Wall clock time and date at job start Sat Apr 11 2020 00:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34712 * 116.99834 * 2 1 4 4 O 1.21473 * 120.00163 * 0.02562 * 3 2 1 5 5 C 1.47729 * 120.00032 * 179.97438 * 3 2 1 6 6 C 1.39654 * 120.14552 * 0.02562 * 5 3 2 7 7 C 1.37924 * 119.84368 * 180.02562 * 6 5 3 8 8 C 1.38386 * 120.15413 * 0.02562 * 7 6 5 9 9 C 1.38349 * 120.29906 * 359.97438 * 8 7 6 10 10 C 1.50705 * 119.92345 * 179.97438 * 9 8 7 11 11 H 1.09000 * 109.47260 * 205.00117 * 10 9 8 12 12 C 1.53001 * 109.46987 * 85.00049 * 10 9 8 13 13 O 1.42906 * 109.46942 * 325.00275 * 10 9 8 14 14 C 1.42903 * 113.99676 * 210.00167 * 13 10 9 15 15 C 1.53514 * 114.17081 * 149.99722 * 14 13 10 16 16 N 1.47483 * 87.92777 * 87.61994 * 15 14 13 17 17 C 1.46903 * 110.99717 * 138.70421 * 16 15 14 18 18 C 1.50694 * 109.47066 * 169.99804 * 17 16 15 19 19 H 1.08000 * 120.00563 * 359.97438 * 18 17 16 20 20 C 1.37885 * 119.99902 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99913 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99766 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47353 * 269.99586 * 22 20 18 24 24 H 1.48501 * 109.47293 * 30.00037 * 22 20 18 25 25 H 1.48504 * 109.46680 * 149.99835 * 22 20 18 26 26 C 1.47480 * 87.83900 * 27.00973 * 16 15 14 27 27 C 1.37958 * 120.15157 * 0.27307 * 9 8 7 28 28 H 1.09003 * 109.47251 * 299.99860 * 1 2 3 29 29 H 1.08999 * 109.47305 * 60.00017 * 1 2 3 30 30 H 1.08997 * 109.47205 * 179.97438 * 1 2 3 31 31 H 1.08002 * 120.07735 * 0.02562 * 6 5 3 32 32 H 1.08004 * 119.92305 * 179.97438 * 7 6 5 33 33 H 1.07994 * 119.84858 * 179.97438 * 8 7 6 34 34 H 1.08998 * 109.46823 * 180.02562 * 12 10 9 35 35 H 1.09001 * 109.47161 * 299.99564 * 12 10 9 36 36 H 1.08996 * 109.47427 * 59.99660 * 12 10 9 37 37 H 1.08997 * 113.25538 * 17.04389 * 14 13 10 38 38 H 1.09000 * 113.47331 * 332.85672 * 15 14 13 39 39 H 1.08995 * 113.52785 * 202.39262 * 15 14 13 40 40 H 1.09007 * 109.47052 * 49.99488 * 17 16 15 41 41 H 1.09003 * 109.46808 * 290.00181 * 17 16 15 42 42 H 0.97001 * 119.99646 * 179.97438 * 21 20 18 43 43 H 1.09004 * 113.47132 * 87.75237 * 26 16 15 44 44 H 1.09000 * 113.47538 * 218.21976 * 26 16 15 45 45 H 1.08009 * 120.07662 * 179.72522 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4019 2.2191 0.0005 5 6 3.5388 1.2777 0.0006 6 6 4.3024 0.1084 0.0006 7 6 5.6794 0.1879 0.0016 8 6 6.3044 1.4226 0.0033 9 6 5.5539 2.5848 0.0033 10 6 6.2434 3.9249 0.0056 11 1 5.5808 4.6737 0.4397 12 6 6.5906 4.3222 -1.4305 13 8 7.4416 3.8427 0.7801 14 6 7.8086 5.0694 1.4147 15 6 8.5684 4.8904 2.7366 16 7 9.8150 4.8336 1.9505 17 6 10.8880 5.5897 2.6099 18 6 12.1973 5.3109 1.9180 19 1 12.2294 4.6389 1.0732 20 6 13.3548 5.9130 2.3642 21 7 13.3159 6.7310 3.3933 22 14 14.9779 5.5669 1.5069 23 1 15.6352 4.3979 2.1446 24 1 14.7276 5.2727 0.0730 25 1 15.8614 6.7550 1.6216 26 6 9.1414 5.6548 0.9273 27 6 4.1759 2.5198 0.0074 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.8159 -0.8558 -0.0003 32 1 6.2712 -0.7156 0.0021 33 1 7.3829 1.4790 0.0045 34 1 7.0897 5.2913 -1.4288 35 1 7.2533 3.5735 -1.8646 36 1 5.6768 4.3848 -2.0213 37 1 6.9923 5.7900 1.4631 38 1 8.3349 3.9568 3.2486 39 1 8.5086 5.7579 3.3937 40 1 10.9572 5.2863 3.6547 41 1 10.6678 6.6559 2.5551 42 1 14.1302 7.1543 3.7073 43 1 9.2341 6.7269 1.1011 44 1 9.3937 5.3692 -0.0939 45 1 3.5912 3.4280 0.0118 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223793745.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:04:10 Heat of formation + Delta-G solvation = -62.205502 kcal Electronic energy + Delta-G solvation = -25827.537481 eV Core-core repulsion = 22004.775755 eV Total energy + Delta-G solvation = -3822.761726 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.89033 -39.86266 -39.11108 -36.88178 -36.64322 -33.09522 -32.48447 -31.58226 -29.60704 -28.94701 -28.05882 -25.46248 -25.07539 -24.48060 -23.75718 -21.89118 -21.61606 -20.73646 -19.38716 -18.09542 -17.48372 -16.68825 -16.51456 -16.30206 -16.14257 -15.65925 -15.18574 -14.82871 -14.60467 -14.35617 -13.96007 -13.88578 -13.76779 -13.66770 -13.40943 -12.72475 -12.68977 -12.54116 -12.32732 -12.17553 -11.94747 -11.78034 -11.77230 -11.18771 -11.17903 -11.13250 -10.87907 -10.81493 -10.70848 -10.47584 -10.20346 -9.64423 -9.30258 -9.27324 -9.21034 -9.02368 -8.41063 -7.78337 -6.01899 -4.02568 0.44872 1.04492 2.26213 2.31289 3.33461 3.38908 3.43590 3.44528 3.63077 4.35500 4.43694 4.46412 4.61626 4.71702 4.80013 4.84495 4.89244 4.93253 5.01610 5.08334 5.12760 5.20230 5.24592 5.29411 5.33452 5.49307 5.57853 5.60990 5.78281 5.88066 5.92632 5.97788 5.99064 6.11206 6.15943 6.21483 6.25913 6.30013 6.44257 6.58645 6.69976 7.18642 7.39371 7.45434 7.69174 7.89840 8.14276 8.49701 9.05359 9.61369 11.09230 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.029817 B = 0.002123 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.842581 B =13183.425939 C =13443.477978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.356 6.356 3 C 0.511 3.489 4 O -0.508 6.508 5 C -0.135 4.135 6 C -0.063 4.063 7 C -0.135 4.135 8 C -0.049 4.049 9 C -0.093 4.093 10 C 0.124 3.876 11 H 0.071 0.929 12 C -0.169 4.169 13 O -0.338 6.338 14 C 0.056 3.944 15 C -0.007 4.007 16 N -0.455 5.455 17 C 0.156 3.844 18 C -0.502 4.502 19 H 0.063 0.937 20 C 0.052 3.948 21 N -0.901 5.901 22 Si 0.899 3.101 23 H -0.280 1.280 24 H -0.273 1.273 25 H -0.287 1.287 26 C -0.007 4.007 27 C -0.047 4.047 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.103 0.897 31 H 0.136 0.864 32 H 0.134 0.866 33 H 0.141 0.859 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.070 0.930 40 H 0.028 0.972 41 H 0.002 0.998 42 H 0.261 0.739 43 H 0.069 0.931 44 H 0.079 0.921 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.310 -11.578 -8.231 28.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.272 6.272 3 C 0.357 3.643 4 O -0.397 6.397 5 C -0.136 4.136 6 C -0.081 4.081 7 C -0.153 4.153 8 C -0.067 4.067 9 C -0.093 4.093 10 C 0.066 3.934 11 H 0.089 0.911 12 C -0.227 4.227 13 O -0.256 6.256 14 C -0.002 4.002 15 C -0.137 4.137 16 N -0.178 5.178 17 C 0.030 3.970 18 C -0.540 4.540 19 H 0.081 0.919 20 C -0.148 4.148 21 N -0.541 5.541 22 Si 0.727 3.273 23 H -0.206 1.206 24 H -0.198 1.198 25 H -0.213 1.213 26 C -0.137 4.137 27 C -0.065 4.065 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.121 0.879 31 H 0.154 0.846 32 H 0.152 0.848 33 H 0.159 0.841 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.099 0.901 39 H 0.088 0.912 40 H 0.046 0.954 41 H 0.020 0.980 42 H 0.070 0.930 43 H 0.087 0.913 44 H 0.098 0.902 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -23.970 -11.982 -8.260 28.042 hybrid contribution 0.400 1.024 -0.034 1.100 sum -23.569 -10.958 -8.294 27.283 Atomic orbital electron populations 1.23292 0.75887 1.03820 1.02712 1.86541 1.23625 1.32686 1.84371 1.21250 0.89176 0.81396 0.72510 1.90836 1.66840 1.36030 1.45987 1.18935 0.88682 0.94962 1.10997 1.21462 0.94043 0.97705 0.94888 1.21237 0.94188 0.98346 1.01484 1.21467 1.01562 0.91277 0.92378 1.19740 0.92499 0.95484 1.01605 1.20929 0.86903 0.92934 0.92614 0.91141 1.22303 1.02125 1.02699 0.95534 1.87997 1.40754 1.31823 1.65038 1.23412 0.95692 0.86028 0.95110 1.24043 0.92845 1.01753 0.95058 1.69032 1.02368 1.39976 1.06430 1.20293 0.90199 0.91410 0.95119 1.21110 0.91422 1.26422 1.15076 0.91851 1.25018 0.99323 0.95230 0.95271 1.69959 1.28288 1.30417 1.25452 0.86472 0.83197 0.77632 0.79967 1.20622 1.19837 1.21338 1.24233 0.92651 0.96901 0.99892 1.21006 0.93606 0.96858 0.95014 0.91745 0.91788 0.87903 0.84581 0.84832 0.84073 0.91485 0.91391 0.91833 0.90986 0.90135 0.91230 0.95384 0.98005 0.92970 0.91313 0.90237 0.84578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.22 10.56 101.05 1.07 1.29 16 2 O -0.36 -3.24 9.82 -40.52 -0.40 -3.64 16 3 C 0.51 5.65 7.90 34.61 0.27 5.92 16 4 O -0.51 -6.74 16.14 -19.25 -0.31 -7.05 16 5 C -0.13 -1.42 5.87 -104.98 -0.62 -2.03 16 6 C -0.06 -0.56 9.62 -39.17 -0.38 -0.94 16 7 C -0.13 -1.22 10.03 -39.64 -0.40 -1.62 16 8 C -0.05 -0.53 9.35 -39.49 -0.37 -0.90 16 9 C -0.09 -1.04 5.00 -104.68 -0.52 -1.56 16 10 C 0.12 1.43 2.92 -27.88 -0.08 1.35 16 11 H 0.07 0.73 7.34 -51.93 -0.38 0.35 16 12 C -0.17 -1.77 9.51 37.16 0.35 -1.41 16 13 O -0.34 -5.04 9.17 -35.23 -0.32 -5.36 16 14 C 0.06 0.86 4.61 -26.20 -0.12 0.74 16 15 C -0.01 -0.13 7.52 -7.53 -0.06 -0.19 16 16 N -0.46 -10.13 6.32 -246.08 -1.55 -11.69 16 17 C 0.16 4.13 4.57 -4.98 -0.02 4.10 16 18 C -0.50 -14.53 9.39 -34.44 -0.32 -14.86 16 19 H 0.06 1.85 7.81 -52.49 -0.41 1.44 16 20 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 21 N -0.90 -27.06 13.29 55.43 0.74 -26.33 16 22 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 C -0.01 -0.13 7.55 -7.54 -0.06 -0.19 16 27 C -0.05 -0.50 9.22 -39.17 -0.36 -0.86 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.14 0.96 7.61 -52.49 -0.40 0.56 16 32 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 33 H 0.14 1.63 7.62 -52.49 -0.40 1.23 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.91 7.47 -51.93 -0.39 0.52 16 38 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 39 H 0.07 1.20 7.91 -51.93 -0.41 0.79 16 40 H 0.03 0.79 8.08 -51.92 -0.42 0.37 16 41 H 0.00 0.06 7.30 -51.93 -0.38 -0.32 16 42 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 43 H 0.07 1.27 7.42 -51.93 -0.39 0.88 16 44 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 45 H 0.14 1.38 7.65 -52.48 -0.40 0.98 16 LS Contribution 382.38 15.07 5.76 5.76 Total: -1.00 -33.42 382.38 -9.73 -43.15 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -6.91 Total: -2.12 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: -1.71 Total: -9.74 kcal Atomic # 7 Polarization: -37.20 SS G_CDS: -0.82 Total: -38.02 kcal Atomic # 8 Polarization: -15.02 SS G_CDS: -1.03 Total: -16.05 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.42 -9.73 -43.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223793745.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.051 kcal (2) G-P(sol) polarization free energy of solvation -33.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds