Wall clock time and date at job start Sat Apr 11 2020 00:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34234 * 117.00029 * 2 1 4 4 O 1.20824 * 119.99891 * 0.02562 * 3 2 1 5 5 C 1.50693 * 119.99934 * 179.97438 * 3 2 1 6 6 H 1.08998 * 109.77550 * 305.76004 * 5 3 2 7 7 C 1.53435 * 109.77513 * 66.56654 * 5 3 2 8 8 N 1.46758 * 108.59406 * 182.87686 * 7 5 3 9 9 C 1.46899 * 111.00290 * 74.56141 * 8 7 5 10 10 C 1.53002 * 109.47016 * 51.22076 * 9 8 7 11 11 H 1.08994 * 109.46972 * 300.76110 * 10 9 8 12 12 C 1.52999 * 109.47056 * 60.75854 * 10 9 8 13 13 C 1.52994 * 109.47121 * 180.75775 * 10 9 8 14 14 C 1.50698 * 109.47201 * 174.99886 * 13 10 9 15 15 H 1.08007 * 120.00139 * 0.02562 * 14 13 10 16 16 C 1.37869 * 120.00189 * 180.02562 * 14 13 10 17 17 N 1.31520 * 120.00183 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00136 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47103 * 90.00330 * 18 16 14 20 20 H 1.48501 * 109.47204 * 329.99873 * 18 16 14 21 21 H 1.48501 * 109.47115 * 210.00101 * 18 16 14 22 22 C 1.39853 * 112.12863 * 309.77363 * 8 7 5 23 23 C 1.39140 * 118.59882 * 199.89137 * 22 8 7 24 24 C 1.38064 * 120.24418 * 180.19431 * 23 22 8 25 25 C 1.38256 * 120.11739 * 0.02562 * 24 23 22 26 26 C 1.38177 * 120.02680 * 359.90591 * 25 24 23 27 27 C 1.38778 * 120.20725 * 0.02562 * 26 25 24 28 28 O 1.36143 * 118.74242 * 180.26907 * 27 26 25 29 29 H 1.08997 * 109.47149 * 59.99456 * 1 2 3 30 30 H 1.08995 * 109.46819 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46811 * 299.99492 * 1 2 3 32 32 H 1.08993 * 109.61499 * 63.14607 * 7 5 3 33 33 H 1.08993 * 109.61614 * 302.60629 * 7 5 3 34 34 H 1.08991 * 109.46986 * 291.22166 * 9 8 7 35 35 H 1.08994 * 109.46857 * 171.21777 * 9 8 7 36 36 H 1.08997 * 109.47239 * 65.02014 * 12 10 9 37 37 H 1.09004 * 109.47262 * 185.02278 * 12 10 9 38 38 H 1.09006 * 109.47535 * 305.02169 * 12 10 9 39 39 H 1.09007 * 109.46847 * 55.00185 * 13 10 9 40 40 H 1.08995 * 109.47282 * 294.99888 * 13 10 9 41 41 H 0.96998 * 119.99618 * 359.97438 * 17 16 14 42 42 H 1.08001 * 119.87665 * 0.18008 * 23 22 8 43 43 H 1.08002 * 119.94322 * 180.02562 * 24 23 22 44 44 H 1.07997 * 119.98671 * 179.97438 * 25 24 23 45 45 H 1.08001 * 119.89801 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9656 0.6958 0.8332 7 6 4.1153 0.7284 -1.3239 8 7 5.5816 0.7529 -1.2683 9 6 6.0939 -0.3209 -0.4066 10 6 5.4708 -1.6535 -0.8273 11 1 4.3860 -1.5903 -0.7420 12 6 5.8515 -1.9592 -2.2772 13 6 5.9898 -2.7688 0.0823 14 6 5.2848 -4.0582 -0.2515 15 1 4.5412 -4.0801 -1.0345 16 6 5.5890 -5.2100 0.4425 17 7 6.4942 -5.1833 1.3963 18 14 4.7156 -6.8084 0.0283 19 1 5.4802 -7.5334 -1.0182 20 1 3.3499 -6.5107 -0.4732 21 1 4.6225 -7.6518 1.2469 22 6 6.0727 1.9981 -0.8631 23 6 7.3945 2.3198 -1.1551 24 6 7.9156 3.5381 -0.7675 25 6 7.1257 4.4453 -0.0860 26 6 5.8115 4.1347 0.2069 27 6 5.2798 2.9128 -0.1805 28 8 3.9800 2.6400 0.1186 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 3.7699 1.3520 -2.1483 33 1 3.7716 -0.2960 -1.4675 34 1 5.8338 -0.1096 0.6306 35 1 7.1778 -0.3795 -0.5047 36 1 6.9287 -2.1105 -2.3459 37 1 5.3362 -2.8619 -2.6056 38 1 5.5608 -1.1231 -2.9134 39 1 5.7970 -2.5082 1.1230 40 1 7.0623 -2.8915 -0.0689 41 1 6.9480 -4.3534 1.6112 42 1 8.0153 1.6137 -1.6867 43 1 8.9422 3.7830 -0.9970 44 1 7.5356 5.3976 0.2165 45 1 5.1964 4.8448 0.7397 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895918244.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:01:58 Heat of formation + Delta-G solvation = -105.885647 kcal Electronic energy + Delta-G solvation = -27755.588113 eV Core-core repulsion = 23930.932273 eV Total energy + Delta-G solvation = -3824.655839 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.76534 -41.42711 -38.85219 -38.67065 -37.62712 -36.28243 -34.07506 -32.66383 -31.40945 -29.73997 -28.72902 -28.28420 -27.11928 -25.88072 -24.76581 -23.41762 -22.92890 -21.58901 -20.56325 -19.46976 -19.10284 -18.93337 -18.29364 -17.95404 -17.42594 -16.88454 -16.29438 -16.20345 -15.94893 -15.67828 -15.54557 -15.19197 -14.96764 -14.80075 -14.58457 -14.38315 -14.09872 -13.66293 -13.53848 -13.26632 -13.08360 -12.98214 -12.85030 -12.64039 -12.55306 -12.45179 -12.20374 -12.09775 -11.98329 -11.92166 -11.71173 -11.48892 -11.31173 -10.64737 -10.48590 -10.41309 -9.47970 -9.05331 -8.60667 -6.30020 0.24888 0.35002 0.72541 0.92666 1.55340 1.63832 1.80639 2.19641 2.45777 2.61041 2.75204 3.12308 3.23190 3.41174 3.47698 3.64209 3.79237 3.96596 4.06877 4.16980 4.18799 4.25248 4.27234 4.32107 4.41719 4.47252 4.48838 4.63171 4.64886 4.72627 4.82095 4.90224 5.03105 5.07888 5.15344 5.22312 5.32620 5.33980 5.44443 5.52371 5.58060 5.62689 5.74900 5.86806 6.08410 6.26175 6.28018 6.38192 6.65976 7.50401 8.80053 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.011198 B = 0.004373 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2499.763290 B = 6401.313283 C = 8318.480431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.353 6.353 3 C 0.482 3.518 4 O -0.512 6.512 5 C 0.062 3.938 6 H 0.109 0.891 7 C 0.027 3.973 8 N -0.471 5.471 9 C 0.071 3.929 10 C -0.073 4.073 11 H 0.066 0.934 12 C -0.117 4.117 13 C 0.019 3.981 14 C -0.599 4.599 15 H 0.055 0.945 16 C -0.040 4.040 17 N -0.944 5.944 18 Si 1.114 2.886 19 H -0.275 1.275 20 H -0.267 1.267 21 H -0.288 1.288 22 C 0.012 3.988 23 C -0.092 4.092 24 C -0.129 4.129 25 C -0.091 4.091 26 C -0.138 4.138 27 C 0.060 3.940 28 O -0.305 6.305 29 H 0.073 0.927 30 H 0.134 0.866 31 H 0.068 0.932 32 H 0.102 0.898 33 H 0.125 0.875 34 H 0.027 0.973 35 H 0.084 0.916 36 H 0.039 0.961 37 H 0.043 0.957 38 H 0.069 0.931 39 H -0.017 1.017 40 H -0.010 1.010 41 H 0.254 0.746 42 H 0.137 0.863 43 H 0.158 0.842 44 H 0.164 0.836 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.964 17.239 -5.428 18.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.269 6.269 3 C 0.324 3.676 4 O -0.400 6.400 5 C 0.003 3.997 6 H 0.127 0.873 7 C -0.101 4.101 8 N -0.187 5.187 9 C -0.054 4.054 10 C -0.092 4.092 11 H 0.084 0.916 12 C -0.174 4.174 13 C -0.018 4.018 14 C -0.637 4.637 15 H 0.073 0.927 16 C -0.237 4.237 17 N -0.582 5.582 18 Si 0.937 3.063 19 H -0.201 1.201 20 H -0.191 1.191 21 H -0.214 1.214 22 C -0.084 4.084 23 C -0.111 4.111 24 C -0.147 4.147 25 C -0.110 4.110 26 C -0.157 4.157 27 C 0.013 3.987 28 O -0.220 6.220 29 H 0.091 0.909 30 H 0.152 0.848 31 H 0.087 0.913 32 H 0.120 0.880 33 H 0.143 0.857 34 H 0.045 0.955 35 H 0.102 0.898 36 H 0.058 0.942 37 H 0.062 0.938 38 H 0.088 0.912 39 H 0.001 0.999 40 H 0.008 0.992 41 H 0.064 0.936 42 H 0.155 0.845 43 H 0.176 0.824 44 H 0.181 0.819 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -4.297 15.932 -5.462 17.382 hybrid contribution -0.303 1.470 0.719 1.664 sum -4.600 17.402 -4.742 18.614 Atomic orbital electron populations 1.23719 0.73224 1.06274 1.03239 1.86529 1.26099 1.30947 1.83308 1.22695 0.90253 0.82096 0.72554 1.90665 1.67025 1.37047 1.45226 1.22275 0.89704 0.84240 1.03522 0.87338 1.23086 0.87467 1.05370 0.94175 1.59339 1.07398 1.01831 1.50087 1.22345 1.00709 0.89565 0.92798 1.21103 0.99301 0.91908 0.96850 0.91583 1.21526 1.00399 1.00693 0.94762 1.19151 0.94891 0.94293 0.93503 1.22401 1.24434 0.95639 1.21234 0.92665 1.27277 0.96680 1.06375 0.93403 1.70894 1.26063 1.29994 1.31245 0.82965 0.75650 0.71618 0.76116 1.20077 1.19126 1.21355 1.19025 0.96260 0.91952 1.01192 1.21095 0.92743 0.98089 0.99203 1.21379 1.01544 0.92839 0.98972 1.21331 0.91653 1.00765 0.97209 1.20736 0.96897 0.94812 1.03288 1.19392 0.83566 0.97652 0.98066 1.86235 1.25360 1.25524 1.84845 0.90870 0.84791 0.91324 0.87988 0.85750 0.95507 0.89785 0.94173 0.93801 0.91242 0.99901 0.99195 0.93635 0.84499 0.82435 0.81861 0.84300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.56 113.37 1.20 1.72 16 2 O -0.35 -9.44 10.57 -51.46 -0.54 -9.98 16 3 C 0.48 14.34 7.31 71.23 0.52 14.86 16 4 O -0.51 -17.29 16.27 28.34 0.46 -16.83 16 5 C 0.06 1.84 3.34 29.99 0.10 1.94 16 6 H 0.11 3.30 6.88 -2.39 -0.02 3.28 16 7 C 0.03 0.76 4.83 86.48 0.42 1.18 16 8 N -0.47 -13.60 3.93 -694.35 -2.73 -16.32 16 9 C 0.07 2.32 4.10 86.30 0.35 2.67 16 10 C -0.07 -2.77 1.85 -10.80 -0.02 -2.79 16 11 H 0.07 2.49 5.96 -2.39 -0.01 2.48 16 12 C -0.12 -4.11 8.76 71.98 0.63 -3.48 16 13 C 0.02 0.95 3.76 29.85 0.11 1.06 16 14 C -0.60 -32.63 8.47 25.60 0.22 -32.41 16 15 H 0.06 2.91 7.06 -2.91 -0.02 2.89 16 16 C -0.04 -2.29 5.46 84.65 0.46 -1.83 16 17 N -0.94 -57.86 13.65 21.45 0.29 -57.57 16 18 Si 1.11 49.41 29.90 68.60 2.05 51.46 16 19 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 20 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 21 H -0.29 -12.80 7.11 99.48 0.71 -12.10 16 22 C 0.01 0.33 5.11 38.25 0.20 0.53 16 23 C -0.09 -2.13 9.53 22.45 0.21 -1.91 16 24 C -0.13 -2.30 10.03 22.23 0.22 -2.08 16 25 C -0.09 -1.59 10.04 22.26 0.22 -1.37 16 26 C -0.14 -3.17 9.94 22.38 0.22 -2.95 16 27 C 0.06 1.70 6.47 22.58 0.15 1.84 16 28 O -0.31 -9.61 9.61 -76.33 -0.73 -10.35 16 29 H 0.07 1.26 8.13 -2.39 -0.02 1.24 16 30 H 0.13 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.07 1.24 8.13 -2.39 -0.02 1.22 16 32 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 33 H 0.12 3.49 5.30 -2.39 -0.01 3.47 16 34 H 0.03 0.92 7.02 -2.39 -0.02 0.90 16 35 H 0.08 2.73 7.94 -2.39 -0.02 2.71 16 36 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.04 1.65 7.10 -2.38 -0.02 1.63 16 38 H 0.07 2.10 7.30 -2.38 -0.02 2.08 16 39 H -0.02 -0.92 8.01 -2.38 -0.02 -0.94 16 40 H -0.01 -0.54 8.01 -2.39 -0.02 -0.56 16 41 H 0.25 15.79 7.22 -92.71 -0.67 15.12 16 42 H 0.14 2.96 8.06 -2.91 -0.02 2.94 16 43 H 0.16 1.82 8.06 -2.91 -0.02 1.80 16 44 H 0.16 1.69 8.06 -2.91 -0.02 1.66 16 45 H 0.14 2.84 8.06 -2.91 -0.02 2.82 16 Total: -1.00 -70.08 365.53 5.10 -64.97 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: 1.09 Total: 17.63 kcal Atomic # 6 Polarization: -28.23 SS G_CDS: 5.22 Total: -23.02 kcal Atomic # 7 Polarization: -71.46 SS G_CDS: -2.43 Total: -73.89 kcal Atomic # 8 Polarization: -36.34 SS G_CDS: -0.82 Total: -37.16 kcal Atomic # 14 Polarization: 49.41 SS G_CDS: 2.05 Total: 51.46 kcal Total: -70.08 5.10 -64.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895918244.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.912 kcal (2) G-P(sol) polarization free energy of solvation -70.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds