Wall clock time and date at job start Sat Apr 11 2020 00:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34712 * 117.00126 * 2 1 4 4 O 1.21468 * 120.00044 * 359.97438 * 3 2 1 5 5 C 1.47724 * 119.99782 * 180.02562 * 3 2 1 6 6 C 1.39635 * 120.14486 * 179.97438 * 5 3 2 7 7 C 1.37946 * 119.84343 * 179.97438 * 6 5 3 8 8 C 1.38365 * 120.15413 * 359.97438 * 7 6 5 9 9 C 1.50701 * 119.85298 * 180.02562 * 8 7 6 10 10 H 1.09000 * 109.46421 * 24.99719 * 9 8 7 11 11 C 1.53000 * 109.47214 * 265.00520 * 9 8 7 12 12 O 1.42894 * 109.47408 * 145.00309 * 9 8 7 13 13 C 1.42903 * 114.00157 * 210.00347 * 12 9 8 14 14 H 1.09004 * 110.88363 * 32.42158 * 13 12 9 15 15 C 1.55152 * 111.03604 * 156.33106 * 13 12 9 16 16 C 1.54338 * 103.01921 * 153.39682 * 15 13 12 17 17 N 1.47024 * 107.26406 * 338.13863 * 16 15 13 18 18 C 1.36936 * 125.64802 * 178.85276 * 17 16 15 19 19 H 1.07997 * 120.00015 * 205.70062 * 18 17 16 20 20 C 1.38810 * 119.99782 * 25.69915 * 18 17 16 21 21 N 1.31628 * 119.99789 * 214.47366 * 20 18 17 22 22 Si 1.86792 * 120.00337 * 34.48312 * 20 18 17 23 23 H 1.48500 * 109.47151 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47142 * 239.99823 * 22 20 18 25 25 H 1.48508 * 109.47417 * 119.99705 * 22 20 18 26 26 C 1.47422 * 108.70309 * 358.58348 * 17 16 15 27 27 C 1.38367 * 120.30003 * 0.27966 * 8 7 6 28 28 C 1.37943 * 120.15362 * 359.44893 * 27 8 7 29 29 H 1.08999 * 109.47145 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47332 * 300.00724 * 1 2 3 31 31 H 1.09000 * 109.47205 * 60.00500 * 1 2 3 32 32 H 1.07997 * 120.07856 * 359.97438 * 6 5 3 33 33 H 1.07998 * 119.92173 * 180.02562 * 7 6 5 34 34 H 1.09001 * 109.46989 * 299.99920 * 11 9 8 35 35 H 1.09005 * 109.47273 * 59.99226 * 11 9 8 36 36 H 1.09001 * 109.47315 * 179.97438 * 11 9 8 37 37 H 1.09008 * 110.71893 * 271.94637 * 15 13 12 38 38 H 1.08995 * 110.72340 * 35.05221 * 15 13 12 39 39 H 1.08994 * 109.99330 * 218.66392 * 16 15 13 40 40 H 1.08998 * 109.78030 * 97.49215 * 16 15 13 41 41 H 0.97000 * 119.99944 * 5.09675 * 21 20 18 42 42 H 1.09001 * 110.36712 * 143.19278 * 26 17 16 43 43 H 1.09000 * 110.37113 * 265.40981 * 26 17 16 44 44 H 1.08008 * 119.92642 * 179.72306 * 27 8 7 45 45 H 1.07994 * 120.08147 * 180.27722 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4020 2.2190 -0.0005 5 6 3.5388 1.2775 -0.0006 6 6 4.1759 2.5200 -0.0011 7 6 5.5539 2.5849 -0.0011 8 6 6.3044 1.4225 0.0000 9 6 7.8093 1.5013 0.0005 10 1 8.1232 2.4507 0.4343 11 6 8.3258 1.4016 -1.4362 12 8 8.3424 0.4246 0.7741 13 6 9.5878 0.7247 1.4074 14 1 9.6415 1.7790 1.6790 15 6 9.8153 -0.1812 2.6462 16 6 11.3536 -0.2349 2.7599 17 7 11.9008 0.0991 1.4368 18 6 13.2307 0.1830 1.1212 19 1 13.5528 0.8080 0.3015 20 6 14.1647 -0.5355 1.8549 21 7 15.3611 -0.0310 2.0710 22 14 13.7240 -2.2184 2.5351 23 1 12.3284 -2.5557 2.1559 24 1 13.8438 -2.2009 4.0152 25 1 14.6493 -3.2364 1.9756 26 6 10.7808 0.3226 0.5047 27 6 5.6794 0.1880 -0.0048 28 6 4.3023 0.1085 0.0008 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 3.5913 3.4281 -0.0015 33 1 6.0480 3.5452 -0.0011 34 1 8.0119 0.4522 -1.8701 35 1 7.9191 2.2228 -2.0264 36 1 9.4143 1.4590 -1.4358 37 1 9.3759 0.2668 3.5375 38 1 9.4072 -1.1774 2.4757 39 1 11.6711 -1.2363 3.0503 40 1 11.6946 0.4925 3.4965 41 1 15.5660 0.8721 1.7821 42 1 11.0198 1.1284 -0.1893 43 1 10.5535 -0.5928 -0.0417 44 1 6.2712 -0.7155 -0.0084 45 1 3.8158 -0.8557 0.0016 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223752969.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:03:31 Heat of formation + Delta-G solvation = -95.432228 kcal Electronic energy + Delta-G solvation = -26144.716427 eV Core-core repulsion = 22320.513882 eV Total energy + Delta-G solvation = -3824.202545 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.67743 -40.60785 -39.61638 -37.84020 -37.47597 -34.74839 -33.70298 -32.06622 -31.32940 -30.58463 -29.40736 -28.54946 -25.87975 -25.47442 -23.73936 -23.00132 -22.30860 -21.87683 -21.52112 -19.61530 -19.13700 -18.24713 -17.95339 -17.42878 -17.33588 -16.69044 -16.37560 -15.77395 -15.69269 -15.44367 -15.37428 -14.93348 -14.65307 -14.55364 -14.36138 -14.20488 -13.97454 -13.84654 -13.51034 -13.36307 -13.21174 -13.03050 -12.95175 -12.71505 -12.31411 -12.28525 -12.07272 -11.93183 -11.85590 -11.71819 -11.63437 -11.61149 -11.12262 -10.69398 -10.47176 -10.01233 -9.91997 -9.06778 -8.64919 -5.48662 -0.43057 0.36220 1.39969 1.45407 1.52899 1.65034 1.73148 2.44194 2.54386 2.73649 2.96143 3.49456 3.55600 3.70674 3.80538 3.89173 3.93961 3.96308 4.10465 4.16231 4.24455 4.28169 4.31875 4.37821 4.40683 4.45609 4.56511 4.68515 4.74010 4.75408 4.81662 4.91646 4.97031 5.00879 5.02852 5.07812 5.14582 5.24481 5.25482 5.27734 5.35272 5.49613 5.71713 5.80214 6.15771 6.29771 6.59988 6.80038 7.48073 8.19197 8.75281 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.030542 B = 0.002303 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.544085 B =12155.985653 C =12632.859670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.358 6.358 3 C 0.512 3.488 4 O -0.537 6.537 5 C -0.146 4.146 6 C -0.058 4.058 7 C -0.120 4.120 8 C -0.046 4.046 9 C 0.117 3.883 10 H 0.086 0.914 11 C -0.169 4.169 12 O -0.368 6.368 13 C 0.092 3.908 14 H 0.082 0.918 15 C -0.113 4.113 16 C 0.114 3.886 17 N -0.622 5.622 18 C -0.337 4.337 19 H 0.036 0.964 20 C -0.051 4.051 21 N -0.932 5.932 22 Si 1.081 2.919 23 H -0.259 1.259 24 H -0.282 1.282 25 H -0.296 1.296 26 C 0.108 3.892 27 C -0.113 4.113 28 C -0.058 4.058 29 H 0.134 0.866 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.143 0.857 33 H 0.156 0.844 34 H 0.062 0.938 35 H 0.084 0.916 36 H 0.055 0.945 37 H 0.102 0.898 38 H 0.082 0.918 39 H 0.027 0.973 40 H 0.030 0.970 41 H 0.255 0.745 42 H 0.038 0.962 43 H 0.024 0.976 44 H 0.138 0.862 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.767 1.706 -4.076 30.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.274 6.274 3 C 0.358 3.642 4 O -0.428 6.428 5 C -0.147 4.147 6 C -0.076 4.076 7 C -0.138 4.138 8 C -0.047 4.047 9 C 0.060 3.940 10 H 0.104 0.896 11 C -0.227 4.227 12 O -0.287 6.287 13 C 0.034 3.966 14 H 0.100 0.900 15 C -0.151 4.151 16 C -0.011 4.011 17 N -0.350 5.350 18 C -0.466 4.466 19 H 0.053 0.947 20 C -0.249 4.249 21 N -0.572 5.572 22 Si 0.906 3.094 23 H -0.184 1.184 24 H -0.209 1.209 25 H -0.224 1.224 26 C -0.017 4.017 27 C -0.131 4.131 28 C -0.076 4.076 29 H 0.152 0.848 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.161 0.839 33 H 0.173 0.827 34 H 0.082 0.918 35 H 0.102 0.898 36 H 0.074 0.926 37 H 0.121 0.879 38 H 0.101 0.899 39 H 0.045 0.955 40 H 0.048 0.952 41 H 0.064 0.936 42 H 0.057 0.943 43 H 0.042 0.958 44 H 0.156 0.844 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -29.426 0.535 -3.291 29.614 hybrid contribution 0.047 1.736 -1.140 2.078 sum -29.379 2.271 -4.431 29.798 Atomic orbital electron populations 1.23601 0.74188 1.05951 1.02690 1.86543 1.25339 1.31746 1.83751 1.21427 0.89495 0.81473 0.71762 1.90809 1.67468 1.36935 1.47617 1.19226 0.88620 0.95854 1.11041 1.21318 0.94666 0.96756 0.94854 1.21125 0.92823 0.98908 1.00909 1.20165 0.94379 0.94109 0.96019 1.21139 0.89298 0.90986 0.92609 0.89641 1.22327 1.01473 1.03481 0.95386 1.87889 1.35946 1.38833 1.66022 1.23153 0.82431 0.98838 0.92218 0.89967 1.22583 0.93514 1.01100 0.97869 1.21788 0.93332 0.98064 0.87885 1.44708 1.01089 1.83563 1.05681 1.19662 0.82241 1.25501 1.19161 0.94667 1.27160 0.92859 1.06083 0.98770 1.70971 1.25098 1.17446 1.43705 0.83663 0.75691 0.73927 0.76074 1.18397 1.20872 1.22406 1.22248 0.88378 0.97906 0.93152 1.21137 0.94085 0.98394 0.99456 1.21588 0.93553 0.98276 0.94160 0.84801 0.91821 0.91751 0.83920 0.82652 0.91841 0.89756 0.92609 0.87926 0.89938 0.95528 0.95222 0.93612 0.94334 0.95815 0.84375 0.83029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.56 113.37 1.20 1.50 16 2 O -0.36 -6.11 9.82 -56.21 -0.55 -6.66 16 3 C 0.51 10.66 7.90 70.33 0.56 11.22 16 4 O -0.54 -13.60 16.14 19.94 0.32 -13.28 16 5 C -0.15 -2.80 5.87 -20.10 -0.12 -2.92 16 6 C -0.06 -1.02 9.60 22.54 0.22 -0.80 16 7 C -0.12 -1.91 9.66 22.23 0.21 -1.70 16 8 C -0.05 -0.87 5.01 -19.80 -0.10 -0.96 16 9 C 0.12 2.41 2.92 29.85 0.09 2.50 16 10 H 0.09 1.57 7.34 -2.39 -0.02 1.56 16 11 C -0.17 -3.41 9.36 71.98 0.67 -2.73 16 12 O -0.37 -9.64 8.95 -148.98 -1.33 -10.97 16 13 C 0.09 2.80 3.48 31.99 0.11 2.91 16 14 H 0.08 2.32 7.50 -2.39 -0.02 2.31 16 15 C -0.11 -3.49 6.68 31.79 0.21 -3.28 16 16 C 0.11 4.74 6.03 86.73 0.52 5.27 16 17 N -0.62 -30.23 3.06 -691.97 -2.12 -32.35 16 18 C -0.34 -19.57 10.24 84.03 0.86 -18.71 16 19 H 0.04 2.22 8.06 -2.91 -0.02 2.20 16 20 C -0.05 -2.99 5.29 84.86 0.45 -2.55 16 21 N -0.93 -58.73 13.70 21.65 0.30 -58.43 16 22 Si 1.08 52.63 26.22 68.60 1.80 54.43 16 23 H -0.26 -11.66 6.16 99.48 0.61 -11.05 16 24 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 25 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 26 C 0.11 4.27 6.12 86.86 0.53 4.80 16 27 C -0.11 -2.11 9.33 22.23 0.21 -1.91 16 28 C -0.06 -1.00 9.62 22.54 0.22 -0.78 16 29 H 0.13 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.14 2.32 7.65 -2.91 -0.02 2.30 16 33 H 0.16 1.74 8.06 -2.91 -0.02 1.71 16 34 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 36 H 0.05 1.31 6.39 -2.39 -0.02 1.29 16 37 H 0.10 2.56 8.14 -2.38 -0.02 2.54 16 38 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 39 H 0.03 1.16 3.83 -2.39 -0.01 1.15 16 40 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.25 16.10 8.73 -92.71 -0.81 15.29 16 42 H 0.04 1.52 7.16 -2.39 -0.02 1.50 16 43 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.14 2.62 7.62 -2.91 -0.02 2.60 16 45 H 0.15 2.12 7.61 -2.91 -0.02 2.09 16 Total: -1.00 -71.98 369.18 5.11 -66.87 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: 0.85 Total: 8.54 kcal Atomic # 6 Polarization: -13.98 SS G_CDS: 5.84 Total: -8.14 kcal Atomic # 7 Polarization: -88.96 SS G_CDS: -1.82 Total: -90.79 kcal Atomic # 8 Polarization: -29.35 SS G_CDS: -1.56 Total: -30.92 kcal Atomic # 14 Polarization: 52.63 SS G_CDS: 1.80 Total: 54.43 kcal Total: -71.98 5.11 -66.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223752969.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.558 kcal (2) G-P(sol) polarization free energy of solvation -71.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds