Wall clock time and date at job start Sat Apr 11 2020 00:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34712 * 116.99834 * 2 1 4 4 O 1.21473 * 120.00163 * 0.02562 * 3 2 1 5 5 C 1.47729 * 120.00032 * 179.97438 * 3 2 1 6 6 C 1.39654 * 120.14552 * 0.02562 * 5 3 2 7 7 C 1.37924 * 119.84368 * 180.02562 * 6 5 3 8 8 C 1.38386 * 120.15413 * 0.02562 * 7 6 5 9 9 C 1.38349 * 120.29906 * 359.97438 * 8 7 6 10 10 C 1.50705 * 119.92345 * 179.97438 * 9 8 7 11 11 H 1.09000 * 109.47260 * 205.00117 * 10 9 8 12 12 C 1.53001 * 109.46987 * 85.00049 * 10 9 8 13 13 O 1.42906 * 109.46942 * 325.00275 * 10 9 8 14 14 C 1.42903 * 113.99676 * 210.00167 * 13 10 9 15 15 C 1.53514 * 114.17081 * 149.99722 * 14 13 10 16 16 N 1.47483 * 87.92777 * 87.61994 * 15 14 13 17 17 C 1.46903 * 110.99717 * 138.70421 * 16 15 14 18 18 C 1.50694 * 109.47066 * 169.99804 * 17 16 15 19 19 H 1.08000 * 120.00563 * 359.97438 * 18 17 16 20 20 C 1.37885 * 119.99902 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99913 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99766 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47353 * 269.99586 * 22 20 18 24 24 H 1.48501 * 109.47293 * 30.00037 * 22 20 18 25 25 H 1.48504 * 109.46680 * 149.99835 * 22 20 18 26 26 C 1.47480 * 87.83900 * 27.00973 * 16 15 14 27 27 C 1.37958 * 120.15157 * 0.27307 * 9 8 7 28 28 H 1.09003 * 109.47251 * 299.99860 * 1 2 3 29 29 H 1.08999 * 109.47305 * 60.00017 * 1 2 3 30 30 H 1.08997 * 109.47205 * 179.97438 * 1 2 3 31 31 H 1.08002 * 120.07735 * 0.02562 * 6 5 3 32 32 H 1.08004 * 119.92305 * 179.97438 * 7 6 5 33 33 H 1.07994 * 119.84858 * 179.97438 * 8 7 6 34 34 H 1.08998 * 109.46823 * 180.02562 * 12 10 9 35 35 H 1.09001 * 109.47161 * 299.99564 * 12 10 9 36 36 H 1.08996 * 109.47427 * 59.99660 * 12 10 9 37 37 H 1.08997 * 113.25538 * 17.04389 * 14 13 10 38 38 H 1.09000 * 113.47331 * 332.85672 * 15 14 13 39 39 H 1.08995 * 113.52785 * 202.39262 * 15 14 13 40 40 H 1.09007 * 109.47052 * 49.99488 * 17 16 15 41 41 H 1.09003 * 109.46808 * 290.00181 * 17 16 15 42 42 H 0.97001 * 119.99646 * 179.97438 * 21 20 18 43 43 H 1.09004 * 113.47132 * 87.75237 * 26 16 15 44 44 H 1.09000 * 113.47538 * 218.21976 * 26 16 15 45 45 H 1.08009 * 120.07662 * 179.72522 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2003 0.0000 4 8 1.4019 2.2191 0.0005 5 6 3.5388 1.2777 0.0006 6 6 4.3024 0.1084 0.0006 7 6 5.6794 0.1879 0.0016 8 6 6.3044 1.4226 0.0033 9 6 5.5539 2.5848 0.0033 10 6 6.2434 3.9249 0.0056 11 1 5.5808 4.6737 0.4397 12 6 6.5906 4.3222 -1.4305 13 8 7.4416 3.8427 0.7801 14 6 7.8086 5.0694 1.4147 15 6 8.5684 4.8904 2.7366 16 7 9.8150 4.8336 1.9505 17 6 10.8880 5.5897 2.6099 18 6 12.1973 5.3109 1.9180 19 1 12.2294 4.6389 1.0732 20 6 13.3548 5.9130 2.3642 21 7 13.3159 6.7310 3.3933 22 14 14.9779 5.5669 1.5069 23 1 15.6352 4.3979 2.1446 24 1 14.7276 5.2727 0.0730 25 1 15.8614 6.7550 1.6216 26 6 9.1414 5.6548 0.9273 27 6 4.1759 2.5198 0.0074 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.8159 -0.8558 -0.0003 32 1 6.2712 -0.7156 0.0021 33 1 7.3829 1.4790 0.0045 34 1 7.0897 5.2913 -1.4288 35 1 7.2533 3.5735 -1.8646 36 1 5.6768 4.3848 -2.0213 37 1 6.9923 5.7900 1.4631 38 1 8.3349 3.9568 3.2486 39 1 8.5086 5.7579 3.3937 40 1 10.9572 5.2863 3.6547 41 1 10.6678 6.6559 2.5551 42 1 14.1302 7.1543 3.7073 43 1 9.2341 6.7269 1.1011 44 1 9.3937 5.3692 -0.0939 45 1 3.5912 3.4280 0.0118 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223793745.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:04:09 Heat of formation + Delta-G solvation = -83.656998 kcal Electronic energy + Delta-G solvation = -25828.467688 eV Core-core repulsion = 22004.775755 eV Total energy + Delta-G solvation = -3823.691933 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.68544 -41.14234 -40.08606 -37.96745 -37.49966 -35.04850 -33.65648 -32.35522 -30.99230 -30.24845 -28.62609 -27.20759 -26.70073 -25.25321 -24.64963 -23.56301 -22.60809 -21.58612 -20.75746 -18.94630 -18.52918 -18.26611 -17.49143 -17.41461 -17.12019 -16.94752 -16.39544 -16.26376 -15.79960 -15.50511 -15.20096 -14.96160 -14.79456 -14.57334 -14.47494 -14.12866 -13.80455 -13.59907 -13.46673 -13.13832 -13.07073 -13.05918 -12.87878 -12.72032 -12.58449 -12.35896 -12.24709 -11.94999 -11.84198 -11.68102 -11.65546 -11.43981 -11.23583 -10.62568 -10.48430 -10.06358 -9.83691 -9.53479 -8.23121 -6.33136 -0.35192 0.28454 1.39044 1.40899 1.44896 1.52403 1.62725 2.38982 2.45783 2.75698 3.08670 3.43570 3.46947 3.63266 3.75060 3.87436 4.00085 4.14078 4.15747 4.24339 4.30611 4.33468 4.34663 4.41339 4.46663 4.53041 4.67084 4.68143 4.71195 4.75909 4.80380 4.86070 4.93344 5.01312 5.02859 5.07273 5.20615 5.22413 5.29574 5.43072 5.48968 5.59294 5.81583 5.82576 6.10373 6.35308 6.50782 6.61354 6.81378 7.36310 8.87839 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.029817 B = 0.002123 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.842581 B =13183.425939 C =13443.477978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.355 6.355 3 C 0.513 3.487 4 O -0.537 6.537 5 C -0.146 4.146 6 C -0.054 4.054 7 C -0.130 4.130 8 C -0.062 4.062 9 C -0.101 4.101 10 C 0.120 3.880 11 H 0.088 0.912 12 C -0.165 4.165 13 O -0.355 6.355 14 C 0.085 3.915 15 C -0.011 4.011 16 N -0.483 5.483 17 C 0.172 3.828 18 C -0.525 4.525 19 H 0.055 0.945 20 C 0.000 4.000 21 N -0.933 5.933 22 Si 0.971 3.029 23 H -0.273 1.273 24 H -0.266 1.266 25 H -0.278 1.278 26 C -0.011 4.011 27 C -0.051 4.051 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.136 0.864 31 H 0.159 0.841 32 H 0.157 0.843 33 H 0.130 0.870 34 H 0.065 0.935 35 H 0.057 0.943 36 H 0.080 0.920 37 H 0.111 0.889 38 H 0.082 0.918 39 H 0.076 0.924 40 H -0.001 1.001 41 H -0.017 1.017 42 H 0.265 0.735 43 H 0.068 0.932 44 H 0.075 0.925 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.350 -12.814 -9.266 29.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.272 6.272 3 C 0.360 3.640 4 O -0.429 6.429 5 C -0.147 4.147 6 C -0.072 4.072 7 C -0.148 4.148 8 C -0.081 4.081 9 C -0.101 4.101 10 C 0.063 3.937 11 H 0.106 0.894 12 C -0.223 4.223 13 O -0.274 6.274 14 C 0.026 3.974 15 C -0.140 4.140 16 N -0.206 5.206 17 C 0.045 3.955 18 C -0.564 4.564 19 H 0.073 0.927 20 C -0.197 4.197 21 N -0.574 5.574 22 Si 0.795 3.205 23 H -0.198 1.198 24 H -0.191 1.191 25 H -0.203 1.203 26 C -0.140 4.140 27 C -0.069 4.069 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.154 0.846 31 H 0.176 0.824 32 H 0.175 0.825 33 H 0.147 0.853 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.099 0.901 37 H 0.129 0.871 38 H 0.100 0.900 39 H 0.094 0.906 40 H 0.017 0.983 41 H 0.001 0.999 42 H 0.074 0.926 43 H 0.086 0.914 44 H 0.094 0.906 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -25.034 -13.243 -9.304 29.810 hybrid contribution 0.612 1.317 0.284 1.480 sum -24.422 -11.926 -9.020 28.636 Atomic orbital electron populations 1.23606 0.74177 1.05999 1.02651 1.86530 1.25303 1.31535 1.83787 1.21361 0.89363 0.81531 0.71779 1.90818 1.67467 1.37020 1.47564 1.19075 0.88734 0.95488 1.11430 1.21698 0.93901 0.98155 0.93491 1.21479 0.94472 0.98508 1.00354 1.21510 1.01115 0.92183 0.93246 1.19702 0.92640 0.95344 1.02433 1.21133 0.85941 0.93882 0.92741 0.89445 1.22271 1.02738 1.02181 0.95096 1.87983 1.42427 1.31556 1.65413 1.23146 0.95285 0.86662 0.92277 1.24119 0.91316 1.02177 0.96434 1.68948 1.03227 1.40175 1.08237 1.19956 0.91307 0.90606 0.93633 1.21416 0.93042 1.26658 1.15257 0.92658 1.25939 1.03181 0.94748 0.95877 1.70072 1.29538 1.31099 1.26656 0.85365 0.78328 0.77836 0.78983 1.19831 1.19071 1.20349 1.24277 0.94428 0.96619 0.98695 1.21029 0.93391 0.97277 0.95178 0.91933 0.91799 0.84628 0.82382 0.82529 0.85251 0.91614 0.92385 0.90096 0.87105 0.89991 0.90575 0.98337 0.99878 0.92595 0.91358 0.90620 0.84364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 113.37 1.20 1.49 16 2 O -0.36 -5.83 9.82 -56.22 -0.55 -6.38 16 3 C 0.51 10.74 7.90 70.33 0.56 11.29 16 4 O -0.54 -13.94 16.14 19.92 0.32 -13.62 16 5 C -0.15 -2.87 5.87 -20.10 -0.12 -2.98 16 6 C -0.05 -0.86 9.62 22.54 0.22 -0.64 16 7 C -0.13 -2.12 10.03 22.23 0.22 -1.89 16 8 C -0.06 -1.30 9.35 22.33 0.21 -1.09 16 9 C -0.10 -2.13 5.00 -19.90 -0.10 -2.23 16 10 C 0.12 2.59 2.92 29.85 0.09 2.68 16 11 H 0.09 1.59 7.34 -2.39 -0.02 1.57 16 12 C -0.17 -3.23 9.51 71.98 0.68 -2.55 16 13 O -0.36 -10.21 9.17 -148.98 -1.37 -11.57 16 14 C 0.08 2.49 4.61 30.94 0.14 2.63 16 15 C -0.01 -0.40 7.52 83.58 0.63 0.23 16 16 N -0.48 -21.93 6.32 -932.86 -5.89 -27.82 16 17 C 0.17 9.44 4.57 85.55 0.39 9.83 16 18 C -0.53 -31.15 9.39 25.60 0.24 -30.91 16 19 H 0.06 3.29 7.81 -2.91 -0.02 3.26 16 20 C 0.00 0.03 5.46 84.66 0.46 0.49 16 21 N -0.93 -56.91 13.29 21.45 0.28 -56.63 16 22 Si 0.97 45.35 29.54 68.60 2.03 47.38 16 23 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 24 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 25 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 26 C -0.01 -0.40 7.55 83.58 0.63 0.24 16 27 C -0.05 -1.03 9.22 22.53 0.21 -0.82 16 28 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.14 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.16 1.76 7.61 -2.91 -0.02 1.74 16 32 H 0.16 1.76 8.06 -2.91 -0.02 1.74 16 33 H 0.13 2.98 7.62 -2.91 -0.02 2.95 16 34 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.11 2.45 7.47 -2.39 -0.02 2.43 16 38 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 39 H 0.08 2.62 7.91 -2.39 -0.02 2.60 16 40 H 0.00 -0.09 8.08 -2.38 -0.02 -0.11 16 41 H -0.02 -0.94 7.30 -2.39 -0.02 -0.96 16 42 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 43 H 0.07 2.53 7.42 -2.39 -0.02 2.51 16 44 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 45 H 0.14 2.68 7.65 -2.91 -0.02 2.65 16 Total: -1.00 -73.20 382.38 1.46 -71.75 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: 0.97 Total: 11.14 kcal Atomic # 6 Polarization: -19.91 SS G_CDS: 5.66 Total: -14.25 kcal Atomic # 7 Polarization: -78.84 SS G_CDS: -5.61 Total: -84.45 kcal Atomic # 8 Polarization: -29.97 SS G_CDS: -1.60 Total: -31.57 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -73.20 1.46 -71.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223793745.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.911 kcal (2) G-P(sol) polarization free energy of solvation -73.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds