Wall clock time and date at job start Sat Apr 11 2020 00:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34230 * 116.99750 * 2 1 4 4 O 1.20828 * 119.99974 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99774 * 179.97438 * 3 2 1 6 6 C 1.53004 * 109.47064 * 184.39884 * 5 3 2 7 7 H 1.09002 * 109.46922 * 54.64088 * 6 5 3 8 8 C 1.52998 * 109.47126 * 174.63820 * 6 5 3 9 9 N 1.46501 * 109.47004 * 294.64048 * 6 5 3 10 10 C 1.46498 * 120.00266 * 305.92097 * 9 6 5 11 11 C 1.50709 * 109.46979 * 264.51687 * 10 9 6 12 12 C 1.38235 * 119.99729 * 274.90337 * 11 10 9 13 13 C 1.38233 * 119.99809 * 179.76248 * 12 11 10 14 14 C 1.38241 * 119.99932 * 0.51492 * 13 12 11 15 15 C 1.38241 * 119.99913 * 359.74015 * 14 13 12 16 16 C 1.38234 * 120.00011 * 0.02562 * 15 14 13 17 17 C 1.34778 * 119.99940 * 125.92081 * 9 6 5 18 18 O 1.21280 * 119.99931 * 184.89017 * 17 9 6 19 19 C 1.50698 * 120.00088 * 4.89122 * 17 9 6 20 20 C 1.50695 * 109.47383 * 184.57391 * 19 17 9 21 21 H 1.08002 * 119.99783 * 359.97438 * 20 19 17 22 22 C 1.37881 * 120.00181 * 180.02562 * 20 19 17 23 23 N 1.31510 * 120.00021 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99851 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47398 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.46885 * 119.99719 * 24 22 20 27 27 H 1.48494 * 109.47003 * 239.99399 * 24 22 20 28 28 H 1.09000 * 109.46824 * 60.00292 * 1 2 3 29 29 H 1.08999 * 109.46551 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47266 * 300.00000 * 1 2 3 31 31 H 1.09005 * 109.46981 * 64.40055 * 5 3 2 32 32 H 1.08994 * 109.47309 * 304.39972 * 5 3 2 33 33 H 1.09002 * 109.47020 * 177.29043 * 8 6 5 34 34 H 1.09000 * 109.47260 * 297.29573 * 8 6 5 35 35 H 1.09009 * 109.46650 * 57.29844 * 8 6 5 36 36 H 1.09000 * 109.47489 * 144.51482 * 10 9 6 37 37 H 1.09002 * 109.47080 * 24.51227 * 10 9 6 38 38 H 1.07997 * 119.99778 * 0.02562 * 12 11 10 39 39 H 1.08000 * 120.00111 * 180.23410 * 13 12 11 40 40 H 1.07995 * 119.99964 * 179.72526 * 14 13 12 41 41 H 1.07996 * 119.99672 * 179.97438 * 15 14 13 42 42 H 1.07994 * 119.99845 * 179.97438 * 16 15 14 43 43 H 1.08999 * 109.47159 * 304.57563 * 19 17 9 44 44 H 1.09000 * 109.46997 * 64.57355 * 19 17 9 45 45 H 0.96997 * 120.00288 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0003 2.7379 0.1111 7 1 3.5361 3.1893 0.9880 8 6 5.5226 2.8095 0.2463 9 7 3.5821 3.4635 -1.0909 10 6 3.9678 2.9706 -2.4155 11 6 5.2169 3.6801 -2.8713 12 6 5.1239 4.9063 -3.5028 13 6 6.2698 5.5593 -3.9164 14 6 7.5082 4.9812 -3.7082 15 6 7.6008 3.7526 -3.0815 16 6 6.4552 3.1018 -2.6634 17 6 2.8423 4.5845 -0.9782 18 8 2.4213 5.1357 -1.9731 19 6 2.5384 5.1529 0.3839 20 6 1.6102 6.3314 0.2408 21 1 1.2743 6.6384 -0.7387 22 6 1.1906 7.0185 1.3602 23 7 1.6000 6.6450 2.5528 24 14 0.0406 8.4798 1.1826 25 1 -0.2693 8.6942 -0.2538 26 1 -1.2168 8.2133 1.9264 27 1 0.6941 9.6938 1.7342 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 3.9528 0.8503 -0.9260 32 1 3.9592 0.7143 0.8487 33 1 5.8360 3.8531 0.2766 34 1 5.8296 2.3110 1.1657 35 1 5.9868 2.3155 -0.6075 36 1 3.1618 3.1628 -3.1237 37 1 4.1576 1.8985 -2.3631 38 1 4.1562 5.3559 -3.6690 39 1 6.1974 6.5190 -4.4064 40 1 8.4032 5.4894 -4.0354 41 1 8.5683 3.3008 -2.9192 42 1 6.5276 2.1417 -2.1742 43 1 2.0631 4.3886 0.9988 44 1 3.4653 5.4759 0.8579 45 1 1.3046 7.1281 3.3404 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143198637.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:02:26 Heat of formation + Delta-G solvation = -91.509715 kcal Electronic energy + Delta-G solvation = -28049.697328 eV Core-core repulsion = 24225.664875 eV Total energy + Delta-G solvation = -3824.032452 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.49973 -39.55101 -38.31003 -36.54728 -35.60909 -32.99088 -32.43157 -30.90109 -30.62106 -29.00706 -28.71134 -26.89628 -25.91670 -23.26220 -22.42099 -22.20291 -21.19726 -20.46688 -18.29774 -17.38259 -16.81660 -16.71425 -16.45237 -16.13340 -15.78954 -15.29300 -15.03625 -14.67974 -14.36528 -14.20209 -13.67505 -13.47803 -13.31629 -13.04514 -12.81657 -12.76087 -12.52830 -12.21740 -12.11788 -11.98695 -11.89147 -11.67876 -11.31794 -11.09587 -11.04944 -10.94198 -10.65483 -10.63697 -10.58159 -10.42732 -10.15928 -9.84575 -9.05921 -8.79989 -8.71525 -8.32921 -8.30357 -8.07939 -5.94805 -3.91944 1.47765 1.59399 2.47097 2.83196 3.39035 3.45388 3.52961 3.61003 3.83926 4.11377 4.56643 4.70488 4.82354 4.95965 5.02496 5.12689 5.14135 5.16432 5.19400 5.29175 5.32602 5.43307 5.47617 5.50208 5.59907 5.62032 5.65803 5.77233 5.86856 5.92140 6.10229 6.17841 6.25302 6.36767 6.40288 6.57271 6.59580 6.71481 6.86722 7.14569 7.19493 7.36725 7.54068 7.99874 8.06830 8.10835 8.51200 9.17463 9.36696 9.71365 11.18050 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.008488 B = 0.005805 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3298.085885 B = 4822.439314 C = 7155.476185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.370 6.370 3 C 0.445 3.555 4 O -0.468 6.468 5 C -0.125 4.125 6 C 0.145 3.855 7 H 0.113 0.887 8 C -0.167 4.167 9 N -0.615 5.615 10 C 0.151 3.849 11 C -0.095 4.095 12 C -0.092 4.092 13 C -0.123 4.123 14 C -0.124 4.124 15 C -0.129 4.129 16 C -0.112 4.112 17 C 0.536 3.464 18 O -0.545 6.545 19 C 0.009 3.991 20 C -0.497 4.497 21 H 0.073 0.927 22 C 0.053 3.947 23 N -0.903 5.903 24 Si 0.897 3.103 25 H -0.271 1.271 26 H -0.285 1.285 27 H -0.285 1.285 28 H 0.061 0.939 29 H 0.095 0.905 30 H 0.063 0.937 31 H 0.105 0.895 32 H 0.113 0.887 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.132 0.868 39 H 0.118 0.882 40 H 0.116 0.884 41 H 0.117 0.883 42 H 0.121 0.879 43 H 0.055 0.945 44 H 0.041 0.959 45 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.008 -15.247 -6.690 19.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.288 6.288 3 C 0.286 3.714 4 O -0.351 6.351 5 C -0.163 4.163 6 C 0.040 3.960 7 H 0.131 0.869 8 C -0.225 4.225 9 N -0.350 5.350 10 C 0.028 3.972 11 C -0.096 4.096 12 C -0.111 4.111 13 C -0.141 4.141 14 C -0.142 4.142 15 C -0.147 4.147 16 C -0.130 4.130 17 C 0.329 3.671 18 O -0.421 6.421 19 C -0.030 4.030 20 C -0.536 4.536 21 H 0.091 0.909 22 C -0.147 4.147 23 N -0.543 5.543 24 Si 0.725 3.275 25 H -0.196 1.196 26 H -0.211 1.211 27 H -0.211 1.211 28 H 0.080 0.920 29 H 0.114 0.886 30 H 0.082 0.918 31 H 0.123 0.877 32 H 0.131 0.869 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.102 0.898 37 H 0.091 0.909 38 H 0.150 0.850 39 H 0.136 0.864 40 H 0.134 0.866 41 H 0.135 0.865 42 H 0.138 0.862 43 H 0.073 0.927 44 H 0.059 0.941 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 9.469 -14.558 -7.041 18.739 hybrid contribution -0.709 0.749 0.150 1.042 sum 8.760 -13.808 -6.890 17.745 Atomic orbital electron populations 1.23195 0.76604 1.03025 1.02864 1.86456 1.23280 1.34091 1.84950 1.23730 0.92144 0.81577 0.73947 1.90872 1.66577 1.35545 1.42125 1.21896 0.88338 1.00264 1.05830 1.20990 0.95250 0.89099 0.90645 0.86915 1.22386 0.94573 1.03525 1.02018 1.48221 1.54852 1.27822 1.04075 1.20179 0.94021 0.96411 0.86616 1.20327 0.95199 0.95971 0.98128 1.21365 0.99364 0.94213 0.96138 1.21180 0.92641 0.99811 1.00506 1.21096 0.97383 0.95914 0.99821 1.21025 0.98036 0.95805 0.99869 1.21046 0.92080 0.99981 0.99912 1.21848 0.73902 0.77393 0.93961 1.90476 1.51348 1.59724 1.40531 1.19233 0.98320 0.97234 0.88214 1.21211 1.26833 1.11699 0.93878 0.90935 1.24971 0.96707 0.97799 0.95184 1.69967 1.45617 1.41055 0.97669 0.86441 0.80501 0.82291 0.78281 1.19579 1.21140 1.21132 0.92003 0.88609 0.91783 0.87742 0.86927 0.91308 0.91704 0.91739 0.89790 0.90866 0.84985 0.86376 0.86633 0.86545 0.86153 0.92705 0.94130 0.93204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 10.56 101.05 1.07 1.49 16 2 O -0.37 -4.87 10.57 -39.26 -0.41 -5.28 16 3 C 0.45 6.70 7.84 36.01 0.28 6.98 16 4 O -0.47 -9.33 13.26 -18.75 -0.25 -9.58 16 5 C -0.12 -1.42 5.16 -27.88 -0.14 -1.56 16 6 C 0.14 2.12 2.11 -67.93 -0.14 1.97 16 7 H 0.11 1.98 5.61 -51.93 -0.29 1.69 16 8 C -0.17 -1.96 8.57 37.16 0.32 -1.64 16 9 N -0.61 -10.94 1.71 -167.46 -0.29 -11.23 16 10 C 0.15 2.28 5.00 -5.19 -0.03 2.25 16 11 C -0.09 -1.39 5.11 -104.62 -0.53 -1.93 16 12 C -0.09 -1.50 9.48 -39.58 -0.38 -1.87 16 13 C -0.12 -1.73 10.05 -39.58 -0.40 -2.13 16 14 C -0.12 -1.51 10.05 -39.58 -0.40 -1.91 16 15 C -0.13 -1.48 10.05 -39.58 -0.40 -1.88 16 16 C -0.11 -1.35 7.97 -39.58 -0.32 -1.66 16 17 C 0.54 12.69 6.62 -10.99 -0.07 12.62 16 18 O -0.54 -14.38 13.75 5.56 0.08 -14.31 16 19 C 0.01 0.24 3.92 -29.04 -0.11 0.13 16 20 C -0.50 -15.06 8.92 -34.44 -0.31 -15.37 16 21 H 0.07 2.30 6.76 -52.49 -0.35 1.94 16 22 C 0.05 1.58 5.46 -17.82 -0.10 1.49 16 23 N -0.90 -27.30 13.29 55.43 0.74 -26.56 16 24 Si 0.90 22.96 29.54 -169.99 -5.02 17.94 16 25 H -0.27 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 27 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 28 H 0.06 0.75 8.13 -51.93 -0.42 0.32 16 29 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.77 8.13 -51.93 -0.42 0.35 16 31 H 0.10 0.96 6.24 -51.93 -0.32 0.63 16 32 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.64 4.41 -51.92 -0.23 0.42 16 36 H 0.08 1.43 7.50 -51.93 -0.39 1.04 16 37 H 0.07 0.85 5.94 -51.93 -0.31 0.54 16 38 H 0.13 2.45 6.93 -52.49 -0.36 2.08 16 39 H 0.12 1.48 8.06 -52.49 -0.42 1.05 16 40 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 41 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 42 H 0.12 1.15 6.27 -52.49 -0.33 0.82 16 43 H 0.06 1.53 6.23 -51.93 -0.32 1.20 16 44 H 0.04 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 365.67 15.07 5.51 5.51 Total: -1.00 -36.27 365.67 -7.58 -43.85 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -6.28 Total: 2.69 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: -1.66 Total: -3.04 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: 0.45 Total: -37.79 kcal Atomic # 8 Polarization: -28.58 SS G_CDS: -0.59 Total: -29.17 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -5.02 Total: 17.94 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -36.27 -7.58 -43.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143198637.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.661 kcal (2) G-P(sol) polarization free energy of solvation -36.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds