596 * 300.00142 * 3 2 1 32 32 H 1.08996 * 109.46967 * 60.00232 * 3 2 1 33 33 H 0.97007 * 119.99919 * 179.97438 * 7 6 4 34 34 H 1.09001 * 109.47214 * 180.02562 * 12 2 1 35 35 H 1.09005 * 109.47320 * 60.00177 * 12 2 1 36 36 H 0.96995 * 119.99397 * 0.02562 * 13 12 2 37 37 H 1.07997 * 119.52566 * 0.25299 * 17 16 14 38 38 H 1.07996 * 120.95437 * 180.02562 * 21 20 19 39 39 H 0.96997 * 120.57085 * 195.57304 * 22 20 19 40 40 H 1.08997 * 109.43402 * 208.43074 * 25 23 22 41 41 H 1.09003 * 109.39513 * 88.54701 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6533 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3224 -1.1195 -4.0080 9 1 1.3447 -2.1614 -4.4124 10 1 2.4872 -0.1401 -5.1121 11 1 3.6308 -1.7566 -3.7121 12 6 2.0400 -0.7213 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8777 -0.4909 3.6695 15 8 2.5767 -1.4795 3.7810 16 6 1.3852 0.2046 4.8748 17 6 0.5811 1.3391 4.7593 18 7 0.1365 1.9661 5.8288 19 6 0.4291 1.5538 7.0515 20 6 1.2307 0.4249 7.2483 21 6 1.7193 -0.2644 6.1547 22 7 1.5276 0.0076 8.5527 23 6 0.7927 0.4949 9.5768 24 8 1.0478 0.1732 10.7182 25 6 -0.3467 1.4403 9.2923 26 8 -0.0456 2.2225 8.1335 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6766 1.9562 0.8900 33 1 0.7087 1.1614 -3.4844 34 1 3.1300 -0.7209 1.2494 35 1 1.6767 -1.7490 1.2491 36 1 0.9938 0.7577 2.3564 37 1 0.3158 1.7058 3.7787 38 1 2.3399 -1.1391 6.2813 39 1 2.2483 -0.6203 8.7178 40 1 -0.4921 2.1006 10.1471 41 1 -1.2574 0.8673 9.1175 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457998053.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:59:33 Heat of formation + Delta-G solvation = -84.621992 kcal Electronic energy + Delta-G solvation = -26167.185803 eV Core-core repulsion = 22239.911682 eV Total energy + Delta-G solvation = -3927.274122 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.136 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.89473 -41.21598 -40.16453 -38.99482 -38.06547 -36.85656 -35.07627 -33.42180 -32.67693 -31.35059 -29.28674 -27.50474 -27.48557 -26.99256 -25.58641 -24.85760 -22.81425 -21.11784 -20.64901 -20.28808 -19.59847 -18.58484 -18.10450 -17.82683 -17.69280 -16.96844 -16.58162 -16.50173 -16.33025 -16.09498 -15.81004 -15.31480 -14.98218 -14.76562 -14.67907 -14.42213 -14.25515 -14.04612 -13.92517 -13.16852 -13.06318 -12.72095 -12.65034 -12.57514 -12.56728 -12.20677 -12.11031 -11.59419 -11.44892 -11.43538 -11.14074 -10.75297 -10.72635 -10.63348 -10.36446 -9.99139 -9.38070 -7.99200 -6.14273 -0.72224 -0.23725 0.92810 1.43827 1.44525 1.48333 1.55389 1.65051 1.73482 2.17241 2.50018 2.53034 2.65883 3.17098 3.25003 3.49795 3.52926 3.66868 3.85715 3.94338 4.21906 4.30050 4.48344 4.56250 4.73330 4.77692 4.89898 5.04169 5.11167 5.11283 5.15750 5.25322 5.35556 5.48227 5.58791 5.71810 5.72952 5.77247 6.21344 6.26344 6.46477 6.47483 6.56310 6.60886 6.90282 7.17572 7.53519 8.99438 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.036982 B = 0.002449 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.940807 B =11430.461755 C =11968.263798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.051 3.949 3 C -0.124 4.124 4 C -0.526 4.526 5 H 0.046 0.954 6 C 0.029 3.971 7 N -0.898 5.898 8 Si 0.941 3.059 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.276 1.276 12 C 0.147 3.853 13 N -0.700 5.700 14 C 0.560 3.440 15 O -0.578 6.578 16 C -0.179 4.179 17 C 0.162 3.838 18 N -0.479 5.479 19 C 0.310 3.690 20 C 0.049 3.951 21 C -0.017 4.017 22 N -0.649 5.649 23 C 0.493 3.507 24 O -0.536 6.536 25 C 0.055 3.945 26 O -0.294 6.294 27 H 0.041 0.959 28 H 0.061 0.939 29 H 0.019 0.981 30 H 0.019 0.981 31 H 0.061 0.939 32 H 0.041 0.959 33 H 0.259 0.741 34 H 0.045 0.955 35 H 0.045 0.955 36 H 0.409 0.591 37 H 0.193 0.807 38 H 0.167 0.833 39 H 0.426 0.574 40 H 0.184 0.816 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.042 3.070 20.716 21.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.050 3.950 3 C -0.182 4.182 4 C -0.565 4.565 5 H 0.064 0.936 6 C -0.171 4.171 7 N -0.537 5.537 8 Si 0.769 3.231 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.201 1.201 12 C 0.024 3.976 13 N -0.351 5.351 14 C 0.347 3.653 15 O -0.460 6.460 16 C -0.185 4.185 17 C 0.004 3.996 18 N -0.197 5.197 19 C 0.128 3.872 20 C -0.049 4.049 21 C -0.046 4.046 22 N -0.298 5.298 23 C 0.281 3.719 24 O -0.412 6.412 25 C -0.023 4.023 26 O -0.203 6.203 27 H 0.060 0.940 28 H 0.080 0.920 29 H 0.038 0.962 30 H 0.038 0.962 31 H 0.080 0.920 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.248 0.752 37 H 0.209 0.791 38 H 0.184 0.816 39 H 0.267 0.733 40 H 0.201 0.799 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -4.198 3.383 21.273 21.946 hybrid contribution 1.162 -1.476 -1.103 2.178 sum -3.036 1.907 20.170 20.486 Atomic orbital electron populations 1.21710 0.97019 0.98864 1.00622 1.18366 0.93329 0.93051 0.90242 1.21708 0.98080 0.97830 1.00610 1.21278 1.31580 1.12127 0.91518 0.93609 1.25413 0.95236 0.95575 1.00868 1.69901 1.37029 1.23240 1.23523 0.85817 0.78657 0.78483 0.80167 1.20631 1.21079 1.20101 1.21364 0.97424 0.95279 0.83570 1.46034 1.52177 1.31817 1.05092 1.18133 0.80026 0.83632 0.83483 1.90760 1.40127 1.27862 1.87230 1.20681 1.04510 0.99704 0.93588 1.23075 0.90221 0.89127 0.97168 1.66970 1.23632 1.32521 0.96591 1.19522 0.92064 0.87816 0.87824 1.18532 1.02977 0.97303 0.86137 1.21244 0.96317 0.98287 0.88719 1.43702 1.35878 1.46674 1.03517 1.21952 0.84429 0.81257 0.84221 1.90840 1.69178 1.60083 1.21126 1.23729 0.95540 0.95295 0.87726 1.86182 1.80534 1.34154 1.19413 0.94032 0.91972 0.96152 0.96182 0.91966 0.94062 0.93104 0.93689 0.93613 0.75212 0.79069 0.81586 0.73251 0.79930 0.84946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.13 8.08 71.98 0.58 -4.55 16 2 C 0.05 2.18 0.50 -52.93 -0.03 2.16 16 3 C -0.12 -5.15 8.08 71.98 0.58 -4.57 16 4 C -0.53 -26.58 8.01 25.60 0.21 -26.38 16 5 H 0.05 2.36 7.74 -2.91 -0.02 2.34 16 6 C 0.03 1.47 5.15 84.65 0.44 1.91 16 7 N -0.90 -46.40 9.35 21.45 0.20 -46.20 16 8 Si 0.94 41.48 29.54 68.60 2.03 43.50 16 9 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 10 H -0.29 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 12 C 0.15 5.69 4.50 86.38 0.39 6.08 16 13 N -0.70 -21.15 4.91 -466.18 -2.29 -23.44 16 14 C 0.56 16.62 7.77 86.72 0.67 17.29 16 15 O -0.58 -21.32 16.42 -3.97 -0.07 -21.38 16 16 C -0.18 -3.97 5.89 -19.98 -0.12 -4.09 16 17 C 0.16 3.18 10.70 85.02 0.91 4.09 16 18 N -0.48 -10.10 10.37 -307.01 -3.18 -13.28 16 19 C 0.31 5.92 7.54 85.01 0.64 6.56 16 20 C 0.05 0.84 6.54 38.19 0.25 1.09 16 21 C -0.02 -0.33 9.61 22.77 0.22 -0.11 16 22 N -0.65 -9.35 5.48 -302.57 -1.66 -11.01 16 23 C 0.49 7.49 7.95 87.62 0.70 8.18 16 24 O -0.54 -11.48 17.95 -3.07 -0.06 -11.53 16 25 C 0.05 0.52 7.16 71.26 0.51 1.03 16 26 O -0.29 -4.78 10.50 -90.89 -0.95 -5.74 16 27 H 0.04 1.38 6.86 -2.39 -0.02 1.36 16 28 H 0.06 2.91 6.07 -2.39 -0.01 2.90 16 29 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 30 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.06 2.92 6.07 -2.39 -0.01 2.91 16 32 H 0.04 1.37 6.86 -2.39 -0.02 1.36 16 33 H 0.26 12.99 8.31 -92.70 -0.77 12.22 16 34 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 36 H 0.41 10.35 4.21 -92.71 -0.39 9.96 16 37 H 0.19 2.96 6.40 -2.91 -0.02 2.94 16 38 H 0.17 2.91 7.74 -2.91 -0.02 2.89 16 39 H 0.43 4.95 8.89 -92.71 -0.82 4.12 16 40 H 0.18 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.13 0.66 8.14 -2.39 -0.02 0.64 16 Total: -1.00 -65.25 341.33 -0.14 -65.39 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -0.11 Total: 15.01 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: 5.95 Total: 8.69 kcal Atomic # 7 Polarization: -87.01 SS G_CDS: -6.93 Total: -93.94 kcal Atomic # 8 Polarization: -37.58 SS G_CDS: -1.07 Total: -38.65 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.50 kcal Total: -65.25 -0.14 -65.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457998053.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.230 kcal (2) G-P(sol) polarization free energy of solvation -65.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds