Wall clock time and date at job start Sat Apr 11 2020 00:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34227 * 117.00124 * 2 1 4 4 O 1.20824 * 120.00152 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00242 * 180.02562 * 3 2 1 6 6 C 1.53002 * 109.47526 * 180.02562 * 5 3 2 7 7 C 1.50702 * 109.47081 * 179.97438 * 6 5 3 8 8 C 1.37978 * 120.07336 * 258.39381 * 7 6 5 9 9 C 1.38332 * 120.14051 * 180.02562 * 8 7 6 10 10 C 1.38380 * 120.29774 * 0.02562 * 9 8 7 11 11 C 1.37939 * 120.14204 * 359.75008 * 10 9 8 12 12 C 1.39552 * 120.07112 * 78.42085 * 7 6 5 13 13 C 1.47845 * 120.14873 * 359.94895 * 12 7 6 14 14 O 1.21563 * 119.99856 * 47.75534 * 13 12 7 15 15 N 1.34772 * 120.00454 * 227.75998 * 13 12 7 16 16 C 1.46504 * 119.99975 * 5.39537 * 15 13 12 17 17 C 1.46510 * 120.00255 * 185.39565 * 15 13 12 18 18 H 1.08996 * 109.47023 * 0.02562 * 17 15 13 19 19 C 1.53005 * 109.46577 * 119.99951 * 17 15 13 20 20 C 1.50695 * 109.47022 * 239.99849 * 17 15 13 21 21 H 1.07998 * 120.00254 * 0.02562 * 20 17 15 22 22 C 1.37882 * 119.99464 * 179.97438 * 20 17 15 23 23 N 1.31511 * 120.00480 * 0.02562 * 22 20 17 24 24 Si 1.86800 * 119.99585 * 180.02562 * 22 20 17 25 25 H 1.48501 * 109.47404 * 90.00229 * 24 22 20 26 26 H 1.48502 * 109.46890 * 210.00121 * 24 22 20 27 27 H 1.48499 * 109.47431 * 329.99520 * 24 22 20 28 28 H 1.08991 * 109.47173 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46740 * 299.99655 * 1 2 3 30 30 H 1.08998 * 109.47022 * 59.99697 * 1 2 3 31 31 H 1.09000 * 109.47204 * 60.00201 * 5 3 2 32 32 H 1.09005 * 109.47026 * 300.00309 * 5 3 2 33 33 H 1.09000 * 109.46892 * 59.99794 * 6 5 3 34 34 H 1.08994 * 109.46760 * 299.99753 * 6 5 3 35 35 H 1.07997 * 119.92910 * 0.02562 * 8 7 6 36 36 H 1.08009 * 119.85417 * 179.97438 * 9 8 7 37 37 H 1.07997 * 119.92797 * 179.97438 * 10 9 8 38 38 H 1.08005 * 120.07500 * 180.27768 * 11 10 9 39 39 H 1.08995 * 109.46904 * 271.97609 * 16 15 13 40 40 H 1.08994 * 109.46819 * 31.97968 * 16 15 13 41 41 H 1.09001 * 109.46945 * 151.97416 * 16 15 13 42 42 H 1.08995 * 109.47147 * 299.99518 * 19 17 15 43 43 H 1.08998 * 109.46213 * 180.02562 * 19 17 15 44 44 H 1.08996 * 109.47076 * 60.00484 * 19 17 15 45 45 H 0.96991 * 120.00397 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0002 2.7421 0.0002 7 6 5.5052 2.8208 0.0002 8 6 6.1831 3.0963 1.1700 9 6 7.5645 3.1694 1.1715 10 6 8.2755 2.9678 0.0017 11 6 7.6103 2.6871 -1.1736 12 6 6.2162 2.6159 -1.1830 13 6 5.4964 2.3199 -2.4400 14 8 4.5428 2.9985 -2.7687 15 7 5.8973 1.2977 -3.2215 16 6 6.9695 0.4072 -2.7699 17 6 5.2610 1.0769 -4.5226 18 1 4.4928 1.8331 -4.6843 19 6 6.3138 1.1755 -5.6284 20 6 4.6321 -0.2923 -4.5483 21 1 4.6993 -0.9338 -3.6820 22 6 3.9701 -0.7257 -5.6775 23 7 3.8879 0.0556 -6.7321 24 14 3.1900 -2.4227 -5.7091 25 1 1.7891 -2.3327 -5.2246 26 1 3.2005 -2.9464 -7.0987 27 1 3.9602 -3.3382 -4.8295 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 3.9557 0.7810 -0.8908 32 1 3.9564 0.7805 0.8892 33 1 3.6108 3.2356 0.8906 34 1 3.6102 3.2367 -0.8893 35 1 5.6341 3.2551 2.0864 36 1 8.0904 3.3857 2.0898 37 1 9.3539 3.0267 0.0096 38 1 8.1666 2.5255 -2.0852 39 1 7.9333 0.8170 -3.0718 40 1 6.9358 0.3196 -1.6840 41 1 6.8368 -0.5775 -3.2181 42 1 6.7686 2.1659 -5.6097 43 1 5.8403 1.0117 -6.5963 44 1 7.0823 0.4196 -5.4668 45 1 3.4218 -0.2491 -7.5263 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900567345.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:02:12 Heat of formation + Delta-G solvation = -98.131895 kcal Electronic energy + Delta-G solvation = -27805.620462 eV Core-core repulsion = 23981.300850 eV Total energy + Delta-G solvation = -3824.319611 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.45841 -39.92583 -38.01888 -36.44079 -35.44270 -33.93736 -32.95460 -31.15421 -30.15656 -29.08080 -27.62531 -26.21181 -25.24858 -24.78152 -23.45906 -21.77877 -20.86249 -20.23185 -18.69435 -17.51969 -16.86283 -16.52794 -16.42426 -16.33326 -15.87415 -15.44250 -15.34583 -14.59274 -14.15236 -13.94772 -13.83252 -13.57608 -13.18981 -12.96009 -12.73388 -12.60633 -12.49267 -12.34388 -12.05856 -11.73006 -11.67306 -11.56479 -11.39022 -11.12295 -10.95328 -10.91890 -10.85010 -10.70959 -10.65925 -10.31724 -10.24114 -10.18574 -9.22130 -9.01353 -8.79681 -8.66200 -8.43699 -7.62619 -6.08554 -4.16512 1.13002 1.36950 2.40253 2.88449 3.26231 3.27805 3.33235 3.35216 3.78858 4.01123 4.38687 4.73087 4.83642 4.95612 4.98418 5.05423 5.15768 5.18618 5.23083 5.26050 5.29574 5.42703 5.51705 5.57834 5.65428 5.77286 5.88129 5.91466 6.02405 6.05076 6.36073 6.36731 6.40571 6.45533 6.54908 6.64741 6.73924 6.81333 6.94469 7.03824 7.39373 7.51072 7.69735 7.91936 7.98980 8.17537 8.47687 8.80501 8.99602 9.49979 10.96842 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.009040 B = 0.005901 C = 0.003953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3096.746782 B = 4744.137253 C = 7081.443308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.359 6.359 3 C 0.468 3.532 4 O -0.508 6.508 5 C -0.106 4.106 6 C -0.084 4.084 7 C -0.039 4.039 8 C -0.123 4.123 9 C -0.107 4.107 10 C -0.129 4.129 11 C -0.087 4.087 12 C -0.110 4.110 13 C 0.542 3.458 14 O -0.539 6.539 15 N -0.585 5.585 16 C 0.083 3.917 17 C 0.257 3.743 18 H 0.063 0.937 19 C -0.146 4.146 20 C -0.525 4.525 21 H 0.060 0.940 22 C 0.066 3.934 23 N -0.887 5.887 24 Si 0.897 3.103 25 H -0.280 1.280 26 H -0.286 1.286 27 H -0.274 1.274 28 H 0.099 0.901 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.110 0.890 32 H 0.102 0.898 33 H 0.078 0.922 34 H 0.112 0.888 35 H 0.125 0.875 36 H 0.122 0.878 37 H 0.124 0.876 38 H 0.129 0.871 39 H 0.043 0.957 40 H 0.055 0.945 41 H 0.082 0.918 42 H 0.010 0.990 43 H 0.094 0.906 44 H 0.030 0.970 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.499 0.973 15.773 16.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.276 6.276 3 C 0.311 3.689 4 O -0.395 6.395 5 C -0.144 4.144 6 C -0.121 4.121 7 C -0.040 4.040 8 C -0.141 4.141 9 C -0.126 4.126 10 C -0.147 4.147 11 C -0.105 4.105 12 C -0.113 4.113 13 C 0.329 3.671 14 O -0.418 6.418 15 N -0.315 5.315 16 C -0.061 4.061 17 C 0.158 3.842 18 H 0.081 0.919 19 C -0.205 4.205 20 C -0.564 4.564 21 H 0.078 0.922 22 C -0.137 4.137 23 N -0.525 5.525 24 Si 0.724 3.276 25 H -0.206 1.206 26 H -0.211 1.211 27 H -0.198 1.198 28 H 0.117 0.883 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.129 0.871 32 H 0.120 0.880 33 H 0.097 0.903 34 H 0.130 0.870 35 H 0.143 0.857 36 H 0.140 0.860 37 H 0.142 0.858 38 H 0.147 0.853 39 H 0.061 0.939 40 H 0.073 0.927 41 H 0.101 0.899 42 H 0.030 0.970 43 H 0.112 0.888 44 H 0.049 0.951 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.681 1.590 15.355 16.131 hybrid contribution -0.450 -0.983 -0.127 1.088 sum 4.231 0.608 15.228 15.817 Atomic orbital electron populations 1.23234 0.76616 1.03504 1.02435 1.86518 1.23285 1.33617 1.84156 1.23706 0.92118 0.81234 0.71860 1.90649 1.67253 1.36296 1.45302 1.21340 0.87584 0.99507 1.05963 1.20625 0.90690 0.94747 1.06058 1.19781 0.95281 0.96880 0.92044 1.20989 0.94346 1.01386 0.97337 1.21212 0.94079 0.99147 0.98113 1.21057 0.99895 1.01134 0.92646 1.21379 0.92937 0.97564 0.98655 1.20115 0.93946 1.02950 0.94323 1.18301 0.83880 0.81511 0.83414 1.90733 1.27583 1.50361 1.73150 1.48226 1.35992 1.26999 1.20302 1.21700 0.89641 0.95945 0.98806 1.18980 0.91455 0.97834 0.75968 0.91877 1.22088 0.98394 0.96415 1.03558 1.21286 1.35003 1.00245 0.99818 0.92183 1.24879 0.95845 0.97554 0.95394 1.69871 1.42319 1.36297 1.04016 0.86522 0.79828 0.83988 0.77238 1.20609 1.21146 1.19845 0.88278 0.92191 0.91710 0.87144 0.87987 0.90333 0.87016 0.85690 0.85996 0.85801 0.85281 0.93884 0.92676 0.89939 0.97050 0.88775 0.95082 0.92677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 10.56 101.05 1.07 1.51 16 2 O -0.36 -5.66 10.57 -39.25 -0.41 -6.07 16 3 C 0.47 7.88 7.96 36.00 0.29 8.17 16 4 O -0.51 -9.66 15.73 -18.75 -0.29 -9.95 16 5 C -0.11 -1.60 5.72 -27.88 -0.16 -1.76 16 6 C -0.08 -1.31 4.09 -27.88 -0.11 -1.42 16 7 C -0.04 -0.57 5.17 -104.23 -0.54 -1.11 16 8 C -0.12 -1.40 9.66 -39.64 -0.38 -1.79 16 9 C -0.11 -1.09 10.04 -39.49 -0.40 -1.49 16 10 C -0.13 -1.39 10.03 -39.64 -0.40 -1.79 16 11 C -0.09 -1.16 8.03 -39.19 -0.31 -1.48 16 12 C -0.11 -1.79 4.73 -104.97 -0.50 -2.29 16 13 C 0.54 11.20 5.82 -12.33 -0.07 11.13 16 14 O -0.54 -13.26 14.19 5.31 0.08 -13.18 16 15 N -0.58 -12.19 2.75 -176.37 -0.49 -12.68 16 16 C 0.08 1.37 8.03 59.85 0.48 1.85 16 17 C 0.26 6.46 2.63 -69.08 -0.18 6.28 16 18 H 0.06 1.85 6.91 -51.93 -0.36 1.50 16 19 C -0.15 -3.43 8.97 37.16 0.33 -3.10 16 20 C -0.52 -13.88 7.97 -34.44 -0.27 -14.16 16 21 H 0.06 1.56 7.37 -52.49 -0.39 1.17 16 22 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 23 N -0.89 -24.89 11.32 55.43 0.63 -24.27 16 24 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 26 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 27 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 28 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 30 H 0.06 0.86 8.13 -51.93 -0.42 0.44 16 31 H 0.11 1.91 7.23 -51.93 -0.38 1.54 16 32 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.08 1.07 7.94 -51.93 -0.41 0.66 16 34 H 0.11 2.18 5.92 -51.93 -0.31 1.87 16 35 H 0.13 1.14 8.02 -52.49 -0.42 0.72 16 36 H 0.12 0.90 8.06 -52.48 -0.42 0.47 16 37 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 38 H 0.13 1.65 6.60 -52.48 -0.35 1.30 16 39 H 0.04 0.62 7.06 -51.93 -0.37 0.25 16 40 H 0.05 0.79 6.67 -51.93 -0.35 0.45 16 41 H 0.08 1.45 7.05 -51.93 -0.37 1.08 16 42 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 43 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16 44 H 0.03 0.67 7.67 -51.93 -0.40 0.27 16 45 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 369.78 15.07 5.57 5.57 Total: -1.00 -32.50 369.78 -7.69 -40.19 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -6.50 Total: 4.28 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: -1.26 Total: 0.24 kcal Atomic # 7 Polarization: -37.08 SS G_CDS: 0.14 Total: -36.94 kcal Atomic # 8 Polarization: -28.57 SS G_CDS: -0.63 Total: -29.20 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.50 -7.69 -40.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900567345.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.941 kcal (2) G-P(sol) polarization free energy of solvation -32.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds