Wall clock time and date at job start Sat Apr 11 2020 00:03:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34716 * 116.99455 * 2 1 4 4 O 1.21470 * 120.00250 * 359.97438 * 3 2 1 5 5 C 1.47725 * 119.99480 * 180.02562 * 3 2 1 6 6 C 1.39649 * 120.15417 * 359.97438 * 5 3 2 7 7 C 1.37926 * 119.85085 * 180.02562 * 6 5 3 8 8 C 1.38389 * 120.14558 * 359.72895 * 7 6 5 9 9 C 1.38341 * 120.30662 * 0.54455 * 8 7 6 10 10 C 1.50701 * 119.92535 * 179.72452 * 9 8 7 11 11 H 1.09001 * 109.46947 * 159.72631 * 10 9 8 12 12 C 1.52997 * 109.47092 * 279.72958 * 10 9 8 13 13 O 1.42895 * 109.46951 * 39.73404 * 10 9 8 14 14 C 1.42906 * 114.00315 * 150.00151 * 13 10 9 15 15 H 1.09000 * 110.88001 * 333.87341 * 14 13 10 16 16 C 1.55161 * 111.00283 * 209.99687 * 14 13 10 17 17 C 1.54323 * 102.93603 * 206.38144 * 16 14 13 18 18 N 1.47018 * 107.27391 * 22.19349 * 17 16 14 19 19 C 1.36939 * 125.64487 * 181.02127 * 18 17 16 20 20 H 1.08000 * 119.99581 * 189.83269 * 19 18 17 21 21 C 1.38805 * 120.00356 * 9.82904 * 19 18 17 22 22 N 1.31621 * 120.00209 * 208.93508 * 21 19 18 23 23 Si 1.86800 * 120.00028 * 28.93562 * 21 19 18 24 24 H 1.48503 * 109.47084 * 275.30206 * 23 21 19 25 25 H 1.48493 * 109.47453 * 155.29993 * 23 21 19 26 26 H 1.48503 * 109.46914 * 35.29834 * 23 21 19 27 27 C 1.47418 * 108.70509 * 1.28535 * 18 17 16 28 28 C 1.37972 * 120.14902 * 359.45423 * 9 8 7 29 29 H 1.09006 * 109.46721 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47211 * 299.99914 * 1 2 3 31 31 H 1.08993 * 109.47326 * 60.00072 * 1 2 3 32 32 H 1.08004 * 120.07285 * 0.04115 * 6 5 3 33 33 H 1.07997 * 119.92471 * 179.97438 * 7 6 5 34 34 H 1.08003 * 119.84408 * 180.27494 * 8 7 6 35 35 H 1.09008 * 109.46943 * 179.97438 * 12 10 9 36 36 H 1.08995 * 109.47006 * 299.99654 * 12 10 9 37 37 H 1.08999 * 109.47303 * 60.00513 * 12 10 9 38 38 H 1.09002 * 110.71740 * 88.02056 * 16 14 13 39 39 H 1.08996 * 110.71703 * 324.74653 * 16 14 13 40 40 H 1.09002 * 109.88212 * 262.76856 * 17 16 14 41 41 H 1.09000 * 109.87848 * 141.61041 * 17 16 14 42 42 H 0.96996 * 119.99849 * 4.81527 * 22 21 19 43 43 H 1.09002 * 110.36921 * 94.48294 * 27 18 17 44 44 H 1.09000 * 110.37005 * 216.80481 * 27 18 17 45 45 H 1.07999 * 120.07161 * 180.29124 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2004 0.0000 4 8 1.4019 2.2191 -0.0005 5 6 3.5387 1.2777 -0.0006 6 6 4.3025 0.1086 -0.0006 7 6 5.6794 0.1880 -0.0006 8 6 6.3043 1.4228 -0.0062 9 6 5.5539 2.5850 -0.0006 10 6 6.2433 3.9251 -0.0005 11 1 5.5508 4.6899 -0.3521 12 6 6.6993 4.2639 1.4200 13 8 7.3789 3.8765 -0.8666 14 6 7.6987 5.1286 -1.4766 15 1 6.8136 5.7598 -1.5552 16 6 8.3570 4.9183 -2.8658 17 6 9.2102 6.1924 -3.0403 18 7 9.4613 6.7368 -1.6979 19 6 10.1661 7.8771 -1.4182 20 1 10.4321 8.1108 -0.3979 21 6 10.5387 8.7324 -2.4459 22 7 11.6264 9.4646 -2.3311 23 14 9.4965 8.8444 -3.9921 24 1 9.8881 7.7638 -4.9324 25 1 9.7097 10.1642 -4.6383 26 1 8.0630 8.6941 -3.6346 27 6 8.8341 5.8485 -0.7025 28 6 4.1757 2.5200 -0.0006 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 3.8159 -0.8557 -0.0008 33 1 6.2712 -0.7153 -0.0002 34 1 7.3828 1.4794 -0.0107 35 1 7.1984 5.2330 1.4200 36 1 5.8331 4.3010 2.0805 37 1 7.3919 3.4991 1.7715 38 1 7.5986 4.8522 -3.6459 39 1 8.9875 4.0292 -2.8631 40 1 8.6676 6.9224 -3.6410 41 1 10.1556 5.9423 -3.5217 42 1 12.2051 9.3559 -1.5602 43 1 9.5592 5.1256 -0.3289 44 1 8.4208 6.4323 0.1200 45 1 3.5911 3.4281 -0.0009 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223790711.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:03:51 Heat of formation + Delta-G solvation = -72.515259 kcal Electronic energy + Delta-G solvation = -26309.929616 eV Core-core repulsion = 22486.720825 eV Total energy + Delta-G solvation = -3823.208791 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.91425 -39.64375 -38.45358 -36.77993 -36.42459 -33.17074 -32.14916 -31.62986 -29.79406 -29.17164 -28.11858 -27.84838 -24.54795 -24.07391 -23.47773 -21.91136 -20.88432 -20.70602 -20.22843 -18.12570 -17.51439 -17.45512 -16.70814 -16.64066 -16.26149 -15.73040 -15.25629 -14.99449 -14.45941 -14.33539 -13.91803 -13.88776 -13.71743 -13.54602 -13.27282 -12.81390 -12.68357 -12.56972 -12.44320 -12.33624 -12.01849 -11.83299 -11.80184 -11.27309 -11.19643 -11.14602 -11.03171 -10.84838 -10.79768 -10.52179 -10.13231 -9.61109 -9.40435 -9.33347 -9.17973 -9.06272 -8.44472 -7.08084 -6.37020 -3.17910 0.40095 0.99565 2.22738 2.28997 3.40806 3.44568 3.53160 3.66138 3.72439 4.32003 4.46597 4.56647 4.63462 4.70599 4.79036 4.82135 4.96496 4.99961 5.03856 5.07554 5.12633 5.17139 5.23095 5.38759 5.43973 5.44888 5.49481 5.56165 5.60635 5.79895 5.81724 5.89308 5.94058 6.07053 6.09495 6.15401 6.24417 6.25112 6.46608 6.52542 6.53211 6.58371 6.79419 7.37412 7.42203 7.71602 8.33762 9.01718 9.58046 10.24575 11.12250 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.024993 B = 0.002469 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.067149 B =11338.017810 C =11703.857709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.356 6.356 3 C 0.510 3.490 4 O -0.506 6.506 5 C -0.133 4.133 6 C -0.063 4.063 7 C -0.135 4.135 8 C -0.052 4.052 9 C -0.091 4.091 10 C 0.126 3.874 11 H 0.072 0.928 12 C -0.171 4.171 13 O -0.367 6.367 14 C 0.070 3.930 15 H 0.072 0.928 16 C -0.125 4.125 17 C 0.120 3.880 18 N -0.608 5.608 19 C -0.332 4.332 20 H 0.078 0.922 21 C -0.013 4.013 22 N -0.911 5.911 23 Si 1.054 2.946 24 H -0.293 1.293 25 H -0.299 1.299 26 H -0.294 1.294 27 C 0.121 3.879 28 C -0.046 4.046 29 H 0.103 0.897 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.137 0.863 33 H 0.133 0.867 34 H 0.138 0.862 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.028 0.972 41 H 0.043 0.957 42 H 0.264 0.736 43 H 0.035 0.965 44 H 0.043 0.957 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.963 -22.348 5.798 29.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.273 6.273 3 C 0.356 3.644 4 O -0.395 6.395 5 C -0.134 4.134 6 C -0.081 4.081 7 C -0.153 4.153 8 C -0.070 4.070 9 C -0.091 4.091 10 C 0.068 3.932 11 H 0.089 0.911 12 C -0.229 4.229 13 O -0.285 6.285 14 C 0.012 3.988 15 H 0.090 0.910 16 C -0.163 4.163 17 C -0.005 4.005 18 N -0.337 5.337 19 C -0.459 4.459 20 H 0.096 0.904 21 C -0.215 4.215 22 N -0.551 5.551 23 Si 0.887 3.113 24 H -0.221 1.221 25 H -0.227 1.227 26 H -0.222 1.222 27 C -0.005 4.005 28 C -0.064 4.064 29 H 0.121 0.879 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.154 0.846 33 H 0.151 0.849 34 H 0.155 0.845 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.096 0.904 40 H 0.045 0.955 41 H 0.061 0.939 42 H 0.074 0.926 43 H 0.052 0.948 44 H 0.062 0.938 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -19.187 -21.336 4.369 29.025 hybrid contribution -0.311 -0.527 1.483 1.605 sum -19.498 -21.863 5.852 29.873 Atomic orbital electron populations 1.23298 0.75843 1.03821 1.02760 1.86537 1.23663 1.32661 1.84398 1.21240 0.89164 0.81430 0.72610 1.90846 1.66803 1.36020 1.45790 1.18954 0.88753 0.94939 1.10723 1.21454 0.94023 0.97717 0.94942 1.21209 0.94227 0.98215 1.01686 1.21391 1.01217 0.91342 0.93025 1.19768 0.92539 0.95504 1.01279 1.20892 0.87934 0.92931 0.91423 0.91052 1.22342 1.01964 1.03101 0.95448 1.87880 1.46841 1.32197 1.61583 1.23634 0.97607 0.84015 0.93564 0.91042 1.22666 0.99143 0.99153 0.95289 1.21626 0.97183 0.92367 0.89307 1.44705 1.63127 1.25984 0.99840 1.20006 1.30511 0.99443 0.95931 0.90447 1.25764 0.98665 0.95465 1.01568 1.70894 1.09707 1.44492 1.29986 0.83963 0.75899 0.75004 0.76460 1.22054 1.22650 1.22160 1.22069 0.92787 0.92975 0.92705 1.21069 0.93688 0.96942 0.94719 0.87891 0.91758 0.91724 0.84553 0.84907 0.84460 0.91138 0.91775 0.91577 0.91173 0.90368 0.95471 0.93894 0.92576 0.94769 0.93832 0.84475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.22 10.56 101.05 1.07 1.29 16 2 O -0.36 -3.23 9.82 -40.53 -0.40 -3.63 16 3 C 0.51 5.69 7.90 34.61 0.27 5.96 16 4 O -0.51 -6.87 16.14 -19.24 -0.31 -7.18 16 5 C -0.13 -1.39 5.87 -104.98 -0.62 -2.01 16 6 C -0.06 -0.54 9.62 -39.17 -0.38 -0.92 16 7 C -0.14 -1.12 10.03 -39.64 -0.40 -1.52 16 8 C -0.05 -0.52 9.35 -39.49 -0.37 -0.89 16 9 C -0.09 -1.01 4.97 -104.68 -0.52 -1.53 16 10 C 0.13 1.54 2.92 -27.88 -0.08 1.46 16 11 H 0.07 0.84 7.24 -51.93 -0.38 0.47 16 12 C -0.17 -1.93 9.51 37.16 0.35 -1.58 16 13 O -0.37 -5.38 9.10 -35.23 -0.32 -5.71 16 14 C 0.07 1.19 3.52 -24.46 -0.09 1.10 16 15 H 0.07 1.18 7.40 -51.93 -0.38 0.79 16 16 C -0.12 -2.16 6.68 -24.89 -0.17 -2.33 16 17 C 0.12 2.67 4.99 -3.07 -0.02 2.65 16 18 N -0.61 -15.14 3.28 -169.94 -0.56 -15.70 16 19 C -0.33 -9.59 10.41 -15.06 -0.16 -9.75 16 20 H 0.08 2.34 8.06 -52.49 -0.42 1.92 16 21 C -0.01 -0.40 5.41 -17.43 -0.09 -0.49 16 22 N -0.91 -28.55 13.70 55.49 0.76 -27.79 16 23 Si 1.05 26.82 24.74 -169.99 -4.21 22.62 16 24 H -0.29 -7.01 6.74 56.52 0.38 -6.63 16 25 H -0.30 -7.68 7.11 56.52 0.40 -7.28 16 26 H -0.29 -7.16 6.87 56.52 0.39 -6.77 16 27 C 0.12 2.46 6.58 -2.41 -0.02 2.44 16 28 C -0.05 -0.50 9.21 -39.17 -0.36 -0.86 16 29 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.14 0.90 7.61 -52.48 -0.40 0.50 16 33 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 34 H 0.14 1.35 7.76 -52.48 -0.41 0.95 16 35 H 0.07 0.87 6.89 -51.92 -0.36 0.52 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.03 0.64 3.71 -51.93 -0.19 0.44 16 41 H 0.04 0.99 8.01 -51.93 -0.42 0.58 16 42 H 0.26 8.18 8.73 -40.82 -0.36 7.82 16 43 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.04 0.87 7.33 -51.93 -0.38 0.49 16 45 H 0.14 1.48 7.63 -52.49 -0.40 1.08 16 LS Contribution 368.59 15.07 5.55 5.55 Total: -1.00 -33.66 368.59 -7.77 -41.43 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: -6.73 Total: -2.63 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: -1.56 Total: -6.96 kcal Atomic # 7 Polarization: -43.69 SS G_CDS: 0.20 Total: -43.48 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -1.03 Total: -16.52 kcal Atomic # 14 Polarization: 26.82 SS G_CDS: -4.21 Total: 22.62 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.66 -7.77 -41.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223790711.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.089 kcal (2) G-P(sol) polarization free energy of solvation -33.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds