Wall clock time and date at job start Sat Apr 11 2020 00:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34845 * 116.99638 * 2 1 4 4 O 1.21560 * 120.00174 * 359.97438 * 3 2 1 5 5 C 1.47014 * 119.99508 * 180.02562 * 3 2 1 6 6 C 1.39571 * 120.48639 * 354.49339 * 5 3 2 7 7 C 1.37797 * 120.13637 * 180.02562 * 6 5 3 8 8 C 1.39419 * 121.20078 * 359.97438 * 7 6 5 9 9 N 1.39148 * 119.50206 * 179.97438 * 8 7 6 10 10 C 1.46508 * 119.99922 * 359.97438 * 9 8 7 11 11 H 1.08994 * 109.54047 * 325.00145 * 10 9 8 12 12 C 1.53177 * 109.54050 * 85.17606 * 10 9 8 13 13 C 1.53287 * 109.06249 * 62.97470 * 12 10 9 14 14 O 1.42900 * 109.46019 * 57.55231 * 13 12 10 15 15 C 1.42902 * 114.09665 * 298.83657 * 14 13 12 16 16 C 1.53095 * 109.41436 * 61.16544 * 15 14 13 17 17 H 1.08999 * 109.52336 * 62.28949 * 16 15 14 18 18 C 1.52994 * 109.52304 * 182.48225 * 16 15 14 19 19 C 1.38435 * 120.99559 * 359.97438 * 8 7 6 20 20 C 1.40498 * 119.77446 * 0.02911 * 19 8 7 21 21 C 1.40944 * 120.57010 * 180.25000 * 20 19 8 22 22 H 1.08001 * 119.99679 * 145.16817 * 21 20 19 23 23 C 1.40250 * 119.99750 * 325.16962 * 21 20 19 24 24 N 1.30642 * 119.99643 * 168.85482 * 23 21 20 25 25 Si 1.86795 * 120.00100 * 348.85047 * 23 21 20 26 26 H 1.48508 * 109.47029 * 86.42358 * 25 23 21 27 27 H 1.48503 * 109.47175 * 206.41992 * 25 23 21 28 28 H 1.48504 * 109.47293 * 326.42336 * 25 23 21 29 29 H 1.08996 * 109.47520 * 59.99841 * 1 2 3 30 30 H 1.09000 * 109.47120 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47107 * 299.99917 * 1 2 3 32 32 H 1.07998 * 119.93003 * 359.97438 * 6 5 3 33 33 H 1.08001 * 119.40210 * 179.97438 * 7 6 5 34 34 H 0.96996 * 120.00321 * 180.02562 * 9 8 7 35 35 H 1.09005 * 109.51990 * 182.79183 * 12 10 9 36 36 H 1.08996 * 109.52873 * 302.97999 * 12 10 9 37 37 H 1.09001 * 109.45256 * 297.55147 * 13 12 10 38 38 H 1.08996 * 109.46413 * 177.55302 * 13 12 10 39 39 H 1.09004 * 109.48339 * 301.17927 * 15 14 13 40 40 H 1.08996 * 109.48334 * 181.14289 * 15 14 13 41 41 H 1.09004 * 109.47062 * 179.67942 * 18 16 15 42 42 H 1.08999 * 109.47541 * 299.68542 * 18 16 15 43 43 H 1.09003 * 109.47054 * 59.68671 * 18 16 15 44 44 H 1.08001 * 120.11485 * 180.02562 * 19 8 7 45 45 H 0.96994 * 119.99763 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0641 1.2015 0.0000 4 8 1.4020 2.2210 -0.0005 5 6 3.5323 1.2784 -0.0006 6 6 4.3021 0.1199 0.1143 7 6 5.6777 0.2004 0.1135 8 6 6.3293 1.4276 -0.0014 9 7 7.7202 1.4679 0.0023 10 6 8.4887 0.2268 0.1268 11 1 7.9603 -0.4649 0.7829 12 6 8.6619 -0.4095 -1.2558 13 6 9.4740 0.5389 -2.1451 14 8 10.7337 0.8093 -1.5270 15 6 10.6331 1.4465 -0.2519 16 6 9.8696 0.5358 0.7133 17 1 10.4225 -0.3932 0.8520 18 6 9.7065 1.2413 2.0610 19 6 5.6134 2.6066 -0.1190 20 6 4.2088 2.5726 -0.1227 21 6 3.4633 3.7623 -0.2469 22 1 2.5289 3.7599 -0.7884 23 6 3.9350 4.9491 0.3328 24 7 3.3680 6.0891 0.0402 25 14 5.3737 4.8996 1.5231 26 1 6.6477 4.9677 0.7629 27 1 5.2886 6.0561 2.4508 28 1 5.3288 3.6359 2.3018 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.8186 -0.8416 0.2048 33 1 6.2618 -0.7036 0.2035 34 1 8.1810 2.3177 -0.0768 35 1 9.1905 -1.3576 -1.1568 36 1 7.6828 -0.5823 -1.7026 37 1 8.9257 1.4718 -2.2766 38 1 9.6383 0.0737 -3.1170 39 1 10.1001 2.3913 -0.3586 40 1 11.6325 1.6350 0.1402 41 1 9.1578 0.5945 2.7457 42 1 10.6895 1.4608 2.4776 43 1 9.1557 2.1714 1.9200 44 1 6.1328 3.5494 -0.2076 45 1 3.6945 6.9099 0.4408 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170826640.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:02:46 Heat of formation + Delta-G solvation = -113.275669 kcal Electronic energy + Delta-G solvation = -27660.209082 eV Core-core repulsion = 23835.232788 eV Total energy + Delta-G solvation = -3824.976295 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.08779 -39.19208 -37.67190 -35.69251 -35.03843 -33.75525 -32.88526 -31.53312 -30.49358 -28.47060 -27.07836 -26.53277 -25.57028 -24.59230 -22.61651 -21.94351 -21.37333 -20.00817 -18.92725 -17.42517 -16.93886 -16.82596 -16.16873 -15.86307 -15.70891 -15.44070 -15.32491 -14.83817 -14.58533 -14.23282 -13.85613 -13.58997 -13.22072 -12.82652 -12.73525 -12.55688 -12.47862 -12.32504 -12.11456 -11.95044 -11.83634 -11.61253 -11.47832 -11.17733 -11.15149 -10.86195 -10.81327 -10.63347 -10.35841 -10.22127 -9.93617 -9.80089 -9.48933 -9.33211 -9.07101 -8.88501 -7.71152 -7.02045 -6.65990 -4.60397 2.12857 2.63886 3.02897 3.13083 3.26310 3.75223 3.79295 3.84539 3.88691 3.92052 4.52397 4.54608 4.70305 4.78851 4.99791 5.10458 5.34038 5.34617 5.37781 5.44989 5.58732 5.61549 5.68679 5.70135 5.81076 5.83178 5.86533 5.90089 5.95511 5.99050 6.07396 6.17016 6.18304 6.31578 6.51940 6.57964 6.92040 6.98721 7.11872 7.27199 7.27624 7.48901 7.60266 7.78716 8.15834 8.22832 8.37045 8.61387 8.75979 9.11335 9.96495 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.012609 B = 0.004700 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.115304 B = 5956.395011 C = 7396.941156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.377 6.377 3 C 0.502 3.498 4 O -0.513 6.513 5 C -0.278 4.278 6 C 0.019 3.981 7 C -0.315 4.315 8 C 0.274 3.726 9 N -0.747 5.747 10 C 0.158 3.842 11 H 0.085 0.915 12 C -0.170 4.170 13 C 0.062 3.938 14 O -0.385 6.385 15 C 0.065 3.935 16 C -0.133 4.133 17 H 0.087 0.913 18 C -0.145 4.145 19 C -0.319 4.319 20 C 0.157 3.843 21 C -0.393 4.393 22 H 0.116 0.884 23 C 0.079 3.921 24 N -0.788 5.788 25 Si 0.923 3.077 26 H -0.270 1.270 27 H -0.293 1.293 28 H -0.245 1.245 29 H 0.053 0.947 30 H 0.086 0.914 31 H 0.053 0.947 32 H 0.107 0.893 33 H 0.100 0.900 34 H 0.390 0.610 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.055 0.945 38 H 0.090 0.910 39 H 0.049 0.951 40 H 0.092 0.908 41 H 0.060 0.940 42 H 0.054 0.946 43 H 0.060 0.940 44 H 0.108 0.892 45 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.631 -9.771 1.305 14.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.296 6.296 3 C 0.353 3.647 4 O -0.404 6.404 5 C -0.282 4.282 6 C 0.000 4.000 7 C -0.337 4.337 8 C 0.172 3.828 9 N -0.378 5.378 10 C 0.051 3.949 11 H 0.103 0.897 12 C -0.210 4.210 13 C -0.015 4.015 14 O -0.304 6.304 15 C -0.012 4.012 16 C -0.152 4.152 17 H 0.105 0.895 18 C -0.202 4.202 19 C -0.343 4.343 20 C 0.151 3.849 21 C -0.419 4.419 22 H 0.133 0.867 23 C -0.142 4.142 24 N -0.411 5.411 25 Si 0.750 3.250 26 H -0.196 1.196 27 H -0.221 1.221 28 H -0.168 1.168 29 H 0.072 0.928 30 H 0.105 0.895 31 H 0.072 0.928 32 H 0.125 0.875 33 H 0.118 0.882 34 H 0.224 0.776 35 H 0.090 0.910 36 H 0.102 0.898 37 H 0.074 0.926 38 H 0.108 0.892 39 H 0.067 0.933 40 H 0.110 0.890 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.125 0.875 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 10.541 -9.423 1.243 14.193 hybrid contribution 0.198 0.567 0.568 0.827 sum 10.739 -8.857 1.811 14.037 Atomic orbital electron populations 1.22959 0.78666 1.01922 1.01807 1.86578 1.21488 1.35195 1.86302 1.21232 0.89537 0.80271 0.73693 1.90799 1.66778 1.35122 1.47676 1.19537 0.86859 0.94496 1.27282 1.20709 0.92954 0.96133 0.90230 1.19804 0.93927 0.94812 1.25172 1.17570 0.81646 0.94039 0.89505 1.44691 1.03386 1.07233 1.82491 1.20824 0.90826 0.87700 0.95523 0.89726 1.22703 1.01691 0.99160 0.97410 1.22572 0.84420 0.98745 0.95713 1.87897 1.29449 1.80196 1.32836 1.22612 1.00706 0.94439 0.83453 1.22036 0.96418 1.00686 0.96083 0.89453 1.21723 1.01503 1.01276 0.95705 1.20453 0.93681 0.95392 1.24780 1.18151 0.90129 0.91068 0.85503 1.20021 1.07144 0.89625 1.25157 0.86661 1.26402 0.96963 0.94352 0.96495 1.69574 1.37203 0.99407 1.34898 0.86187 0.80038 0.78830 0.79942 1.19600 1.22082 1.16783 0.92783 0.89507 0.92810 0.87466 0.88196 0.77567 0.90983 0.89770 0.92648 0.89208 0.93278 0.88982 0.92053 0.92645 0.92071 0.87452 0.90074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.65 10.57 101.05 1.07 1.72 16 2 O -0.38 -7.61 9.84 -40.89 -0.40 -8.01 16 3 C 0.50 12.06 7.85 34.29 0.27 12.33 16 4 O -0.51 -13.78 13.60 -19.31 -0.26 -14.05 16 5 C -0.28 -6.66 6.07 -102.50 -0.62 -7.29 16 6 C 0.02 0.39 9.60 -39.25 -0.38 0.01 16 7 C -0.32 -5.98 8.77 -39.30 -0.34 -6.32 16 8 C 0.27 5.34 6.61 -84.03 -0.56 4.78 16 9 N -0.75 -11.53 3.82 -52.12 -0.20 -11.72 16 10 C 0.16 1.98 1.96 -67.74 -0.13 1.84 16 11 H 0.08 1.11 6.43 -51.93 -0.33 0.77 16 12 C -0.17 -2.02 5.72 -26.49 -0.15 -2.17 16 13 C 0.06 0.74 6.68 37.31 0.25 0.99 16 14 O -0.39 -4.82 10.77 -35.23 -0.38 -5.20 16 15 C 0.06 0.70 5.95 37.21 0.22 0.92 16 16 C -0.13 -1.40 2.71 -90.48 -0.25 -1.65 16 17 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 18 C -0.14 -1.50 9.01 37.15 0.33 -1.17 16 19 C -0.32 -7.23 7.03 -38.66 -0.27 -7.50 16 20 C 0.16 3.98 5.21 -104.67 -0.55 3.43 16 21 C -0.39 -10.87 8.32 -37.80 -0.31 -11.18 16 22 H 0.12 3.53 6.29 -52.49 -0.33 3.20 16 23 C 0.08 2.08 5.47 -17.30 -0.09 1.99 16 24 N -0.79 -20.99 13.92 55.56 0.77 -20.22 16 25 Si 0.92 20.61 24.55 -169.99 -4.17 16.44 16 26 H -0.27 -5.63 6.42 56.52 0.36 -5.26 16 27 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 28 H -0.24 -5.65 7.01 56.52 0.40 -5.25 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.11 1.97 7.63 -52.49 -0.40 1.57 16 33 H 0.10 1.64 5.99 -52.49 -0.31 1.33 16 34 H 0.39 5.84 6.66 -40.82 -0.27 5.57 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.08 1.10 7.72 -51.93 -0.40 0.70 16 37 H 0.06 0.73 7.75 -51.93 -0.40 0.33 16 38 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.05 0.55 6.72 -51.93 -0.35 0.20 16 40 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.06 0.72 7.26 -51.93 -0.38 0.35 16 44 H 0.11 2.42 4.66 -52.49 -0.24 2.18 16 45 H 0.29 6.89 8.29 -40.82 -0.34 6.55 16 LS Contribution 353.22 15.07 5.32 5.32 Total: -1.00 -29.73 353.22 -7.24 -36.97 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -6.41 Total: 9.73 kcal Atomic # 6 Polarization: -7.74 SS G_CDS: -1.51 Total: -9.25 kcal Atomic # 7 Polarization: -32.52 SS G_CDS: 0.57 Total: -31.94 kcal Atomic # 8 Polarization: -26.22 SS G_CDS: -1.04 Total: -27.26 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -4.17 Total: 16.44 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.73 -7.24 -36.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170826640.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.308 kcal (2) G-P(sol) polarization free energy of solvation -29.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds