Wall clock time and date at job start Fri Apr 10 2020 23:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.36448 * 127.16227 * 2 1 4 4 S 1.76195 * 126.37872 * 359.95977 * 3 2 1 5 5 C 1.81000 * 99.99930 * 180.02562 * 4 3 2 6 6 C 1.53006 * 109.46957 * 180.02562 * 5 4 3 7 7 C 1.53004 * 109.46851 * 299.99590 * 6 5 4 8 8 C 1.52999 * 109.47373 * 59.99885 * 6 5 4 9 9 C 1.50698 * 109.47195 * 180.02562 * 6 5 4 10 10 H 1.08002 * 120.00038 * 359.97438 * 9 6 5 11 11 C 1.37877 * 120.00078 * 179.97438 * 9 6 5 12 12 N 1.31505 * 120.00089 * 359.97438 * 11 9 6 13 13 Si 1.86806 * 119.99924 * 179.97438 * 11 9 6 14 14 H 1.48497 * 109.46746 * 59.99686 * 13 11 9 15 15 H 1.48502 * 109.46864 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.47183 * 299.99919 * 13 11 9 17 17 N 1.31564 * 107.24459 * 179.97438 * 3 2 1 18 18 N 1.28514 * 110.07235 * 359.75874 * 17 3 2 19 19 C 1.31311 * 109.93805 * 0.39781 * 18 17 3 20 20 C 1.47727 * 126.46679 * 179.88315 * 19 18 17 21 21 C 1.39749 * 120.13623 * 359.68580 * 20 19 18 22 22 N 1.31907 * 119.84281 * 179.97438 * 21 20 19 23 23 C 1.32283 * 120.11803 * 359.97438 * 22 21 20 24 24 C 1.38393 * 120.27512 * 0.26365 * 23 22 21 25 25 N 1.32029 * 120.15790 * 359.47003 * 24 23 22 26 26 H 1.09000 * 109.47247 * 270.04698 * 1 2 3 27 27 H 1.09002 * 109.46466 * 30.04322 * 1 2 3 28 28 H 1.08998 * 109.46992 * 150.04460 * 1 2 3 29 29 H 1.08997 * 109.47029 * 299.99600 * 5 4 3 30 30 H 1.08993 * 109.47606 * 60.00114 * 5 4 3 31 31 H 1.09003 * 109.46997 * 60.00103 * 7 6 5 32 32 H 1.09005 * 109.46983 * 180.02562 * 7 6 5 33 33 H 1.09002 * 109.47354 * 300.00458 * 7 6 5 34 34 H 1.08990 * 109.47192 * 59.99631 * 8 6 5 35 35 H 1.08995 * 109.46873 * 180.02562 * 8 6 5 36 36 H 1.09003 * 109.46902 * 300.00158 * 8 6 5 37 37 H 0.97003 * 120.00314 * 179.97438 * 12 11 9 38 38 H 1.08004 * 120.07979 * 359.95422 * 21 20 19 39 39 H 1.08002 * 119.85919 * 179.97438 * 23 22 21 40 40 H 1.07998 * 119.92388 * 179.72273 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2893 1.0874 0.0000 4 16 1.7901 2.7771 -0.0010 5 6 3.4105 3.5836 -0.0012 6 6 3.2244 5.1023 -0.0014 7 6 2.4464 5.5205 -1.2508 8 6 2.4465 5.5210 1.2477 9 6 4.5735 5.7738 -0.0023 10 1 5.4737 5.1770 -0.0022 11 6 4.6586 7.1499 -0.0031 12 7 3.5625 7.8765 -0.0037 13 14 6.3310 7.9822 -0.0034 14 1 7.0862 7.5752 -1.2155 15 1 6.1503 9.4562 -0.0050 16 1 7.0859 7.5769 1.2094 17 7 3.5263 0.6392 0.0006 18 7 3.5298 -0.6459 0.0060 19 6 2.2966 -1.0971 0.0007 20 6 1.8801 -2.5144 0.0018 21 6 2.8420 -3.5283 0.0024 22 7 2.4636 -4.7919 0.0039 23 6 1.1771 -5.0997 0.0053 24 6 0.2205 -4.0996 -0.0003 25 7 0.5869 -2.8312 0.0035 26 1 -0.3634 0.0008 1.0277 27 1 -0.3632 0.8896 -0.5145 28 1 -0.3633 -0.8904 -0.5131 29 1 3.9646 3.2860 0.8890 30 1 3.9649 3.2850 -0.8909 31 1 1.4706 5.0348 -1.2507 32 1 2.3142 6.6025 -1.2512 33 1 3.0006 5.2222 -2.1408 34 1 3.0007 5.2230 2.1377 35 1 2.3135 6.6028 1.2473 36 1 1.4707 5.0353 1.2479 37 1 3.6224 8.8447 -0.0040 38 1 3.8925 -3.2778 0.0014 39 1 0.8720 -6.1357 0.0061 40 1 -0.8283 -4.3573 -0.0037 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000519834560.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:59:53 Heat of formation + Delta-G solvation = 124.523443 kcal Electronic energy + Delta-G solvation = -23459.206325 eV Core-core repulsion = 20016.047052 eV Total energy + Delta-G solvation = -3443.159273 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 319.116 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.81328 -41.26297 -36.07910 -35.32368 -34.47364 -32.99570 -31.57931 -29.96130 -27.73214 -26.40584 -25.74359 -25.22396 -25.11706 -25.01882 -22.43520 -21.58246 -19.09370 -18.03442 -17.85050 -17.28014 -16.54554 -16.51573 -16.00772 -15.76979 -15.07336 -14.75744 -14.65595 -13.93033 -13.58154 -13.43435 -13.29255 -13.01128 -12.74962 -12.30504 -11.97326 -11.84957 -11.64943 -11.50109 -11.31815 -10.89843 -10.86790 -10.66192 -10.56988 -10.35940 -10.27957 -10.24371 -9.99149 -9.63263 -9.61421 -9.49936 -9.20845 -8.73541 -8.40315 -7.24405 -6.03083 -4.13837 0.01144 0.60369 1.36474 1.75945 2.47780 2.71835 2.78319 3.24607 3.30699 3.34869 3.38340 3.39172 3.80093 3.95120 4.22121 4.39654 4.59345 4.70867 4.71148 5.04082 5.10966 5.19120 5.23582 5.39072 5.59251 5.87177 5.89135 5.98465 6.07778 6.49148 6.53912 6.75668 6.76823 6.85132 6.96429 6.98654 7.25317 7.30691 7.53195 7.69005 7.97904 8.10317 8.34835 8.54951 8.85398 9.51778 10.98216 Molecular weight = 319.12amu Principal moments of inertia in cm(-1) A = 0.033210 B = 0.002651 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.908387 B =10561.048955 C =11207.588019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.448 5.448 3 C 0.177 3.823 4 S -0.005 6.005 5 C -0.069 4.069 6 C 0.081 3.919 7 C -0.136 4.136 8 C -0.136 4.136 9 C -0.505 4.505 10 H 0.059 0.941 11 C 0.068 3.932 12 N -0.885 5.885 13 Si 0.895 3.105 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.277 1.277 17 N -0.287 5.287 18 N -0.249 5.249 19 C 0.193 3.807 20 C 0.165 3.835 21 C 0.096 3.904 22 N -0.431 5.431 23 C 0.050 3.950 24 C 0.060 3.940 25 N -0.438 5.438 26 H 0.082 0.918 27 H 0.091 0.909 28 H 0.107 0.893 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.015 0.985 32 H 0.088 0.912 33 H 0.030 0.970 34 H 0.030 0.970 35 H 0.088 0.912 36 H 0.015 0.985 37 H 0.261 0.739 38 H 0.184 0.816 39 H 0.175 0.825 40 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.751 -20.775 -0.086 23.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.141 5.141 3 C -0.195 4.195 4 S 0.226 5.774 5 C -0.218 4.218 6 C 0.078 3.922 7 C -0.194 4.194 8 C -0.194 4.194 9 C -0.544 4.544 10 H 0.077 0.923 11 C -0.134 4.134 12 N -0.524 5.524 13 Si 0.723 3.277 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.202 1.202 17 N -0.134 5.134 18 N -0.093 5.093 19 C -0.074 4.074 20 C 0.024 3.976 21 C -0.066 4.066 22 N -0.144 5.144 23 C -0.111 4.111 24 C -0.102 4.102 25 N -0.155 5.155 26 H 0.100 0.900 27 H 0.109 0.891 28 H 0.126 0.874 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.034 0.966 32 H 0.107 0.893 33 H 0.049 0.951 34 H 0.049 0.951 35 H 0.107 0.893 36 H 0.034 0.966 37 H 0.072 0.928 38 H 0.201 0.799 39 H 0.192 0.808 40 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -10.449 -20.077 -0.079 22.633 hybrid contribution 0.602 -0.171 0.024 0.626 sum -9.847 -20.247 -0.056 22.515 Atomic orbital electron populations 1.22286 0.74231 1.05690 1.04510 1.46273 1.09024 1.04302 1.54526 1.27759 0.89710 0.97521 1.04529 1.85791 1.17189 0.83728 1.90704 1.24217 0.91066 1.00851 1.05629 1.18077 0.96287 0.84377 0.93430 1.21933 0.95752 1.04344 0.97384 1.21926 0.95766 1.04322 0.97385 1.20953 0.90995 0.91192 1.51305 0.92300 1.24872 0.96612 0.97207 0.94708 1.69789 1.26702 1.05611 1.50260 0.86605 0.84210 0.78156 0.78749 1.20222 1.21294 1.20217 1.74890 1.15675 1.01741 1.21115 1.74234 1.15796 1.03970 1.15316 1.21992 0.87320 0.87225 1.10850 1.19082 0.90364 0.89698 0.98411 1.23819 1.01853 0.87139 0.93784 1.68583 1.18197 1.19453 1.08191 1.23926 0.89239 1.01942 0.95955 1.23743 1.02146 0.87969 0.96297 1.68337 1.16634 1.21084 1.09445 0.89959 0.89056 0.87418 0.89697 0.89704 0.96604 0.89323 0.95119 0.95113 0.89344 0.96594 0.92839 0.79866 0.80839 0.80631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.79 10.54 59.85 0.63 1.42 16 2 N -0.45 -6.65 3.23 -121.46 -0.39 -7.04 16 3 C 0.18 3.11 8.07 -88.19 -0.71 2.40 16 4 S 0.00 -0.09 18.84 -107.50 -2.03 -2.11 16 5 C -0.07 -1.44 4.17 37.16 0.16 -1.28 16 6 C 0.08 1.87 0.52 -155.66 -0.08 1.79 16 7 C -0.14 -3.10 8.01 37.16 0.30 -2.81 16 8 C -0.14 -3.10 8.01 37.16 0.30 -2.81 16 9 C -0.50 -13.11 8.01 -34.44 -0.28 -13.38 16 10 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 11 C 0.07 1.77 5.15 -17.82 -0.09 1.68 16 12 N -0.89 -23.50 9.35 55.43 0.52 -22.98 16 13 Si 0.90 20.66 29.54 -169.99 -5.02 15.63 16 14 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 15 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 16 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 17 N -0.29 -5.59 11.59 30.71 0.36 -5.23 16 18 N -0.25 -4.39 11.88 32.59 0.39 -4.00 16 19 C 0.19 2.91 7.83 -153.70 -1.20 1.71 16 20 C 0.17 1.99 6.75 -82.86 -0.56 1.43 16 21 C 0.10 1.05 10.89 -16.95 -0.18 0.86 16 22 N -0.43 -4.20 10.49 -12.72 -0.13 -4.33 16 23 C 0.05 0.33 11.21 -17.30 -0.19 0.13 16 24 C 0.06 0.39 11.22 -17.41 -0.20 0.19 16 25 N -0.44 -4.35 8.02 -9.67 -0.08 -4.43 16 26 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.09 0.89 7.85 -51.93 -0.41 0.48 16 28 H 0.11 1.00 6.30 -51.93 -0.33 0.67 16 29 H 0.08 1.81 8.14 -51.92 -0.42 1.39 16 30 H 0.08 1.81 8.14 -51.92 -0.42 1.38 16 31 H 0.02 0.32 6.91 -51.93 -0.36 -0.04 16 32 H 0.09 2.22 6.07 -51.93 -0.31 1.91 16 33 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.09 2.22 6.07 -51.93 -0.32 1.90 16 36 H 0.02 0.32 6.91 -51.93 -0.36 -0.04 16 37 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 38 H 0.18 1.90 7.87 -52.48 -0.41 1.49 16 39 H 0.17 0.49 8.06 -52.49 -0.42 0.07 16 40 H 0.18 0.46 8.06 -52.49 -0.42 0.03 16 LS Contribution 345.50 15.07 5.21 5.21 Total: -1.00 -30.20 345.50 -8.29 -38.49 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -5.00 Total: -0.56 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: -2.12 Total: -8.66 kcal Atomic # 7 Polarization: -48.67 SS G_CDS: 0.66 Total: -48.01 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 16 Polarization: -0.09 SS G_CDS: -2.03 Total: -2.11 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.20 -8.29 -38.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519834560.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.014 kcal (2) G-P(sol) polarization free energy of solvation -30.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds