Wall clock time and date at job start Sat Apr 11 2020 00:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09003 * 109.47365 * 2 1 4 4 C 1.52998 * 109.47384 * 119.99879 * 2 1 3 5 5 N 1.46904 * 109.47174 * 183.29918 * 4 2 1 6 6 C 1.47019 * 110.99534 * 75.67072 * 5 4 2 7 7 C 1.53101 * 109.25381 * 182.39001 * 6 5 4 8 8 O 1.43017 * 109.25860 * 303.14912 * 7 6 5 9 9 C 1.43018 * 113.73854 * 58.67397 * 8 7 6 10 10 C 1.47015 * 111.00048 * 199.30017 * 5 4 2 11 11 O 1.42903 * 109.47247 * 239.99995 * 2 1 3 12 12 C 1.35666 * 116.99721 * 85.01394 * 11 2 1 13 13 C 1.39163 * 119.90626 * 354.39252 * 12 11 2 14 14 C 1.37594 * 120.09462 * 179.72437 * 13 12 11 15 15 C 1.39950 * 119.90267 * 0.57082 * 14 13 12 16 16 C 1.47568 * 120.09291 * 179.68238 * 15 14 13 17 17 O 1.21828 * 119.99742 * 180.02562 * 16 15 14 18 18 C 1.41757 * 120.00163 * 0.02562 * 16 15 14 19 19 H 1.07999 * 119.99876 * 0.02562 * 18 16 15 20 20 C 1.40346 * 120.00090 * 180.02562 * 18 16 15 21 21 N 1.30531 * 119.99904 * 0.02562 * 20 18 16 22 22 Si 1.86797 * 120.00055 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47261 * 59.99311 * 22 20 18 24 24 H 1.48497 * 109.47166 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47062 * 299.99940 * 22 20 18 26 26 C 1.39957 * 119.81291 * 359.70340 * 15 14 13 27 27 C 1.37585 * 119.90184 * 359.97438 * 26 15 14 28 28 H 1.09003 * 109.47365 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46958 * 299.99689 * 1 2 3 30 30 H 1.08995 * 109.47776 * 59.99842 * 1 2 3 31 31 H 1.09009 * 109.47039 * 63.30725 * 4 2 1 32 32 H 1.08995 * 109.47383 * 303.30453 * 4 2 1 33 33 H 1.08998 * 109.50595 * 62.45672 * 6 5 4 34 34 H 1.09001 * 109.54228 * 302.34533 * 6 5 4 35 35 H 1.08998 * 109.50333 * 183.21235 * 7 6 5 36 36 H 1.09003 * 109.53946 * 63.10748 * 7 6 5 37 37 H 1.09005 * 109.50517 * 61.26010 * 9 8 7 38 38 H 1.08991 * 109.50465 * 181.39388 * 9 8 7 39 39 H 1.08999 * 109.51023 * 297.54634 * 10 5 4 40 40 H 1.09001 * 109.50413 * 57.67456 * 10 5 4 41 41 H 1.08004 * 119.95457 * 0.02562 * 13 12 11 42 42 H 1.08002 * 120.05393 * 180.25142 * 14 13 12 43 43 H 0.96998 * 120.00062 * 180.02562 * 21 20 18 44 44 H 1.08001 * 120.04229 * 179.97438 * 26 15 14 45 45 H 1.08007 * 119.94904 * 180.02562 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5068 -0.6525 1.2897 6 6 3.9605 0.6846 1.6992 7 6 5.4906 0.7294 1.6704 8 8 6.0087 -0.3007 2.5163 9 6 5.5873 -1.6162 2.1458 10 6 4.0583 -1.6848 2.1794 11 8 2.0063 -0.6736 -1.1668 12 6 2.1125 0.0614 -2.3021 13 6 1.6549 1.3755 -2.3232 14 6 1.7659 2.1264 -3.4708 15 6 2.3291 1.5630 -4.6215 16 6 2.4438 2.3622 -5.8567 17 8 2.9339 1.8699 -6.8575 18 6 1.9837 3.7029 -5.8787 19 1 1.5495 4.1394 -4.9914 20 6 2.0922 4.4628 -7.0536 21 7 2.6165 3.9350 -8.1262 22 14 1.4866 6.2296 -7.0824 23 1 2.2292 7.0241 -6.0713 24 1 1.7127 6.8085 -8.4311 25 1 0.0356 6.2607 -6.7679 26 6 2.7828 0.2392 -4.5975 27 6 2.6740 -0.5024 -3.4437 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.7258 -1.7646 1.2201 32 1 1.6291 -0.2428 2.1382 33 1 3.6092 0.8946 2.7095 34 1 3.5614 1.4312 1.0126 35 1 5.8330 1.7005 2.0278 36 1 5.8407 0.5730 0.6500 37 1 5.9397 -1.8412 1.1391 38 1 5.9997 -2.3415 2.8471 39 1 3.7085 -1.5127 3.1973 40 1 3.7305 -2.6684 1.8427 41 1 1.2164 1.8082 -1.4361 42 1 1.4142 3.1474 -3.4853 43 1 2.6919 4.4603 -8.9381 44 1 3.2177 -0.1995 -5.4835 45 1 3.0243 -1.5239 -3.4243 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233525511.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:04:28 Heat of formation + Delta-G solvation = -91.743907 kcal Electronic energy + Delta-G solvation = -26655.449117 eV Core-core repulsion = 22831.406510 eV Total energy + Delta-G solvation = -3824.042607 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.18964 -39.44959 -37.68015 -36.22901 -35.43269 -32.68041 -32.43984 -31.44044 -30.38144 -29.32996 -28.25558 -26.61384 -24.83662 -24.31711 -22.95933 -22.25913 -20.89213 -20.60217 -19.41192 -17.98230 -16.93470 -16.61797 -16.39429 -15.81159 -15.43831 -15.37403 -15.16921 -15.01873 -14.73693 -14.28243 -14.04799 -13.97983 -13.32744 -13.15900 -12.96800 -12.79278 -12.55466 -12.41356 -12.27663 -12.08686 -11.87941 -11.71685 -11.57717 -11.51001 -11.21609 -11.07577 -10.94895 -10.77740 -10.51221 -10.35495 -10.29602 -9.92395 -9.86088 -8.96179 -8.65535 -8.36984 -7.46319 -7.38436 -6.29171 -4.89613 1.91895 2.05667 3.06416 3.11881 3.13620 3.36015 3.42774 3.62774 4.00458 4.07291 4.49761 4.61967 4.64318 4.67786 4.82413 4.87662 4.92784 4.94448 5.04804 5.14155 5.27036 5.33853 5.36759 5.37923 5.44791 5.49284 5.50762 5.57732 5.70424 5.71855 5.83750 5.96478 5.98013 6.15177 6.18217 6.36943 6.64108 6.65375 6.68903 6.87859 6.90332 7.09469 7.25697 7.41404 7.44999 7.93111 8.03820 8.79882 8.86151 10.32672 10.55016 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.017524 B = 0.002758 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.382985 B =10151.278169 C =10353.572034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.090 3.910 3 H 0.072 0.928 4 C 0.061 3.939 5 N -0.529 5.529 6 C 0.015 3.985 7 C 0.063 3.937 8 O -0.388 6.388 9 C 0.063 3.937 10 C 0.020 3.980 11 O -0.299 6.299 12 C 0.121 3.879 13 C -0.226 4.226 14 C -0.056 4.056 15 C -0.140 4.140 16 C 0.390 3.610 17 O -0.544 6.544 18 C -0.519 4.519 19 H 0.072 0.928 20 C 0.080 3.920 21 N -0.736 5.736 22 Si 0.906 3.094 23 H -0.265 1.265 24 H -0.278 1.278 25 H -0.265 1.265 26 C -0.055 4.055 27 C -0.164 4.164 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.055 0.945 33 H 0.042 0.958 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.097 0.903 39 H 0.040 0.960 40 H 0.087 0.913 41 H 0.118 0.882 42 H 0.129 0.871 43 H 0.274 0.726 44 H 0.130 0.870 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.773 -7.072 21.700 22.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.032 3.968 3 H 0.090 0.910 4 C -0.067 4.067 5 N -0.254 5.254 6 C -0.113 4.113 7 C -0.014 4.014 8 O -0.306 6.306 9 C -0.014 4.014 10 C -0.108 4.108 11 O -0.212 6.212 12 C 0.076 3.924 13 C -0.245 4.245 14 C -0.075 4.075 15 C -0.141 4.141 16 C 0.286 3.714 17 O -0.434 6.434 18 C -0.550 4.550 19 H 0.091 0.909 20 C -0.143 4.143 21 N -0.365 5.365 22 Si 0.730 3.270 23 H -0.189 1.189 24 H -0.203 1.203 25 H -0.189 1.189 26 C -0.074 4.074 27 C -0.183 4.183 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.103 0.897 32 H 0.073 0.927 33 H 0.060 0.940 34 H 0.105 0.895 35 H 0.116 0.884 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.115 0.885 39 H 0.058 0.942 40 H 0.105 0.895 41 H 0.135 0.865 42 H 0.147 0.853 43 H 0.085 0.915 44 H 0.148 0.852 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -0.127 -7.600 20.773 22.120 hybrid contribution -1.073 1.249 0.790 1.826 sum -1.200 -6.351 21.563 22.511 Atomic orbital electron populations 1.22362 0.95073 1.03328 1.03114 1.22282 0.93392 0.96761 0.84341 0.90982 1.22233 0.87156 1.02041 0.95291 1.62092 1.08788 1.03600 1.50945 1.22867 0.97222 0.91605 0.99575 1.22669 0.91743 0.91464 0.95503 1.87969 1.72174 1.15372 1.55099 1.22666 0.92691 0.84739 1.01321 1.22788 0.96496 0.96500 0.94997 1.86040 1.81287 1.37739 1.16178 1.19094 0.96609 0.90422 0.86286 1.21133 1.08924 0.94536 0.99879 1.21331 0.95440 0.99438 0.91260 1.21772 0.99082 0.95052 0.98220 1.18058 0.81011 0.87645 0.84654 1.90502 1.44617 1.73346 1.34944 1.20892 1.38031 0.98428 0.97644 0.90941 1.26003 0.93366 0.99959 0.95019 1.69949 1.28920 1.36580 1.01015 0.86449 0.80152 0.82173 0.78268 1.18916 1.20266 1.18935 1.21213 0.95954 0.93620 0.96582 1.20269 1.05750 1.00707 0.91566 0.91490 0.91439 0.91008 0.89656 0.92720 0.94015 0.89482 0.88365 0.91796 0.91952 0.88533 0.94165 0.89463 0.86450 0.85286 0.91459 0.85202 0.86213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.75 9.16 37.15 0.34 -1.41 16 2 C 0.09 1.01 2.30 -26.74 -0.06 0.95 16 3 H 0.07 0.83 4.95 -51.93 -0.26 0.57 16 4 C 0.06 0.57 4.67 -3.82 -0.02 0.55 16 5 N -0.53 -5.50 4.58 -234.30 -1.07 -6.58 16 6 C 0.02 0.15 5.47 -3.71 -0.02 0.13 16 7 C 0.06 0.63 7.01 37.21 0.26 0.89 16 8 O -0.39 -4.25 10.83 -35.23 -0.38 -4.64 16 9 C 0.06 0.56 7.01 37.21 0.26 0.82 16 10 C 0.02 0.18 5.60 -3.71 -0.02 0.16 16 11 O -0.30 -4.48 9.71 -18.70 -0.18 -4.66 16 12 C 0.12 2.09 6.62 -38.90 -0.26 1.83 16 13 C -0.23 -3.87 8.21 -39.47 -0.32 -4.19 16 14 C -0.06 -1.14 9.43 -39.18 -0.37 -1.51 16 15 C -0.14 -3.33 5.89 -104.81 -0.62 -3.94 16 16 C 0.39 11.15 6.91 -34.43 -0.24 10.91 16 17 O -0.54 -17.46 14.89 5.07 0.08 -17.39 16 18 C -0.52 -14.27 8.86 -37.45 -0.33 -14.60 16 19 H 0.07 1.79 6.01 -52.49 -0.32 1.48 16 20 C 0.08 2.15 5.50 -17.31 -0.10 2.05 16 21 N -0.74 -21.28 11.73 55.57 0.65 -20.63 16 22 Si 0.91 19.20 29.56 -169.99 -5.03 14.18 16 23 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 24 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 25 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 26 C -0.06 -1.20 9.59 -39.18 -0.38 -1.57 16 27 C -0.16 -3.06 9.97 -39.48 -0.39 -3.45 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.80 6.90 -51.93 -0.36 0.44 16 31 H 0.08 0.76 7.86 -51.92 -0.41 0.35 16 32 H 0.05 0.42 7.99 -51.93 -0.41 0.01 16 33 H 0.04 0.38 8.13 -51.93 -0.42 -0.05 16 34 H 0.09 0.86 6.76 -51.93 -0.35 0.51 16 35 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.09 0.68 8.02 -51.93 -0.42 0.26 16 41 H 0.12 1.66 5.40 -52.48 -0.28 1.38 16 42 H 0.13 2.50 6.19 -52.49 -0.33 2.18 16 43 H 0.27 7.11 8.29 -40.82 -0.34 6.78 16 44 H 0.13 2.86 7.65 -52.49 -0.40 2.46 16 45 H 0.12 1.98 8.06 -52.48 -0.42 1.56 16 LS Contribution 364.03 15.07 5.49 5.49 Total: -1.00 -33.69 364.03 -9.18 -42.87 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -6.47 Total: 3.75 kcal Atomic # 6 Polarization: -10.14 SS G_CDS: -2.26 Total: -12.40 kcal Atomic # 7 Polarization: -26.78 SS G_CDS: -0.42 Total: -27.21 kcal Atomic # 8 Polarization: -26.20 SS G_CDS: -0.49 Total: -26.69 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.03 Total: 14.18 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.69 -9.18 -42.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233525511.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.871 kcal (2) G-P(sol) polarization free energy of solvation -33.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds