Wall clock time and date at job start Sat Apr 11 2020 00:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34224 * 116.99832 * 2 1 4 4 O 1.20821 * 120.00338 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99596 * 180.02562 * 3 2 1 6 6 C 1.53008 * 109.46880 * 180.02562 * 5 3 2 7 7 C 1.50694 * 109.46920 * 180.02562 * 6 5 3 8 8 C 1.37981 * 120.07308 * 266.35021 * 7 6 5 9 9 C 1.38338 * 120.14540 * 179.97438 * 8 7 6 10 10 C 1.38384 * 120.29358 * 0.05177 * 9 8 7 11 11 C 1.37934 * 120.14356 * 359.94790 * 10 9 8 12 12 C 1.39561 * 120.07953 * 86.33265 * 7 6 5 13 13 C 1.47844 * 120.13702 * 359.74527 * 12 7 6 14 14 O 1.21556 * 120.00453 * 310.31803 * 13 12 7 15 15 N 1.34785 * 119.99990 * 130.32200 * 13 12 7 16 16 C 1.46500 * 119.99588 * 4.27324 * 15 13 12 17 17 C 1.46497 * 119.99969 * 184.27429 * 15 13 12 18 18 H 1.08998 * 109.47370 * 359.97438 * 17 15 13 19 19 C 1.52999 * 109.46882 * 239.99946 * 17 15 13 20 20 C 1.50700 * 109.47050 * 120.00290 * 17 15 13 21 21 H 1.07999 * 119.99945 * 359.97438 * 20 17 15 22 22 C 1.37880 * 119.99869 * 180.02562 * 20 17 15 23 23 N 1.31516 * 119.99857 * 359.97438 * 22 20 17 24 24 Si 1.86798 * 119.99898 * 179.97438 * 22 20 17 25 25 H 1.48497 * 109.47453 * 59.99237 * 24 22 20 26 26 H 1.48500 * 109.47343 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.46702 * 299.99326 * 24 22 20 28 28 H 1.09003 * 109.47256 * 299.99266 * 1 2 3 29 29 H 1.08994 * 109.47321 * 59.99824 * 1 2 3 30 30 H 1.09005 * 109.47061 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47001 * 60.00527 * 5 3 2 32 32 H 1.09001 * 109.47404 * 300.00092 * 5 3 2 33 33 H 1.08991 * 109.47255 * 59.99626 * 6 5 3 34 34 H 1.09001 * 109.46726 * 299.99955 * 6 5 3 35 35 H 1.07994 * 119.92942 * 359.97438 * 8 7 6 36 36 H 1.08000 * 119.85497 * 180.02562 * 9 8 7 37 37 H 1.07997 * 119.92719 * 179.97438 * 10 9 8 38 38 H 1.08004 * 120.07371 * 180.02562 * 11 10 9 39 39 H 1.08996 * 109.47005 * 86.10886 * 16 15 13 40 40 H 1.09004 * 109.46731 * 206.10668 * 16 15 13 41 41 H 1.09004 * 109.47314 * 326.10640 * 16 15 13 42 42 H 1.09004 * 109.47249 * 180.02562 * 19 17 15 43 43 H 1.09001 * 109.47304 * 299.99928 * 19 17 15 44 44 H 1.09004 * 109.47639 * 60.00154 * 19 17 15 45 45 H 0.96996 * 119.99694 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0002 2.7421 0.0002 7 6 5.5050 2.8209 -0.0010 8 6 6.1925 2.9320 1.1901 9 6 7.5740 3.0039 1.1908 10 6 8.2756 2.9661 -0.0015 11 6 7.6005 2.8552 -1.1992 12 6 6.2066 2.7813 -1.2069 13 6 5.4767 2.6562 -2.4865 14 8 4.6305 1.7941 -2.6219 15 7 5.7496 3.4981 -3.5030 16 6 6.8330 4.4757 -3.3736 17 6 4.9628 3.4356 -4.7372 18 1 4.2091 2.6533 -4.6484 19 6 5.8867 3.1216 -5.9156 20 6 4.2860 4.7620 -4.9692 21 1 4.4275 5.5705 -4.2672 22 6 3.4854 4.9430 -6.0770 23 7 3.3128 3.9582 -6.9315 24 14 2.6459 6.5868 -6.3642 25 1 3.6728 7.6526 -6.4856 26 1 1.8485 6.5235 -7.6153 27 1 1.7495 6.8912 -5.2202 28 1 -0.3634 0.5137 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.9556 0.7809 -0.8908 32 1 3.9564 0.7805 0.8891 33 1 3.6108 3.2356 0.8905 34 1 3.6100 3.2367 -0.8893 35 1 5.6510 2.9629 2.1240 36 1 8.1075 3.0905 2.1259 37 1 9.3540 3.0231 0.0059 38 1 8.1492 2.8253 -2.1290 39 1 7.7763 4.0133 -3.6642 40 1 6.6318 5.3289 -4.0216 41 1 6.8969 4.8125 -2.3389 42 1 5.3014 3.0755 -6.8340 43 1 6.6408 3.9036 -6.0046 44 1 6.3763 2.1622 -5.7479 45 1 2.7499 4.0857 -7.7111 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900567344.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:02:08 Heat of formation + Delta-G solvation = -98.040533 kcal Electronic energy + Delta-G solvation = -27508.424543 eV Core-core repulsion = 23684.108894 eV Total energy + Delta-G solvation = -3824.315650 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.43971 -39.92805 -38.01887 -36.43728 -35.45922 -33.90041 -32.93571 -31.16991 -30.15121 -29.04747 -27.64125 -26.20482 -25.23213 -24.77782 -23.47158 -21.79787 -20.88791 -20.17033 -18.66044 -17.53296 -16.89081 -16.48419 -16.43988 -16.22413 -15.92039 -15.48629 -15.33188 -14.63471 -14.18810 -13.91540 -13.75501 -13.63311 -13.11045 -13.03794 -12.65802 -12.58327 -12.48428 -12.27568 -12.13480 -11.73020 -11.68596 -11.57306 -11.39675 -11.06769 -10.95129 -10.85748 -10.80953 -10.68876 -10.60570 -10.30464 -10.23688 -10.16878 -9.22263 -9.04203 -8.80418 -8.67047 -8.42083 -7.62218 -6.07457 -4.15463 1.14280 1.36306 2.44384 2.89892 3.27699 3.29579 3.33895 3.37256 3.76408 4.03631 4.40231 4.73699 4.83382 4.97257 5.00452 5.05491 5.14418 5.20657 5.23716 5.24694 5.32970 5.44471 5.51174 5.58122 5.68780 5.80234 5.90215 5.91902 6.03352 6.17572 6.30907 6.37460 6.39320 6.45022 6.56017 6.62509 6.74984 6.82466 6.93748 7.05283 7.40009 7.51670 7.70916 7.94654 8.00436 8.18338 8.48789 8.80565 8.99751 9.51016 10.97827 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.008845 B = 0.005157 C = 0.003681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3164.786714 B = 5428.640060 C = 7605.316159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.362 6.362 3 C 0.466 3.534 4 O -0.509 6.509 5 C -0.109 4.109 6 C -0.069 4.069 7 C -0.040 4.040 8 C -0.122 4.122 9 C -0.108 4.108 10 C -0.129 4.129 11 C -0.089 4.089 12 C -0.108 4.108 13 C 0.546 3.454 14 O -0.544 6.544 15 N -0.582 5.582 16 C 0.081 3.919 17 C 0.259 3.741 18 H 0.064 0.936 19 C -0.146 4.146 20 C -0.527 4.527 21 H 0.059 0.941 22 C 0.066 3.934 23 N -0.887 5.887 24 Si 0.898 3.102 25 H -0.276 1.276 26 H -0.286 1.286 27 H -0.276 1.276 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.098 0.902 31 H 0.133 0.867 32 H 0.097 0.903 33 H 0.077 0.923 34 H 0.090 0.910 35 H 0.125 0.875 36 H 0.122 0.878 37 H 0.124 0.876 38 H 0.130 0.870 39 H 0.043 0.957 40 H 0.082 0.918 41 H 0.056 0.944 42 H 0.093 0.907 43 H 0.029 0.971 44 H 0.011 0.989 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.567 -4.486 15.582 17.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.310 3.690 4 O -0.396 6.396 5 C -0.146 4.146 6 C -0.106 4.106 7 C -0.041 4.041 8 C -0.140 4.140 9 C -0.126 4.126 10 C -0.147 4.147 11 C -0.108 4.108 12 C -0.111 4.111 13 C 0.332 3.668 14 O -0.424 6.424 15 N -0.312 5.312 16 C -0.063 4.063 17 C 0.159 3.841 18 H 0.082 0.918 19 C -0.204 4.204 20 C -0.566 4.566 21 H 0.077 0.923 22 C -0.136 4.136 23 N -0.525 5.525 24 Si 0.725 3.275 25 H -0.202 1.202 26 H -0.211 1.211 27 H -0.202 1.202 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.116 0.884 31 H 0.150 0.850 32 H 0.115 0.885 33 H 0.095 0.905 34 H 0.108 0.892 35 H 0.143 0.857 36 H 0.140 0.860 37 H 0.142 0.858 38 H 0.147 0.853 39 H 0.061 0.939 40 H 0.100 0.900 41 H 0.075 0.925 42 H 0.112 0.888 43 H 0.048 0.952 44 H 0.030 0.970 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.774 -4.665 15.270 16.979 hybrid contribution -0.538 1.090 -0.260 1.243 sum 5.236 -3.576 15.010 16.294 Atomic orbital electron populations 1.23219 0.76798 1.03336 1.02506 1.86503 1.23146 1.33884 1.84389 1.23862 0.92297 0.81107 0.71735 1.90661 1.67332 1.36306 1.45346 1.21487 0.87026 0.99293 1.06832 1.20376 0.90444 0.95119 1.04657 1.19775 0.95326 0.97168 0.91835 1.20972 0.94290 1.01534 0.97193 1.21208 0.94115 0.99208 0.98066 1.21055 0.99872 1.01510 0.92267 1.21399 0.92995 0.97620 0.98749 1.20133 0.94076 1.02870 0.94055 1.18250 0.82825 0.82330 0.83357 1.90664 1.34295 1.35131 1.82297 1.48197 1.33470 1.32902 1.16624 1.21748 0.89311 0.93693 1.01509 1.18973 0.89261 0.98355 0.77528 0.91817 1.22082 0.99003 0.96371 1.02962 1.21271 1.29166 0.97843 1.08292 0.92271 1.24875 0.96090 0.96957 0.95720 1.69868 1.38374 1.31322 1.12954 0.86563 0.79601 0.83709 0.77593 1.20206 1.21149 1.20194 0.92219 0.91758 0.88374 0.84970 0.88454 0.90479 0.89183 0.85686 0.85991 0.85802 0.85260 0.93860 0.89969 0.92506 0.88802 0.95157 0.96979 0.92623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 10.56 101.05 1.07 1.48 16 2 O -0.36 -5.40 10.57 -39.24 -0.41 -5.81 16 3 C 0.47 7.74 7.96 36.01 0.29 8.03 16 4 O -0.51 -9.81 15.73 -18.75 -0.29 -10.10 16 5 C -0.11 -1.63 5.55 -27.88 -0.15 -1.78 16 6 C -0.07 -1.08 3.93 -27.88 -0.11 -1.19 16 7 C -0.04 -0.59 5.16 -104.23 -0.54 -1.12 16 8 C -0.12 -1.40 9.67 -39.64 -0.38 -1.78 16 9 C -0.11 -1.09 10.04 -39.49 -0.40 -1.49 16 10 C -0.13 -1.38 10.03 -39.64 -0.40 -1.77 16 11 C -0.09 -1.18 7.80 -39.19 -0.31 -1.49 16 12 C -0.11 -1.75 4.85 -104.97 -0.51 -2.26 16 13 C 0.55 11.24 6.30 -12.33 -0.08 11.16 16 14 O -0.54 -12.75 12.92 5.32 0.07 -12.69 16 15 N -0.58 -12.39 2.75 -176.38 -0.49 -12.87 16 16 C 0.08 1.38 8.04 59.85 0.48 1.87 16 17 C 0.26 6.58 2.63 -69.08 -0.18 6.40 16 18 H 0.06 1.88 6.91 -51.93 -0.36 1.52 16 19 C -0.15 -3.47 8.97 37.16 0.33 -3.14 16 20 C -0.53 -14.26 7.96 -34.44 -0.27 -14.54 16 21 H 0.06 1.58 7.40 -52.49 -0.39 1.19 16 22 C 0.07 1.81 5.30 -17.82 -0.09 1.72 16 23 N -0.89 -25.15 11.32 55.43 0.63 -24.52 16 24 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 27 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 28 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 29 H 0.06 0.81 8.13 -51.93 -0.42 0.39 16 30 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.13 2.26 5.88 -51.93 -0.31 1.96 16 32 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.08 1.08 8.02 -51.93 -0.42 0.66 16 34 H 0.09 1.77 6.94 -51.93 -0.36 1.41 16 35 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 36 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 37 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 38 H 0.13 1.61 6.43 -52.48 -0.34 1.27 16 39 H 0.04 0.63 7.17 -51.93 -0.37 0.26 16 40 H 0.08 1.49 7.08 -51.93 -0.37 1.12 16 41 H 0.06 0.86 6.24 -51.93 -0.32 0.54 16 42 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 43 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16 44 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 45 H 0.26 7.14 8.31 -40.82 -0.34 6.81 16 LS Contribution 367.88 15.07 5.54 5.54 Total: -1.00 -32.50 367.88 -7.69 -40.19 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -6.46 Total: 3.91 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: -1.26 Total: 0.08 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: 0.14 Total: -37.39 kcal Atomic # 8 Polarization: -27.96 SS G_CDS: -0.64 Total: -28.60 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.50 -7.69 -40.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900567344.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.849 kcal (2) G-P(sol) polarization free energy of solvation -32.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds