Wall clock time and date at job start Sat Apr 11 2020 00:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34229 * 116.99617 * 2 1 4 4 O 1.20827 * 120.00005 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00095 * 180.02562 * 3 2 1 6 6 H 1.09006 * 109.77108 * 54.24937 * 5 3 2 7 7 C 1.53425 * 109.77404 * 293.44925 * 5 3 2 8 8 N 1.46762 * 108.59701 * 177.15408 * 7 5 3 9 9 C 1.46899 * 111.00101 * 175.05366 * 8 7 5 10 10 C 1.53003 * 109.47001 * 50.35825 * 9 8 7 11 11 H 1.08997 * 109.47173 * 303.79084 * 10 9 8 12 12 C 1.53000 * 109.47271 * 63.79315 * 10 9 8 13 13 C 1.53008 * 109.46601 * 183.79549 * 10 9 8 14 14 C 1.50701 * 109.46623 * 175.00111 * 13 10 9 15 15 H 1.07998 * 120.00208 * 359.97438 * 14 13 10 16 16 C 1.37875 * 119.99953 * 179.97438 * 14 13 10 17 17 N 1.31519 * 119.99742 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00244 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47105 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47444 * 119.99795 * 18 16 14 21 21 H 1.48494 * 109.47239 * 239.99830 * 18 16 14 22 22 C 1.39856 * 112.12017 * 50.27209 * 8 7 5 23 23 C 1.39140 * 118.58727 * 160.18734 * 22 8 7 24 24 C 1.38064 * 120.23557 * 179.49690 * 23 22 8 25 25 C 1.38255 * 120.11698 * 0.03941 * 24 23 22 26 26 C 1.38174 * 120.03014 * 0.09026 * 25 24 23 27 27 C 1.38775 * 120.20630 * 359.95587 * 26 25 24 28 28 O 1.36152 * 118.75818 * 179.82085 * 27 26 25 29 29 H 1.08995 * 109.46982 * 60.00337 * 1 2 3 30 30 H 1.09008 * 109.46680 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46969 * 299.99892 * 1 2 3 32 32 H 1.08998 * 109.61700 * 296.88368 * 7 5 3 33 33 H 1.09006 * 109.61705 * 57.42326 * 7 5 3 34 34 H 1.08998 * 109.47326 * 170.35729 * 9 8 7 35 35 H 1.09005 * 109.46941 * 290.35943 * 9 8 7 36 36 H 1.09004 * 109.46718 * 65.31504 * 12 10 9 37 37 H 1.08997 * 109.46814 * 185.31831 * 12 10 9 38 38 H 1.09000 * 109.46750 * 305.31782 * 12 10 9 39 39 H 1.09000 * 109.46823 * 294.99303 * 13 10 9 40 40 H 1.08993 * 109.47147 * 54.99948 * 13 10 9 41 41 H 0.97005 * 119.99456 * 180.02562 * 17 16 14 42 42 H 1.07998 * 119.88581 * 359.49621 * 23 22 8 43 43 H 1.08008 * 119.94324 * 180.02562 * 24 23 22 44 44 H 1.08005 * 119.98429 * 180.11580 * 25 24 23 45 45 H 1.08002 * 119.89856 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5662 1.2750 -0.0006 6 1 3.9655 0.6960 -0.8334 7 6 4.1152 0.7282 1.3236 8 7 5.5816 0.7535 1.2684 9 6 6.1639 0.3502 2.5554 10 6 5.5268 -0.9631 3.0141 11 1 4.4446 -0.8438 3.0644 12 6 5.8721 -2.0725 2.0187 13 6 6.0638 -1.3342 4.3980 14 6 5.3470 -2.5600 4.9027 15 1 4.5845 -3.0273 4.2973 16 6 5.6647 -3.0849 6.1374 17 7 6.5936 -2.5161 6.8745 18 14 4.7757 -4.6038 6.7634 19 1 3.7825 -5.0479 5.7526 20 1 5.7596 -5.6903 7.0017 21 1 4.0779 -4.2807 8.0337 22 6 6.0720 1.9996 0.8649 23 6 7.3941 2.3209 1.1562 24 6 7.9164 3.5375 0.7646 25 6 7.1270 4.4436 0.0811 26 6 5.8122 4.1338 -0.2099 27 6 5.2795 2.9135 0.1810 28 8 3.9795 2.6404 -0.1179 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.7693 1.3514 2.1483 33 1 3.7721 -0.2965 1.4668 34 1 7.2389 0.2118 2.4403 35 1 5.9747 1.1249 3.2985 36 1 6.9463 -2.2565 2.0379 37 1 5.3421 -2.9846 2.2931 38 1 5.5737 -1.7666 1.0159 39 1 7.1320 -1.5402 4.3299 40 1 5.8966 -0.5061 5.0866 41 1 6.8173 -2.8856 7.7430 42 1 8.0139 1.6162 1.6905 43 1 8.9434 3.7818 0.9929 44 1 7.5383 5.3939 -0.2258 45 1 5.1974 4.8435 -0.7436 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895918245.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:02:03 Heat of formation + Delta-G solvation = -86.674233 kcal Electronic energy + Delta-G solvation = -27389.258573 eV Core-core repulsion = 23565.435803 eV Total energy + Delta-G solvation = -3823.822770 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.52412 -40.37057 -37.74389 -37.45996 -36.56623 -34.44613 -32.13983 -31.66094 -30.41325 -28.73402 -27.79550 -26.83562 -25.72577 -24.71808 -23.23051 -22.04444 -21.57652 -20.30415 -19.19259 -18.41426 -17.83506 -17.37104 -16.90433 -16.40022 -16.35200 -15.76927 -15.14685 -14.77124 -14.75196 -14.42302 -14.23465 -13.99111 -13.77420 -13.61376 -13.46144 -13.06900 -12.59156 -12.44703 -12.27334 -12.07108 -11.86689 -11.53152 -11.47022 -11.39238 -11.06570 -10.95764 -10.91374 -10.82908 -10.58761 -10.42759 -10.35522 -9.87544 -9.70473 -9.31137 -9.04225 -8.54715 -8.39623 -7.60056 -6.04118 -4.05800 1.30762 1.35575 1.83110 1.91994 3.20904 3.28015 3.36129 3.39250 3.63094 3.88220 4.21209 4.40767 4.44046 4.59326 4.69049 4.87440 4.95896 4.97925 5.12791 5.28486 5.29533 5.30002 5.32697 5.38846 5.47012 5.55677 5.64345 5.81264 5.94179 6.01562 6.04018 6.12707 6.25620 6.33398 6.46373 6.50409 6.61277 6.80256 6.87765 6.96725 7.06953 7.11686 7.33638 7.43965 7.59321 7.72584 7.94553 8.37189 9.00221 9.58284 11.07353 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.010629 B = 0.004095 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2633.718802 B = 6835.569817 C = 9065.029126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.348 6.348 3 C 0.474 3.526 4 O -0.483 6.483 5 C 0.100 3.900 6 H 0.122 0.878 7 C 0.026 3.974 8 N -0.480 5.480 9 C 0.062 3.938 10 C -0.090 4.090 11 H 0.060 0.940 12 C -0.127 4.127 13 C 0.029 3.971 14 C -0.514 4.514 15 H 0.057 0.943 16 C 0.057 3.943 17 N -0.895 5.895 18 Si 0.889 3.111 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.285 1.285 22 C 0.054 3.946 23 C -0.123 4.123 24 C -0.121 4.121 25 C -0.121 4.121 26 C -0.119 4.119 27 C 0.080 3.920 28 O -0.295 6.295 29 H 0.064 0.936 30 H 0.107 0.893 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.123 0.877 34 H 0.086 0.914 35 H 0.046 0.954 36 H 0.046 0.954 37 H 0.057 0.943 38 H 0.041 0.959 39 H 0.019 0.981 40 H 0.014 0.986 41 H 0.260 0.740 42 H 0.134 0.866 43 H 0.125 0.875 44 H 0.127 0.873 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.092 9.494 -15.739 18.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.264 6.264 3 C 0.314 3.686 4 O -0.368 6.368 5 C 0.042 3.958 6 H 0.139 0.861 7 C -0.101 4.101 8 N -0.194 5.194 9 C -0.062 4.062 10 C -0.109 4.109 11 H 0.078 0.922 12 C -0.184 4.184 13 C -0.009 4.009 14 C -0.552 4.552 15 H 0.075 0.925 16 C -0.144 4.144 17 N -0.535 5.535 18 Si 0.718 3.282 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.211 1.211 22 C -0.044 4.044 23 C -0.143 4.143 24 C -0.139 4.139 25 C -0.140 4.140 26 C -0.138 4.138 27 C 0.033 3.967 28 O -0.209 6.209 29 H 0.083 0.917 30 H 0.126 0.874 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.141 0.859 34 H 0.104 0.896 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.076 0.924 38 H 0.060 0.940 39 H 0.037 0.963 40 H 0.032 0.968 41 H 0.069 0.931 42 H 0.152 0.848 43 H 0.143 0.857 44 H 0.145 0.855 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -4.297 9.483 -15.934 19.033 hybrid contribution -0.759 -0.487 1.034 1.372 sum -5.057 8.996 -14.900 18.124 Atomic orbital electron populations 1.23370 0.75228 1.04262 1.02792 1.86490 1.24073 1.31920 1.83968 1.22751 0.90389 0.82068 0.73359 1.90706 1.66457 1.36241 1.43419 1.21783 0.88652 0.83756 1.01603 0.86060 1.22765 0.88022 1.04783 0.94567 1.58888 1.05997 1.22877 1.31674 1.22616 1.00124 0.98441 0.85005 1.21418 0.99286 0.91613 0.98593 0.92205 1.21646 1.01131 0.98632 0.97038 1.19119 0.96549 0.96474 0.88736 1.21218 1.20602 1.11448 1.01968 0.92469 1.25009 0.95234 0.97241 0.96948 1.69972 1.31283 1.40494 1.11723 0.86575 0.79687 0.83174 0.78812 1.19726 1.21033 1.21102 1.19062 0.95122 0.89448 1.00808 1.20997 0.93517 0.97762 1.02069 1.20946 1.00019 0.93722 0.99256 1.20817 0.93009 0.99876 1.00266 1.20381 0.95635 0.95191 1.02575 1.18609 0.82426 0.94962 1.00684 1.86202 1.24589 1.25245 1.84890 0.91699 0.87436 0.91491 0.91667 0.85884 0.89587 0.93579 0.93532 0.92420 0.93978 0.96294 0.96762 0.93071 0.84816 0.85691 0.85527 0.85216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.56 101.05 1.07 1.38 16 2 O -0.35 -4.04 10.57 -39.26 -0.41 -4.45 16 3 C 0.47 6.37 7.31 36.00 0.26 6.63 16 4 O -0.48 -7.71 16.27 -25.41 -0.41 -8.13 16 5 C 0.10 1.32 3.54 -27.66 -0.10 1.23 16 6 H 0.12 1.40 8.14 -51.93 -0.42 0.98 16 7 C 0.03 0.36 4.13 -3.68 -0.02 0.35 16 8 N -0.48 -7.08 4.07 -170.81 -0.69 -7.78 16 9 C 0.06 1.01 3.77 -3.82 -0.01 1.00 16 10 C -0.09 -1.70 1.85 -90.61 -0.17 -1.87 16 11 H 0.06 1.13 6.19 -51.93 -0.32 0.81 16 12 C -0.13 -2.25 8.72 37.16 0.32 -1.93 16 13 C 0.03 0.70 4.45 -27.88 -0.12 0.57 16 14 C -0.51 -13.79 8.47 -34.44 -0.29 -14.08 16 15 H 0.06 1.49 7.06 -52.49 -0.37 1.12 16 16 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 17 N -0.90 -26.21 13.29 55.43 0.74 -25.48 16 18 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 19 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 22 C 0.05 0.79 5.81 -83.59 -0.49 0.30 16 23 C -0.12 -1.61 9.07 -39.31 -0.36 -1.96 16 24 C -0.12 -1.35 10.03 -39.64 -0.40 -1.74 16 25 C -0.12 -1.29 10.04 -39.60 -0.40 -1.68 16 26 C -0.12 -1.46 9.94 -39.41 -0.39 -1.85 16 27 C 0.08 1.14 6.47 -39.11 -0.25 0.89 16 28 O -0.29 -4.41 9.61 -39.93 -0.38 -4.79 16 29 H 0.06 0.51 8.13 -51.93 -0.42 0.08 16 30 H 0.11 0.63 8.14 -51.92 -0.42 0.20 16 31 H 0.07 0.58 8.13 -51.93 -0.42 0.15 16 32 H 0.07 0.98 8.13 -51.93 -0.42 0.56 16 33 H 0.12 1.69 6.24 -51.93 -0.32 1.36 16 34 H 0.09 1.36 6.42 -51.93 -0.33 1.02 16 35 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 36 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.06 1.09 7.11 -51.93 -0.37 0.72 16 38 H 0.04 0.65 7.46 -51.93 -0.39 0.27 16 39 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 42 H 0.13 1.68 6.12 -52.49 -0.32 1.36 16 43 H 0.13 1.10 8.06 -52.48 -0.42 0.67 16 44 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 45 H 0.13 1.40 8.06 -52.49 -0.42 0.97 16 LS Contribution 366.61 15.07 5.52 5.52 Total: -1.00 -31.63 366.61 -8.74 -40.36 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -6.63 Total: -0.07 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: -1.44 Total: -11.30 kcal Atomic # 7 Polarization: -33.30 SS G_CDS: 0.04 Total: -33.25 kcal Atomic # 8 Polarization: -16.16 SS G_CDS: -1.21 Total: -17.38 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.63 -8.74 -40.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895918245.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.310 kcal (2) G-P(sol) polarization free energy of solvation -31.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds