Wall clock time and date at job start Sat Apr 11 2020 00:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34229 * 116.99617 * 2 1 4 4 O 1.20827 * 120.00005 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00095 * 180.02562 * 3 2 1 6 6 H 1.09006 * 109.77108 * 54.24937 * 5 3 2 7 7 C 1.53425 * 109.77404 * 293.44925 * 5 3 2 8 8 N 1.46762 * 108.59701 * 177.15408 * 7 5 3 9 9 C 1.46899 * 111.00101 * 175.05366 * 8 7 5 10 10 C 1.53003 * 109.47001 * 50.35825 * 9 8 7 11 11 H 1.08997 * 109.47173 * 303.79084 * 10 9 8 12 12 C 1.53000 * 109.47271 * 63.79315 * 10 9 8 13 13 C 1.53008 * 109.46601 * 183.79549 * 10 9 8 14 14 C 1.50701 * 109.46623 * 175.00111 * 13 10 9 15 15 H 1.07998 * 120.00208 * 359.97438 * 14 13 10 16 16 C 1.37875 * 119.99953 * 179.97438 * 14 13 10 17 17 N 1.31519 * 119.99742 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00244 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47105 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47444 * 119.99795 * 18 16 14 21 21 H 1.48494 * 109.47239 * 239.99830 * 18 16 14 22 22 C 1.39856 * 112.12017 * 50.27209 * 8 7 5 23 23 C 1.39140 * 118.58727 * 160.18734 * 22 8 7 24 24 C 1.38064 * 120.23557 * 179.49690 * 23 22 8 25 25 C 1.38255 * 120.11698 * 0.03941 * 24 23 22 26 26 C 1.38174 * 120.03014 * 0.09026 * 25 24 23 27 27 C 1.38775 * 120.20630 * 359.95587 * 26 25 24 28 28 O 1.36152 * 118.75818 * 179.82085 * 27 26 25 29 29 H 1.08995 * 109.46982 * 60.00337 * 1 2 3 30 30 H 1.09008 * 109.46680 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46969 * 299.99892 * 1 2 3 32 32 H 1.08998 * 109.61700 * 296.88368 * 7 5 3 33 33 H 1.09006 * 109.61705 * 57.42326 * 7 5 3 34 34 H 1.08998 * 109.47326 * 170.35729 * 9 8 7 35 35 H 1.09005 * 109.46941 * 290.35943 * 9 8 7 36 36 H 1.09004 * 109.46718 * 65.31504 * 12 10 9 37 37 H 1.08997 * 109.46814 * 185.31831 * 12 10 9 38 38 H 1.09000 * 109.46750 * 305.31782 * 12 10 9 39 39 H 1.09000 * 109.46823 * 294.99303 * 13 10 9 40 40 H 1.08993 * 109.47147 * 54.99948 * 13 10 9 41 41 H 0.97005 * 119.99456 * 180.02562 * 17 16 14 42 42 H 1.07998 * 119.88581 * 359.49621 * 23 22 8 43 43 H 1.08008 * 119.94324 * 180.02562 * 24 23 22 44 44 H 1.08005 * 119.98429 * 180.11580 * 25 24 23 45 45 H 1.08002 * 119.89856 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5662 1.2750 -0.0006 6 1 3.9655 0.6960 -0.8334 7 6 4.1152 0.7282 1.3236 8 7 5.5816 0.7535 1.2684 9 6 6.1639 0.3502 2.5554 10 6 5.5268 -0.9631 3.0141 11 1 4.4446 -0.8438 3.0644 12 6 5.8721 -2.0725 2.0187 13 6 6.0638 -1.3342 4.3980 14 6 5.3470 -2.5600 4.9027 15 1 4.5845 -3.0273 4.2973 16 6 5.6647 -3.0849 6.1374 17 7 6.5936 -2.5161 6.8745 18 14 4.7757 -4.6038 6.7634 19 1 3.7825 -5.0479 5.7526 20 1 5.7596 -5.6903 7.0017 21 1 4.0779 -4.2807 8.0337 22 6 6.0720 1.9996 0.8649 23 6 7.3941 2.3209 1.1562 24 6 7.9164 3.5375 0.7646 25 6 7.1270 4.4436 0.0811 26 6 5.8122 4.1338 -0.2099 27 6 5.2795 2.9135 0.1810 28 8 3.9795 2.6404 -0.1179 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.7693 1.3514 2.1483 33 1 3.7721 -0.2965 1.4668 34 1 7.2389 0.2118 2.4403 35 1 5.9747 1.1249 3.2985 36 1 6.9463 -2.2565 2.0379 37 1 5.3421 -2.9846 2.2931 38 1 5.5737 -1.7666 1.0159 39 1 7.1320 -1.5402 4.3299 40 1 5.8966 -0.5061 5.0866 41 1 6.8173 -2.8856 7.7430 42 1 8.0139 1.6162 1.6905 43 1 8.9434 3.7818 0.9929 44 1 7.5383 5.3939 -0.2258 45 1 5.1974 4.8435 -0.7436 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895918245.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:02:02 Heat of formation + Delta-G solvation = -103.927292 kcal Electronic energy + Delta-G solvation = -27390.006722 eV Core-core repulsion = 23565.435803 eV Total energy + Delta-G solvation = -3824.570919 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.58151 -41.38814 -38.90072 -38.54095 -37.59322 -36.06915 -34.04974 -32.68685 -31.39036 -29.92236 -28.89716 -28.42481 -26.90530 -25.91665 -24.85500 -23.07941 -22.78678 -21.35356 -20.61147 -19.49608 -18.91098 -18.57653 -18.26884 -17.89789 -17.36468 -16.77865 -16.53480 -16.23324 -15.96472 -15.75811 -15.27043 -15.10784 -14.93140 -14.72807 -14.49433 -14.31765 -14.10995 -13.94595 -13.38744 -13.25868 -13.04332 -12.92333 -12.77814 -12.69479 -12.57496 -12.37943 -12.24873 -12.07187 -11.93838 -11.85347 -11.59196 -11.48968 -11.10896 -11.05703 -10.81892 -10.52891 -9.52601 -8.68308 -8.16772 -6.25334 0.33044 0.39069 0.78353 0.97705 1.40786 1.42185 1.54042 2.16421 2.42804 2.62053 2.87719 3.14740 3.17810 3.46858 3.55243 3.66604 3.92610 4.11323 4.15796 4.20408 4.24161 4.29694 4.30850 4.36619 4.42563 4.45675 4.54717 4.67971 4.75555 4.80717 4.90310 4.92113 5.08287 5.09296 5.26050 5.29050 5.41737 5.50191 5.52815 5.58758 5.67412 5.75986 5.82834 5.87798 5.89200 6.28111 6.31161 6.43786 6.90588 7.43231 8.95404 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.010629 B = 0.004095 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2633.718802 B = 6835.569817 C = 9065.029126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.348 6.348 3 C 0.480 3.520 4 O -0.514 6.514 5 C 0.103 3.897 6 H 0.140 0.860 7 C 0.028 3.972 8 N -0.476 5.476 9 C 0.076 3.924 10 C -0.080 4.080 11 H 0.060 0.940 12 C -0.118 4.118 13 C 0.034 3.966 14 C -0.525 4.525 15 H 0.063 0.937 16 C 0.000 4.000 17 N -0.935 5.935 18 Si 0.957 3.043 19 H -0.260 1.260 20 H -0.281 1.281 21 H -0.283 1.283 22 C 0.031 3.969 23 C -0.134 4.134 24 C -0.119 4.119 25 C -0.109 4.109 26 C -0.126 4.126 27 C 0.061 3.939 28 O -0.311 6.311 29 H 0.071 0.929 30 H 0.138 0.862 31 H 0.063 0.937 32 H 0.048 0.952 33 H 0.127 0.873 34 H 0.091 0.909 35 H 0.032 0.968 36 H 0.041 0.959 37 H 0.045 0.955 38 H 0.067 0.933 39 H -0.004 1.004 40 H -0.015 1.015 41 H 0.261 0.739 42 H 0.134 0.866 43 H 0.153 0.847 44 H 0.162 0.838 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.289 9.484 -17.236 20.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.264 6.264 3 C 0.322 3.678 4 O -0.402 6.402 5 C 0.046 3.954 6 H 0.158 0.842 7 C -0.099 4.099 8 N -0.190 5.190 9 C -0.049 4.049 10 C -0.098 4.098 11 H 0.079 0.921 12 C -0.175 4.175 13 C -0.003 4.003 14 C -0.564 4.564 15 H 0.082 0.918 16 C -0.197 4.197 17 N -0.576 5.576 18 Si 0.783 3.217 19 H -0.184 1.184 20 H -0.207 1.207 21 H -0.209 1.209 22 C -0.067 4.067 23 C -0.155 4.155 24 C -0.137 4.137 25 C -0.127 4.127 26 C -0.145 4.145 27 C 0.015 3.985 28 O -0.226 6.226 29 H 0.090 0.910 30 H 0.156 0.844 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.144 0.856 34 H 0.109 0.891 35 H 0.050 0.950 36 H 0.060 0.940 37 H 0.064 0.936 38 H 0.086 0.914 39 H 0.015 0.985 40 H 0.004 0.996 41 H 0.070 0.930 42 H 0.151 0.849 43 H 0.170 0.830 44 H 0.179 0.821 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -4.500 9.468 -17.454 20.360 hybrid contribution -0.677 -0.395 1.479 1.674 sum -5.177 9.072 -15.974 19.086 Atomic orbital electron populations 1.23712 0.73412 1.06359 1.03004 1.86488 1.25852 1.30770 1.83333 1.22800 0.90416 0.82140 0.72472 1.90688 1.67075 1.37293 1.45099 1.21849 0.88616 0.83434 1.01542 0.84244 1.22717 0.87866 1.04603 0.94721 1.58894 1.06089 1.23836 1.30229 1.22321 1.00228 0.96585 0.85784 1.21193 0.99159 0.93497 0.95984 0.92139 1.21546 1.00630 0.97445 0.97866 1.18990 0.95196 0.94833 0.91315 1.21637 1.20541 1.12033 1.02146 0.91842 1.25897 0.96041 1.00439 0.97370 1.70104 1.32976 1.42275 1.12202 0.85508 0.78657 0.79281 0.78295 1.18365 1.20658 1.20892 1.19183 0.95866 0.89593 1.02103 1.21181 0.93115 0.98817 1.02361 1.21314 1.01366 0.92778 0.98252 1.21242 0.92098 1.00868 0.98529 1.20719 0.96624 0.94663 1.02518 1.18909 0.82257 0.95822 1.01530 1.86174 1.25189 1.26068 1.85132 0.91019 0.84398 0.91845 0.93333 0.85559 0.89104 0.94968 0.94016 0.93636 0.91403 0.98546 0.99626 0.93015 0.84868 0.82955 0.82092 0.83922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.56 113.37 1.20 1.63 16 2 O -0.35 -7.71 10.57 -51.41 -0.54 -8.26 16 3 C 0.48 12.73 7.31 71.23 0.52 13.25 16 4 O -0.51 -16.45 16.27 28.33 0.46 -15.99 16 5 C 0.10 2.69 3.54 29.99 0.11 2.79 16 6 H 0.14 3.06 8.14 -2.38 -0.02 3.04 16 7 C 0.03 0.79 4.13 86.47 0.36 1.14 16 8 N -0.48 -13.90 4.07 -694.32 -2.82 -16.72 16 9 C 0.08 2.50 3.77 86.30 0.33 2.83 16 10 C -0.08 -3.03 1.85 -10.79 -0.02 -3.05 16 11 H 0.06 2.29 6.19 -2.39 -0.01 2.28 16 12 C -0.12 -4.09 8.72 71.98 0.63 -3.46 16 13 C 0.03 1.72 4.45 29.85 0.13 1.85 16 14 C -0.53 -28.52 8.47 25.60 0.22 -28.30 16 15 H 0.06 3.30 7.06 -2.91 -0.02 3.27 16 16 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 17 N -0.93 -55.90 13.29 21.45 0.28 -55.61 16 18 Si 0.96 43.39 29.54 68.60 2.03 45.41 16 19 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 20 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 21 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 22 C 0.03 0.87 5.81 38.25 0.22 1.09 16 23 C -0.13 -3.37 9.07 22.45 0.20 -3.17 16 24 C -0.12 -2.35 10.03 22.23 0.22 -2.12 16 25 C -0.11 -1.99 10.04 22.26 0.22 -1.77 16 26 C -0.13 -2.88 9.94 22.38 0.22 -2.65 16 27 C 0.06 1.71 6.47 22.57 0.15 1.85 16 28 O -0.31 -9.22 9.61 -76.43 -0.73 -9.95 16 29 H 0.07 1.03 8.13 -2.39 -0.02 1.01 16 30 H 0.14 1.28 8.14 -2.38 -0.02 1.26 16 31 H 0.06 1.04 8.13 -2.39 -0.02 1.02 16 32 H 0.05 1.51 8.13 -2.39 -0.02 1.49 16 33 H 0.13 3.40 6.24 -2.38 -0.01 3.38 16 34 H 0.09 2.89 6.42 -2.39 -0.02 2.88 16 35 H 0.03 1.14 8.12 -2.38 -0.02 1.12 16 36 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.04 1.67 7.11 -2.39 -0.02 1.66 16 38 H 0.07 2.00 7.46 -2.39 -0.02 1.99 16 39 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 40 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 41 H 0.26 14.74 8.31 -92.70 -0.77 13.97 16 42 H 0.13 3.27 6.12 -2.91 -0.02 3.25 16 43 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 44 H 0.16 1.84 8.06 -2.91 -0.02 1.81 16 45 H 0.14 2.80 8.06 -2.91 -0.02 2.78 16 Total: -1.00 -69.02 366.61 4.83 -64.20 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: 0.99 Total: 14.56 kcal Atomic # 6 Polarization: -22.81 SS G_CDS: 5.17 Total: -17.65 kcal Atomic # 7 Polarization: -69.79 SS G_CDS: -2.54 Total: -72.33 kcal Atomic # 8 Polarization: -33.38 SS G_CDS: -0.82 Total: -34.19 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Total: -69.02 4.83 -64.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895918245.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.728 kcal (2) G-P(sol) polarization free energy of solvation -69.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds