Wall clock time and date at job start Sat Apr 11 2020 00:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08994 * 109.47276 * 2 1 4 4 C 1.53005 * 109.46966 * 120.00286 * 2 1 3 5 5 C 1.50701 * 109.46753 * 294.99549 * 4 2 1 6 6 C 1.38250 * 119.93321 * 269.97761 * 5 4 2 7 7 C 1.38231 * 120.14882 * 179.79658 * 6 5 4 8 8 C 1.38552 * 120.02572 * 0.47231 * 7 6 5 9 9 C 1.39265 * 119.82706 * 359.53273 * 8 7 6 10 10 C 1.38232 * 119.92664 * 90.00630 * 5 4 2 11 11 O 1.36496 * 108.64230 * 180.24572 * 9 8 7 12 12 C 1.43981 * 105.48444 * 342.72036 * 11 9 8 13 13 O 1.36505 * 131.53353 * 179.83620 * 8 7 6 14 14 C 1.50703 * 109.46947 * 239.99830 * 2 1 3 15 15 O 1.21287 * 120.00038 * 240.00131 * 14 2 1 16 16 N 1.34773 * 119.99839 * 60.00443 * 14 2 1 17 17 C 1.46500 * 119.99648 * 179.97438 * 16 14 2 18 18 C 1.53006 * 109.46757 * 179.97438 * 17 16 14 19 19 C 1.53003 * 109.46867 * 179.97438 * 18 17 16 20 20 C 1.50700 * 109.46785 * 179.97438 * 19 18 17 21 21 H 1.07997 * 120.00451 * 0.02562 * 20 19 18 22 22 C 1.37877 * 119.99635 * 180.02562 * 20 19 18 23 23 N 1.31520 * 119.99949 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 120.00242 * 359.97438 * 22 20 19 25 25 H 1.48499 * 109.46802 * 90.00284 * 24 22 20 26 26 H 1.48501 * 109.47322 * 210.00281 * 24 22 20 27 27 H 1.48494 * 109.47027 * 330.00372 * 24 22 20 28 28 H 1.08999 * 109.47470 * 59.99866 * 1 2 3 29 29 H 1.09002 * 109.47559 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.47156 * 299.99834 * 1 2 3 31 31 H 1.08999 * 109.46883 * 175.00395 * 4 2 1 32 32 H 1.08992 * 109.47177 * 54.99881 * 4 2 1 33 33 H 1.08001 * 119.92506 * 0.05045 * 6 5 4 34 34 H 1.07997 * 119.99380 * 180.33371 * 7 6 5 35 35 H 1.08003 * 119.98952 * 359.97438 * 10 5 4 36 36 H 1.09007 * 110.56955 * 268.54960 * 12 11 9 37 37 H 1.09003 * 110.57719 * 145.67764 * 12 11 9 38 38 H 0.97000 * 120.00256 * 359.97438 * 16 14 2 39 39 H 1.08997 * 109.47099 * 299.99297 * 17 16 14 40 40 H 1.09002 * 109.47090 * 60.00231 * 17 16 14 41 41 H 1.08994 * 109.47599 * 300.00187 * 18 17 16 42 42 H 1.09002 * 109.46833 * 60.00440 * 18 17 16 43 43 H 1.08994 * 109.47391 * 300.00593 * 19 18 17 44 44 H 1.09002 * 109.46807 * 60.00703 * 19 18 17 45 45 H 0.96995 * 120.00351 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6412 0.0570 2.4766 6 6 2.4828 1.0324 2.9784 7 6 2.1197 1.7520 4.1014 8 6 0.9146 1.4901 4.7329 9 6 0.0669 0.5075 4.2276 10 6 0.4352 -0.2062 3.0986 11 8 -1.0466 0.4448 5.0146 12 6 -0.6894 1.1118 6.2396 13 8 0.3323 2.0430 5.8368 14 6 2.0322 -0.7105 -1.2305 15 8 2.7295 -1.6966 -1.1192 16 7 1.7067 -0.2500 -2.4545 17 6 2.1954 -0.9403 -3.6507 18 6 1.6848 -0.2194 -4.8999 19 6 2.1958 -0.9400 -6.1492 20 6 1.6924 -0.2303 -7.3796 21 1 1.0706 0.6471 -7.2806 22 6 2.0257 -0.7013 -8.6319 23 7 1.5867 -0.0817 -9.7057 24 14 3.1017 -2.2186 -8.8033 25 1 2.2449 -3.4306 -8.8481 26 1 3.8931 -2.1252 -10.0564 27 1 4.0227 -2.3060 -7.6417 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8901 31 1 3.1262 -0.7995 1.2056 32 1 1.6053 -1.7198 1.2951 33 1 3.4241 1.2355 2.4895 34 1 2.7765 2.5170 4.4881 35 1 -0.2203 -0.9688 2.7045 36 1 -0.2939 0.3984 6.9628 37 1 -1.5484 1.6407 6.6524 38 1 1.1487 0.5385 -2.5436 39 1 3.2854 -0.9399 -3.6505 40 1 1.8324 -1.9681 -3.6508 41 1 0.5949 -0.2201 -4.8999 42 1 2.0476 0.8085 -4.9000 43 1 3.2858 -0.9390 -6.1490 44 1 1.8334 -1.9681 -6.1494 45 1 1.8215 -0.4128 -10.5867 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182410660.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:03:08 Heat of formation + Delta-G solvation = -119.293082 kcal Electronic energy + Delta-G solvation = -25409.559136 eV Core-core repulsion = 21584.321907 eV Total energy + Delta-G solvation = -3825.237229 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.12463 -41.02314 -39.29746 -37.28309 -37.01516 -35.57767 -35.11336 -33.26595 -31.56886 -31.24939 -28.92887 -27.85166 -26.47544 -25.36207 -24.03549 -23.80364 -22.45354 -22.19195 -20.63730 -18.96634 -18.90206 -18.51158 -18.29406 -17.96905 -17.02202 -16.97470 -16.73210 -16.20753 -15.95707 -15.45695 -15.30272 -14.98803 -14.85507 -14.79373 -14.58836 -14.42939 -14.00242 -13.91915 -13.79873 -13.59509 -13.33463 -13.10855 -12.83075 -12.71792 -12.67961 -12.36943 -12.05371 -11.90457 -11.86589 -11.76640 -11.58318 -11.55778 -11.32142 -10.75691 -10.70069 -10.03370 -9.81467 -9.01071 -8.28850 -6.32722 0.10572 0.22997 1.37305 1.38967 1.50689 1.68797 1.80238 2.23599 2.36789 2.53049 2.60204 3.06898 3.49215 3.62415 3.80531 3.89545 3.93382 4.04158 4.11024 4.18021 4.21294 4.23530 4.27067 4.31645 4.48223 4.53037 4.53968 4.78789 4.87809 4.90998 4.92004 4.95910 5.05125 5.07736 5.10135 5.21378 5.26322 5.30371 5.42872 5.46213 5.53968 5.57159 5.59046 5.66043 6.13739 6.28071 6.61997 6.75653 7.29923 7.32206 8.87482 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.036862 B = 0.001796 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.401872 B =15582.587841 C =15777.730229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 H 0.121 0.879 4 C -0.053 4.053 5 C -0.065 4.065 6 C -0.101 4.101 7 C -0.100 4.100 8 C 0.008 3.992 9 C 0.014 3.986 10 C -0.099 4.099 11 O -0.328 6.328 12 C 0.205 3.795 13 O -0.327 6.327 14 C 0.512 3.488 15 O -0.585 6.585 16 N -0.718 5.718 17 C 0.126 3.874 18 C -0.101 4.101 19 C -0.013 4.013 20 C -0.531 4.531 21 H 0.037 0.963 22 C 0.004 3.996 23 N -0.950 5.950 24 Si 0.947 3.053 25 H -0.268 1.268 26 H -0.285 1.285 27 H -0.247 1.247 28 H 0.071 0.929 29 H 0.056 0.944 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.161 0.839 34 H 0.153 0.847 35 H 0.141 0.859 36 H 0.101 0.899 37 H 0.158 0.842 38 H 0.414 0.586 39 H 0.057 0.943 40 H 0.056 0.944 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.021 0.979 44 H 0.019 0.981 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.873 2.990 35.001 35.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.116 4.116 3 H 0.139 0.861 4 C -0.091 4.091 5 C -0.065 4.065 6 C -0.118 4.118 7 C -0.118 4.118 8 C -0.037 4.037 9 C -0.030 4.030 10 C -0.118 4.118 11 O -0.245 6.245 12 C 0.094 3.906 13 O -0.244 6.244 14 C 0.300 3.700 15 O -0.466 6.466 16 N -0.369 5.369 17 C 0.002 3.998 18 C -0.139 4.139 19 C -0.051 4.051 20 C -0.569 4.569 21 H 0.056 0.944 22 C -0.193 4.193 23 N -0.591 5.591 24 Si 0.771 3.229 25 H -0.193 1.193 26 H -0.210 1.210 27 H -0.171 1.171 28 H 0.090 0.910 29 H 0.076 0.924 30 H 0.096 0.904 31 H 0.102 0.898 32 H 0.093 0.907 33 H 0.178 0.822 34 H 0.170 0.830 35 H 0.159 0.841 36 H 0.119 0.881 37 H 0.176 0.824 38 H 0.250 0.750 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.039 0.961 44 H 0.037 0.963 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.571 2.402 34.982 35.100 hybrid contribution -0.228 -0.161 -0.579 0.643 sum -1.799 2.241 34.403 34.523 Atomic orbital electron populations 1.21886 0.91812 1.02903 1.03814 1.21274 0.98436 1.01418 0.90472 0.86068 1.20297 1.02253 0.97774 0.88768 1.19558 0.93279 0.97148 0.96560 1.21143 1.00871 0.94863 0.94967 1.20360 0.92730 1.02249 0.96471 1.20131 0.96353 0.95748 0.91426 1.19986 0.86644 0.99306 0.97100 1.20124 0.97468 1.00311 0.93876 1.87331 1.32738 1.76310 1.28091 1.26067 0.90979 0.87418 0.86122 1.87325 1.49525 1.44776 1.42726 1.21207 0.79238 0.84096 0.85437 1.90684 1.40065 1.28364 1.87467 1.46038 1.53327 1.32331 1.05226 1.21278 0.98682 0.96066 0.83752 1.21483 1.00738 0.99424 0.92225 1.19475 0.96547 0.96028 0.93033 1.21477 1.31376 1.12803 0.91224 0.94429 1.25993 0.97323 1.00443 0.95529 1.70059 1.47683 1.42726 0.98618 0.85697 0.79570 0.79398 0.78240 1.19297 1.21049 1.17090 0.90987 0.92447 0.90383 0.89771 0.90676 0.82183 0.82975 0.84125 0.88121 0.82445 0.74959 0.92469 0.92573 0.91783 0.91718 0.96085 0.96278 0.92537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 8.65 71.98 0.62 -1.37 16 2 C -0.09 -1.48 2.71 -11.54 -0.03 -1.51 16 3 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 4 C -0.05 -0.83 4.18 29.85 0.12 -0.71 16 5 C -0.07 -0.92 4.71 -19.86 -0.09 -1.02 16 6 C -0.10 -1.23 9.69 22.27 0.22 -1.02 16 7 C -0.10 -1.37 10.06 22.34 0.22 -1.15 16 8 C 0.01 0.13 7.15 22.59 0.16 0.29 16 9 C 0.01 0.25 7.15 22.59 0.16 0.41 16 10 C -0.10 -1.58 7.97 22.34 0.18 -1.40 16 11 O -0.33 -5.86 11.40 -76.01 -0.87 -6.72 16 12 C 0.20 2.32 8.89 113.37 1.01 3.32 16 13 O -0.33 -5.59 11.40 -76.10 -0.87 -6.46 16 14 C 0.51 12.37 7.15 87.66 0.63 13.00 16 15 O -0.59 -19.08 15.92 -3.05 -0.05 -19.13 16 16 N -0.72 -17.05 5.45 -463.04 -2.52 -19.57 16 17 C 0.13 3.85 5.67 86.38 0.49 4.34 16 18 C -0.10 -3.55 5.27 30.60 0.16 -3.39 16 19 C -0.01 -0.58 4.04 29.85 0.12 -0.46 16 20 C -0.53 -29.96 9.66 25.60 0.25 -29.71 16 21 H 0.04 2.30 7.99 -2.91 -0.02 2.28 16 22 C 0.00 0.23 5.47 84.65 0.46 0.69 16 23 N -0.95 -59.18 13.96 21.45 0.30 -58.88 16 24 Si 0.95 44.18 27.47 68.60 1.88 46.06 16 25 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 26 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 27 H -0.25 -10.76 6.54 99.48 0.65 -10.11 16 28 H 0.07 0.87 7.56 -2.39 -0.02 0.85 16 29 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.08 0.98 6.27 -2.38 -0.01 0.96 16 31 H 0.08 1.40 7.90 -2.39 -0.02 1.39 16 32 H 0.07 1.31 8.08 -2.39 -0.02 1.29 16 33 H 0.16 1.25 8.06 -2.91 -0.02 1.23 16 34 H 0.15 1.48 8.06 -2.91 -0.02 1.45 16 35 H 0.14 2.00 8.04 -2.91 -0.02 1.98 16 36 H 0.10 0.72 8.14 -2.38 -0.02 0.70 16 37 H 0.16 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.41 7.55 7.89 -92.71 -0.73 6.82 16 39 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 42 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 43 H 0.02 0.94 7.20 -2.39 -0.02 0.92 16 44 H 0.02 0.84 7.57 -2.39 -0.02 0.82 16 45 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -74.57 372.85 2.77 -71.80 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: 0.21 Total: 12.58 kcal Atomic # 6 Polarization: -24.36 SS G_CDS: 4.68 Total: -19.68 kcal Atomic # 7 Polarization: -76.23 SS G_CDS: -2.22 Total: -78.45 kcal Atomic # 8 Polarization: -30.53 SS G_CDS: -1.78 Total: -32.31 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 1.88 Total: 46.06 kcal Total: -74.57 2.77 -71.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182410660.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.493 kcal (2) G-P(sol) polarization free energy of solvation -74.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds