Wall clock time and date at job start Sat Apr 11 2020 00:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47836 * 2 1 4 4 C 1.53002 * 109.47165 * 240.00035 * 2 1 3 5 5 C 1.50706 * 109.47153 * 64.99782 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72576 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72423 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72459 * 9 7 5 13 13 C 1.52998 * 109.47026 * 120.00356 * 2 1 3 14 14 N 1.46896 * 109.47357 * 294.99646 * 13 2 1 15 15 C 1.46897 * 111.00246 * 180.02562 * 14 13 2 16 16 C 1.53002 * 109.47032 * 179.97438 * 15 14 13 17 17 S 1.81402 * 109.47028 * 179.97438 * 16 15 14 18 18 O 1.42094 * 108.58075 * 294.49044 * 17 16 15 19 19 O 1.42097 * 108.57932 * 65.51727 * 17 16 15 20 20 C 1.81397 * 101.92013 * 180.02562 * 17 16 15 21 21 C 1.53180 * 109.54665 * 304.55620 * 20 17 16 22 22 C 1.53087 * 109.16733 * 183.15400 * 21 20 17 23 23 O 1.42908 * 109.41687 * 57.60915 * 22 21 20 24 24 C 1.42903 * 114.09506 * 298.84324 * 23 22 21 25 25 C 1.53100 * 109.41552 * 61.15895 * 24 23 22 26 26 H 1.09001 * 109.46970 * 300.00039 * 1 2 3 27 27 H 1.09003 * 109.46843 * 59.99176 * 1 2 3 28 28 H 1.08990 * 109.47503 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47178 * 305.00572 * 4 2 1 30 30 H 1.08993 * 109.47411 * 185.00254 * 4 2 1 31 31 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 32 32 H 1.09001 * 109.47074 * 54.99862 * 13 2 1 33 33 H 1.09002 * 109.47150 * 174.99607 * 13 2 1 34 34 H 1.00901 * 111.00285 * 56.04255 * 14 13 2 35 35 H 1.08999 * 109.47308 * 300.00064 * 15 14 13 36 36 H 1.09002 * 109.47010 * 60.00170 * 15 14 13 37 37 H 1.08999 * 109.47278 * 300.00268 * 16 15 14 38 38 H 1.09002 * 109.46933 * 60.00308 * 16 15 14 39 39 H 1.08993 * 109.54573 * 64.82354 * 20 17 16 40 40 H 1.09000 * 109.52064 * 303.05945 * 21 20 17 41 41 H 1.09000 * 109.52171 * 63.24256 * 21 20 17 42 42 H 1.08998 * 109.48087 * 297.62576 * 22 21 20 43 43 H 1.08997 * 109.48252 * 177.59212 * 22 21 20 44 44 H 1.09002 * 109.48136 * 301.17650 * 24 23 22 45 45 H 1.09003 * 109.48940 * 181.14423 * 24 23 22 46 46 H 1.08999 * 109.52058 * 182.48948 * 25 24 23 47 47 H 1.08993 * 109.52238 * 62.29129 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4767 6 1 1.0806 0.9745 -2.3756 7 6 1.9922 -0.4021 -3.7284 8 7 2.6796 -1.5166 -3.8511 9 14 1.4986 0.5629 -5.2497 10 1 0.1739 0.0910 -5.7270 11 1 1.4183 2.0075 -4.9150 12 1 2.5110 0.3575 -6.3164 13 6 2.0399 -0.7213 1.2492 14 7 1.6514 0.0373 2.4456 15 6 2.1258 -0.6267 3.6671 16 6 1.7035 0.1914 4.8891 17 16 2.2886 -0.6290 6.3975 18 8 1.6142 -1.8730 6.5271 19 8 3.7094 -0.6062 6.4033 20 6 1.6869 0.4915 7.6909 21 6 2.2054 1.9079 7.4239 22 6 1.7585 2.8295 8.5617 23 8 2.2422 2.3180 9.8053 24 6 1.7525 1.0155 10.1304 25 6 2.1993 0.0209 9.0557 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5140 -0.8899 28 1 -0.3634 -1.0275 0.0005 29 1 1.6053 -1.7198 -1.2952 30 1 3.1262 -0.7995 -1.2056 31 1 2.9362 -2.0177 -3.0611 32 1 1.6053 -1.7199 1.2950 33 1 3.1263 -0.7996 1.2055 34 1 0.6529 0.1793 2.4753 35 1 1.6921 -1.6248 3.7300 36 1 3.2127 -0.7039 3.6399 37 1 2.1375 1.1892 4.8260 38 1 0.6166 0.2689 4.9165 39 1 0.5969 0.4951 7.6921 40 1 3.2941 1.8936 7.3731 41 1 1.8006 2.2720 6.4797 42 1 0.6698 2.8751 8.5862 43 1 2.1607 3.8294 8.3988 44 1 0.6636 1.0373 10.1754 45 1 2.1503 0.7084 11.0977 46 1 1.7898 -0.9644 9.2784 47 1 3.2878 -0.0315 9.0377 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119245267.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:02:16 Heat of formation + Delta-G solvation = -143.367324 kcal Electronic energy + Delta-G solvation = -24906.353189 eV Core-core repulsion = 21215.515973 eV Total energy + Delta-G solvation = -3690.837216 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.82508 -37.43988 -37.35630 -36.39266 -34.82180 -34.54296 -32.52673 -31.82409 -30.12342 -26.58182 -26.23433 -25.38057 -24.32477 -22.98200 -22.15614 -21.21855 -19.39442 -19.12071 -17.75312 -16.95593 -16.77374 -16.70338 -16.35737 -16.10614 -15.86128 -15.34446 -14.76274 -14.57239 -14.45922 -14.27432 -13.88455 -13.72160 -13.19132 -13.16276 -12.78695 -12.61404 -12.44516 -12.35257 -12.25425 -12.02897 -11.83106 -11.71900 -11.67724 -11.61598 -11.38538 -11.13469 -11.05610 -10.78670 -10.71598 -10.28671 -10.10199 -9.99707 -9.89957 -9.49805 -8.50764 -8.41235 -8.30239 -6.33209 -4.01689 -0.47568 2.30051 3.11494 3.29518 3.43873 3.46320 3.47850 3.63370 3.75213 3.94389 4.14936 4.27031 4.31851 4.40181 4.51488 4.57518 4.57608 4.77363 4.81369 4.84634 4.93823 5.07518 5.09092 5.25435 5.30346 5.33590 5.42326 5.43809 5.45902 5.60684 5.65006 5.88178 6.08621 6.28601 6.39107 6.58939 6.71514 6.95988 6.97479 7.09736 7.38708 7.40596 7.57753 8.24938 8.49449 8.91555 9.69908 11.07227 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.031346 B = 0.002037 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.031450 B =13739.170053 C =14177.554391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.077 4.077 3 H 0.068 0.932 4 C 0.014 3.986 5 C -0.594 4.594 6 H 0.050 0.950 7 C 0.012 3.988 8 N -0.915 5.915 9 Si 1.071 2.929 10 H -0.289 1.289 11 H -0.289 1.289 12 H -0.285 1.285 13 C 0.058 3.942 14 N -0.681 5.681 15 C 0.068 3.932 16 C -0.609 4.609 17 S 2.419 3.581 18 O -0.937 6.937 19 O -0.929 6.929 20 C -0.575 4.575 21 C -0.150 4.150 22 C 0.068 3.932 23 O -0.379 6.379 24 C 0.069 3.931 25 C -0.144 4.144 26 H 0.032 0.968 27 H 0.065 0.935 28 H 0.041 0.959 29 H 0.006 0.994 30 H 0.007 0.993 31 H 0.268 0.732 32 H 0.028 0.972 33 H 0.071 0.929 34 H 0.341 0.659 35 H 0.044 0.956 36 H 0.088 0.912 37 H 0.144 0.856 38 H 0.131 0.869 39 H 0.138 0.862 40 H 0.095 0.905 41 H 0.093 0.907 42 H 0.055 0.945 43 H 0.103 0.897 44 H 0.056 0.944 45 H 0.102 0.898 46 H 0.091 0.909 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.632 6.546 29.264 30.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.096 4.096 3 H 0.086 0.914 4 C -0.024 4.024 5 C -0.633 4.633 6 H 0.068 0.932 7 C -0.192 4.192 8 N -0.552 5.552 9 Si 0.899 3.101 10 H -0.216 1.216 11 H -0.215 1.215 12 H -0.211 1.211 13 C -0.070 4.070 14 N -0.313 5.313 15 C -0.063 4.063 16 C -0.739 4.739 17 S 2.602 3.398 18 O -0.934 6.934 19 O -0.926 6.926 20 C -0.684 4.684 21 C -0.188 4.188 22 C -0.010 4.010 23 O -0.297 6.297 24 C -0.008 4.008 25 C -0.183 4.183 26 H 0.051 0.949 27 H 0.084 0.916 28 H 0.060 0.940 29 H 0.024 0.976 30 H 0.025 0.975 31 H 0.079 0.921 32 H 0.046 0.954 33 H 0.089 0.911 34 H 0.160 0.840 35 H 0.062 0.938 36 H 0.106 0.894 37 H 0.162 0.838 38 H 0.149 0.851 39 H 0.157 0.843 40 H 0.114 0.886 41 H 0.111 0.889 42 H 0.074 0.926 43 H 0.121 0.879 44 H 0.074 0.926 45 H 0.121 0.879 46 H 0.109 0.891 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.389 6.278 27.773 28.675 hybrid contribution -1.522 -0.252 1.420 2.097 sum -4.912 6.026 29.194 30.211 Atomic orbital electron populations 1.21746 0.96426 1.00536 1.00476 1.21091 0.95048 1.00080 0.93389 0.91358 1.19252 0.95465 0.95458 0.92204 1.22040 1.38777 1.10246 0.92206 0.93161 1.25838 0.94706 0.97196 1.01428 1.70750 1.35838 1.15044 1.33557 0.83521 0.76300 0.74931 0.75325 1.21568 1.21515 1.21058 1.22248 1.00756 0.94679 0.89344 1.60597 1.19825 1.50178 1.00719 1.21580 1.01890 0.94393 0.88419 1.30411 1.12633 1.14189 1.16632 1.08216 0.76357 0.77011 0.78251 1.93593 1.76476 1.37932 1.85384 1.93596 1.26740 1.86602 1.85648 1.30268 1.11897 1.11833 1.14399 1.22187 1.03630 0.91769 1.01226 1.22518 0.98636 0.97076 0.82767 1.87975 1.71578 1.32014 1.38147 1.22505 0.98585 0.82290 0.97454 1.22053 1.03333 1.00844 0.92073 0.94877 0.91576 0.93997 0.97610 0.97483 0.92126 0.95380 0.91089 0.84008 0.93773 0.89388 0.83807 0.85070 0.84347 0.88599 0.88885 0.92632 0.87890 0.92608 0.87945 0.89075 0.88945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.46 8.77 37.16 0.33 -2.13 16 2 C -0.08 -1.56 2.55 -90.62 -0.23 -1.79 16 3 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 4 C 0.01 0.35 3.76 -27.88 -0.10 0.24 16 5 C -0.59 -16.74 8.41 -34.44 -0.29 -17.03 16 6 H 0.05 1.39 7.06 -52.49 -0.37 1.02 16 7 C 0.01 0.34 5.46 -17.82 -0.10 0.24 16 8 N -0.92 -28.24 13.65 55.43 0.76 -27.49 16 9 Si 1.07 25.46 29.90 -169.99 -5.08 20.37 16 10 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 C 0.06 0.99 5.14 -3.83 -0.02 0.97 16 14 N -0.68 -9.43 6.50 -113.78 -0.74 -10.17 16 15 C 0.07 0.80 5.69 -3.82 -0.02 0.78 16 16 C -0.61 -4.70 5.48 37.16 0.20 -4.50 16 17 S 2.42 20.97 4.26 -107.50 -0.46 20.51 16 18 O -0.94 -11.28 18.10 -57.83 -1.05 -12.32 16 19 O -0.93 -11.27 18.03 -57.83 -1.04 -12.31 16 20 C -0.58 -3.19 2.71 -26.54 -0.07 -3.27 16 21 C -0.15 -0.76 5.04 -26.59 -0.13 -0.89 16 22 C 0.07 0.35 6.84 37.20 0.25 0.61 16 23 O -0.38 -2.83 10.77 -35.23 -0.38 -3.20 16 24 C 0.07 0.38 6.84 37.21 0.25 0.63 16 25 C -0.14 -0.87 5.42 -26.58 -0.14 -1.02 16 26 H 0.03 0.49 6.68 -51.93 -0.35 0.14 16 27 H 0.07 1.32 6.95 -51.93 -0.36 0.96 16 28 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.01 0.15 8.01 -51.93 -0.42 -0.27 16 30 H 0.01 0.19 8.00 -51.93 -0.42 -0.23 16 31 H 0.27 8.26 7.22 -40.82 -0.29 7.96 16 32 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.34 4.25 6.98 -39.29 -0.27 3.98 16 35 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.14 0.88 6.87 -51.92 -0.36 0.52 16 38 H 0.13 0.68 8.14 -51.92 -0.42 0.26 16 39 H 0.14 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.10 0.56 8.11 -51.93 -0.42 0.14 16 41 H 0.09 0.26 6.61 -51.93 -0.34 -0.08 16 42 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 43 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 45 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 47 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 381.14 15.07 5.74 5.74 Total: -1.00 -36.84 381.14 -10.64 -47.48 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -8.31 Total: -1.47 kcal Atomic # 6 Polarization: -27.07 SS G_CDS: -0.08 Total: -27.14 kcal Atomic # 7 Polarization: -37.67 SS G_CDS: 0.02 Total: -37.66 kcal Atomic # 8 Polarization: -25.37 SS G_CDS: -2.47 Total: -27.84 kcal Atomic # 14 Polarization: 25.46 SS G_CDS: -5.08 Total: 20.37 kcal Atomic # 16 Polarization: 20.97 SS G_CDS: -0.46 Total: 20.51 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.84 -10.64 -47.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119245267.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.886 kcal (2) G-P(sol) polarization free energy of solvation -36.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds