Wall clock time and date at job start Sat Apr 11 2020 00:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34230 * 116.99750 * 2 1 4 4 O 1.20828 * 119.99974 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99774 * 179.97438 * 3 2 1 6 6 C 1.53004 * 109.47064 * 184.39884 * 5 3 2 7 7 H 1.09002 * 109.46922 * 54.64088 * 6 5 3 8 8 C 1.52998 * 109.47126 * 174.63820 * 6 5 3 9 9 N 1.46501 * 109.47004 * 294.64048 * 6 5 3 10 10 C 1.46498 * 120.00266 * 305.92097 * 9 6 5 11 11 C 1.50709 * 109.46979 * 264.51687 * 10 9 6 12 12 C 1.38235 * 119.99729 * 274.90337 * 11 10 9 13 13 C 1.38233 * 119.99809 * 179.76248 * 12 11 10 14 14 C 1.38241 * 119.99932 * 0.51492 * 13 12 11 15 15 C 1.38241 * 119.99913 * 359.74015 * 14 13 12 16 16 C 1.38234 * 120.00011 * 0.02562 * 15 14 13 17 17 C 1.34778 * 119.99940 * 125.92081 * 9 6 5 18 18 O 1.21280 * 119.99931 * 184.89017 * 17 9 6 19 19 C 1.50698 * 120.00088 * 4.89122 * 17 9 6 20 20 C 1.50695 * 109.47383 * 184.57391 * 19 17 9 21 21 H 1.08002 * 119.99783 * 359.97438 * 20 19 17 22 22 C 1.37881 * 120.00181 * 180.02562 * 20 19 17 23 23 N 1.31510 * 120.00021 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99851 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47398 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.46885 * 119.99719 * 24 22 20 27 27 H 1.48494 * 109.47003 * 239.99399 * 24 22 20 28 28 H 1.09000 * 109.46824 * 60.00292 * 1 2 3 29 29 H 1.08999 * 109.46551 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47266 * 300.00000 * 1 2 3 31 31 H 1.09005 * 109.46981 * 64.40055 * 5 3 2 32 32 H 1.08994 * 109.47309 * 304.39972 * 5 3 2 33 33 H 1.09002 * 109.47020 * 177.29043 * 8 6 5 34 34 H 1.09000 * 109.47260 * 297.29573 * 8 6 5 35 35 H 1.09009 * 109.46650 * 57.29844 * 8 6 5 36 36 H 1.09000 * 109.47489 * 144.51482 * 10 9 6 37 37 H 1.09002 * 109.47080 * 24.51227 * 10 9 6 38 38 H 1.07997 * 119.99778 * 0.02562 * 12 11 10 39 39 H 1.08000 * 120.00111 * 180.23410 * 13 12 11 40 40 H 1.07995 * 119.99964 * 179.72526 * 14 13 12 41 41 H 1.07996 * 119.99672 * 179.97438 * 15 14 13 42 42 H 1.07994 * 119.99845 * 179.97438 * 16 15 14 43 43 H 1.08999 * 109.47159 * 304.57563 * 19 17 9 44 44 H 1.09000 * 109.46997 * 64.57355 * 19 17 9 45 45 H 0.96997 * 120.00288 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0003 2.7379 0.1111 7 1 3.5361 3.1893 0.9880 8 6 5.5226 2.8095 0.2463 9 7 3.5821 3.4635 -1.0909 10 6 3.9678 2.9706 -2.4155 11 6 5.2169 3.6801 -2.8713 12 6 5.1239 4.9063 -3.5028 13 6 6.2698 5.5593 -3.9164 14 6 7.5082 4.9812 -3.7082 15 6 7.6008 3.7526 -3.0815 16 6 6.4552 3.1018 -2.6634 17 6 2.8423 4.5845 -0.9782 18 8 2.4213 5.1357 -1.9731 19 6 2.5384 5.1529 0.3839 20 6 1.6102 6.3314 0.2408 21 1 1.2743 6.6384 -0.7387 22 6 1.1906 7.0185 1.3602 23 7 1.6000 6.6450 2.5528 24 14 0.0406 8.4798 1.1826 25 1 -0.2693 8.6942 -0.2538 26 1 -1.2168 8.2133 1.9264 27 1 0.6941 9.6938 1.7342 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 3.9528 0.8503 -0.9260 32 1 3.9592 0.7143 0.8487 33 1 5.8360 3.8531 0.2766 34 1 5.8296 2.3110 1.1657 35 1 5.9868 2.3155 -0.6075 36 1 3.1618 3.1628 -3.1237 37 1 4.1576 1.8985 -2.3631 38 1 4.1562 5.3559 -3.6690 39 1 6.1974 6.5190 -4.4064 40 1 8.4032 5.4894 -4.0354 41 1 8.5683 3.3008 -2.9192 42 1 6.5276 2.1417 -2.1742 43 1 2.0631 4.3886 0.9988 44 1 3.4653 5.4759 0.8579 45 1 1.3046 7.1281 3.3404 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143198637.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:02:25 Heat of formation + Delta-G solvation = -114.032224 kcal Electronic energy + Delta-G solvation = -28050.673977 eV Core-core repulsion = 24225.664875 eV Total energy + Delta-G solvation = -3825.009101 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.75617 -40.83775 -39.62020 -37.88820 -36.98712 -35.15331 -33.70694 -32.22583 -31.73263 -30.76521 -29.92792 -27.87972 -27.36406 -25.25246 -23.46012 -23.41294 -22.35406 -21.74747 -19.74037 -18.64945 -18.50976 -17.97447 -17.79696 -17.51334 -17.28195 -16.69193 -16.49089 -16.25476 -15.72544 -15.62951 -14.93143 -14.66806 -14.43664 -14.36395 -14.18820 -14.13804 -14.03294 -13.53144 -13.36722 -13.28972 -13.01660 -12.92002 -12.83537 -12.69807 -12.56431 -12.43684 -12.17452 -12.04388 -11.99587 -11.75195 -11.60796 -11.43161 -11.26427 -10.63053 -10.46002 -9.73921 -9.65720 -9.48688 -8.26160 -6.32163 0.43497 0.56326 1.31248 1.32860 1.33828 1.49102 1.81804 2.00390 2.22218 2.41779 3.02001 3.08154 3.61707 3.76723 3.89487 3.93924 4.07368 4.21339 4.23152 4.30615 4.32425 4.32897 4.38331 4.49217 4.55170 4.64999 4.68702 4.70947 4.79529 4.83246 4.94833 5.07967 5.09752 5.15907 5.22326 5.32390 5.40544 5.51754 5.61194 5.66122 5.68074 5.76868 5.85047 6.09119 6.18636 6.59463 6.80289 6.87298 7.33547 7.57556 8.86697 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.008488 B = 0.005805 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3298.085885 B = 4822.439314 C = 7155.476185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.361 6.361 3 C 0.443 3.557 4 O -0.530 6.530 5 C -0.114 4.114 6 C 0.134 3.866 7 H 0.074 0.926 8 C -0.156 4.156 9 N -0.601 5.601 10 C 0.152 3.848 11 C -0.109 4.109 12 C -0.127 4.127 13 C -0.140 4.140 14 C -0.122 4.122 15 C -0.122 4.122 16 C -0.103 4.103 17 C 0.535 3.465 18 O -0.587 6.587 19 C 0.023 3.977 20 C -0.531 4.531 21 H 0.047 0.953 22 C 0.009 3.991 23 N -0.924 5.924 24 Si 0.962 3.038 25 H -0.278 1.278 26 H -0.271 1.271 27 H -0.268 1.268 28 H 0.048 0.952 29 H 0.138 0.862 30 H 0.050 0.950 31 H 0.142 0.858 32 H 0.158 0.842 33 H 0.038 0.962 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.052 0.948 37 H 0.121 0.879 38 H 0.089 0.911 39 H 0.120 0.880 40 H 0.144 0.856 41 H 0.156 0.844 42 H 0.159 0.841 43 H 0.039 0.961 44 H 0.025 0.975 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.917 -18.076 -6.321 23.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.278 6.278 3 C 0.286 3.714 4 O -0.418 6.418 5 C -0.152 4.152 6 C 0.030 3.970 7 H 0.092 0.908 8 C -0.214 4.214 9 N -0.333 5.333 10 C 0.030 3.970 11 C -0.111 4.111 12 C -0.146 4.146 13 C -0.158 4.158 14 C -0.140 4.140 15 C -0.140 4.140 16 C -0.121 4.121 17 C 0.326 3.674 18 O -0.467 6.467 19 C -0.017 4.017 20 C -0.570 4.570 21 H 0.065 0.935 22 C -0.189 4.189 23 N -0.564 5.564 24 Si 0.787 3.213 25 H -0.203 1.203 26 H -0.196 1.196 27 H -0.193 1.193 28 H 0.067 0.933 29 H 0.156 0.844 30 H 0.069 0.931 31 H 0.159 0.841 32 H 0.176 0.824 33 H 0.057 0.943 34 H 0.116 0.884 35 H 0.110 0.890 36 H 0.071 0.929 37 H 0.139 0.861 38 H 0.107 0.893 39 H 0.138 0.862 40 H 0.161 0.839 41 H 0.174 0.826 42 H 0.177 0.823 43 H 0.057 0.943 44 H 0.043 0.957 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 12.424 -17.463 -6.649 22.439 hybrid contribution -1.583 1.551 0.052 2.217 sum 10.841 -15.912 -6.597 20.353 Atomic orbital electron populations 1.23403 0.75822 1.05315 1.01601 1.86461 1.24078 1.32954 1.84279 1.24575 0.93678 0.81095 0.72022 1.90881 1.68147 1.37585 1.45159 1.22005 0.85575 0.97996 1.09580 1.21245 0.97349 0.90657 0.87701 0.90779 1.22321 0.91603 1.02468 1.04973 1.48009 1.52816 1.25854 1.06650 1.20350 0.93584 0.98931 0.84124 1.20282 0.96171 0.95619 0.98998 1.21245 0.98409 0.95957 0.98977 1.21317 0.93107 1.00248 1.01115 1.21467 0.97138 0.96444 0.98995 1.21518 0.99511 0.95043 0.97927 1.21393 0.90659 1.01092 0.98939 1.21203 0.74991 0.79187 0.91969 1.90449 1.53532 1.61690 1.41018 1.18921 0.96660 0.95947 0.90147 1.21395 1.28622 1.13770 0.93201 0.93462 1.25783 0.98010 1.00450 0.94695 1.70043 1.46121 1.42046 0.98235 0.85447 0.78837 0.79103 0.77950 1.20292 1.19595 1.19289 0.93318 0.84446 0.93141 0.84077 0.82411 0.94262 0.88368 0.88952 0.92919 0.86087 0.89258 0.86165 0.83852 0.82617 0.82325 0.94330 0.95719 0.92495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 10.56 113.37 1.20 1.91 16 2 O -0.36 -8.86 10.57 -51.42 -0.54 -9.41 16 3 C 0.44 12.96 7.84 71.24 0.56 13.52 16 4 O -0.53 -22.18 13.26 21.96 0.29 -21.89 16 5 C -0.11 -2.20 5.16 29.85 0.15 -2.05 16 6 C 0.13 3.78 2.11 44.99 0.09 3.88 16 7 H 0.07 2.71 5.61 -2.39 -0.01 2.69 16 8 C -0.16 -3.16 8.57 71.98 0.62 -2.54 16 9 N -0.60 -21.99 1.71 -802.12 -1.37 -23.36 16 10 C 0.15 4.56 5.00 85.64 0.43 4.99 16 11 C -0.11 -3.15 5.11 -19.86 -0.10 -3.25 16 12 C -0.13 -4.39 9.48 22.27 0.21 -4.18 16 13 C -0.14 -4.01 10.05 22.27 0.22 -3.79 16 14 C -0.12 -2.67 10.05 22.27 0.22 -2.45 16 15 C -0.12 -2.25 10.05 22.27 0.22 -2.03 16 16 C -0.10 -2.06 7.97 22.27 0.18 -1.89 16 17 C 0.54 27.33 6.62 87.66 0.58 27.91 16 18 O -0.59 -33.98 13.75 -3.03 -0.04 -34.02 16 19 C 0.02 1.30 3.92 29.10 0.11 1.41 16 20 C -0.53 -34.37 8.92 25.60 0.23 -34.14 16 21 H 0.05 3.23 6.76 -2.91 -0.02 3.21 16 22 C 0.01 0.53 5.46 84.66 0.46 1.00 16 23 N -0.92 -57.51 13.29 21.45 0.28 -57.23 16 24 Si 0.96 48.58 29.54 68.60 2.03 50.61 16 25 H -0.28 -14.24 7.11 99.48 0.71 -13.53 16 26 H -0.27 -12.99 7.11 99.48 0.71 -12.28 16 27 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 28 H 0.05 1.20 8.13 -2.39 -0.02 1.19 16 29 H 0.14 1.84 8.14 -2.39 -0.02 1.83 16 30 H 0.05 1.25 8.13 -2.39 -0.02 1.23 16 31 H 0.14 1.75 6.24 -2.38 -0.01 1.74 16 32 H 0.16 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.09 1.32 4.41 -2.38 -0.01 1.31 16 36 H 0.05 1.92 7.50 -2.39 -0.02 1.90 16 37 H 0.12 2.38 5.94 -2.39 -0.01 2.37 16 38 H 0.09 3.78 6.93 -2.91 -0.02 3.76 16 39 H 0.12 3.20 8.06 -2.91 -0.02 3.18 16 40 H 0.14 2.30 8.06 -2.91 -0.02 2.27 16 41 H 0.16 1.73 8.06 -2.91 -0.02 1.71 16 42 H 0.16 1.93 6.27 -2.91 -0.02 1.91 16 43 H 0.04 2.33 6.23 -2.39 -0.01 2.31 16 44 H 0.02 1.47 8.14 -2.39 -0.02 1.45 16 45 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -89.11 365.67 7.04 -82.07 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: 1.00 Total: 14.92 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: 5.39 Total: -1.69 kcal Atomic # 7 Polarization: -79.50 SS G_CDS: -1.09 Total: -80.59 kcal Atomic # 8 Polarization: -65.03 SS G_CDS: -0.29 Total: -65.32 kcal Atomic # 14 Polarization: 48.58 SS G_CDS: 2.03 Total: 50.61 kcal Total: -89.11 7.04 -82.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143198637.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.963 kcal (2) G-P(sol) polarization free energy of solvation -89.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds