Wall clock time and date at job start Sat Apr 11 2020 00:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09003 * 109.47365 * 2 1 4 4 C 1.52998 * 109.47384 * 119.99879 * 2 1 3 5 5 N 1.46904 * 109.47174 * 183.29918 * 4 2 1 6 6 C 1.47019 * 110.99534 * 75.67072 * 5 4 2 7 7 C 1.53101 * 109.25381 * 182.39001 * 6 5 4 8 8 O 1.43017 * 109.25860 * 303.14912 * 7 6 5 9 9 C 1.43018 * 113.73854 * 58.67397 * 8 7 6 10 10 C 1.47015 * 111.00048 * 199.30017 * 5 4 2 11 11 O 1.42903 * 109.47247 * 239.99995 * 2 1 3 12 12 C 1.35666 * 116.99721 * 85.01394 * 11 2 1 13 13 C 1.39163 * 119.90626 * 354.39252 * 12 11 2 14 14 C 1.37594 * 120.09462 * 179.72437 * 13 12 11 15 15 C 1.39950 * 119.90267 * 0.57082 * 14 13 12 16 16 C 1.47568 * 120.09291 * 179.68238 * 15 14 13 17 17 O 1.21828 * 119.99742 * 180.02562 * 16 15 14 18 18 C 1.41757 * 120.00163 * 0.02562 * 16 15 14 19 19 H 1.07999 * 119.99876 * 0.02562 * 18 16 15 20 20 C 1.40346 * 120.00090 * 180.02562 * 18 16 15 21 21 N 1.30531 * 119.99904 * 0.02562 * 20 18 16 22 22 Si 1.86797 * 120.00055 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47261 * 59.99311 * 22 20 18 24 24 H 1.48497 * 109.47166 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47062 * 299.99940 * 22 20 18 26 26 C 1.39957 * 119.81291 * 359.70340 * 15 14 13 27 27 C 1.37585 * 119.90184 * 359.97438 * 26 15 14 28 28 H 1.09003 * 109.47365 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46958 * 299.99689 * 1 2 3 30 30 H 1.08995 * 109.47776 * 59.99842 * 1 2 3 31 31 H 1.09009 * 109.47039 * 63.30725 * 4 2 1 32 32 H 1.08995 * 109.47383 * 303.30453 * 4 2 1 33 33 H 1.08998 * 109.50595 * 62.45672 * 6 5 4 34 34 H 1.09001 * 109.54228 * 302.34533 * 6 5 4 35 35 H 1.08998 * 109.50333 * 183.21235 * 7 6 5 36 36 H 1.09003 * 109.53946 * 63.10748 * 7 6 5 37 37 H 1.09005 * 109.50517 * 61.26010 * 9 8 7 38 38 H 1.08991 * 109.50465 * 181.39388 * 9 8 7 39 39 H 1.08999 * 109.51023 * 297.54634 * 10 5 4 40 40 H 1.09001 * 109.50413 * 57.67456 * 10 5 4 41 41 H 1.08004 * 119.95457 * 0.02562 * 13 12 11 42 42 H 1.08002 * 120.05393 * 180.25142 * 14 13 12 43 43 H 0.96998 * 120.00062 * 180.02562 * 21 20 18 44 44 H 1.08001 * 120.04229 * 179.97438 * 26 15 14 45 45 H 1.08007 * 119.94904 * 180.02562 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5068 -0.6525 1.2897 6 6 3.9605 0.6846 1.6992 7 6 5.4906 0.7294 1.6704 8 8 6.0087 -0.3007 2.5163 9 6 5.5873 -1.6162 2.1458 10 6 4.0583 -1.6848 2.1794 11 8 2.0063 -0.6736 -1.1668 12 6 2.1125 0.0614 -2.3021 13 6 1.6549 1.3755 -2.3232 14 6 1.7659 2.1264 -3.4708 15 6 2.3291 1.5630 -4.6215 16 6 2.4438 2.3622 -5.8567 17 8 2.9339 1.8699 -6.8575 18 6 1.9837 3.7029 -5.8787 19 1 1.5495 4.1394 -4.9914 20 6 2.0922 4.4628 -7.0536 21 7 2.6165 3.9350 -8.1262 22 14 1.4866 6.2296 -7.0824 23 1 2.2292 7.0241 -6.0713 24 1 1.7127 6.8085 -8.4311 25 1 0.0356 6.2607 -6.7679 26 6 2.7828 0.2392 -4.5975 27 6 2.6740 -0.5024 -3.4437 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.7258 -1.7646 1.2201 32 1 1.6291 -0.2428 2.1382 33 1 3.6092 0.8946 2.7095 34 1 3.5614 1.4312 1.0126 35 1 5.8330 1.7005 2.0278 36 1 5.8407 0.5730 0.6500 37 1 5.9397 -1.8412 1.1391 38 1 5.9997 -2.3415 2.8471 39 1 3.7085 -1.5127 3.1973 40 1 3.7305 -2.6684 1.8427 41 1 1.2164 1.8082 -1.4361 42 1 1.4142 3.1474 -3.4853 43 1 2.6919 4.4603 -8.9381 44 1 3.2177 -0.1995 -5.4835 45 1 3.0243 -1.5239 -3.4243 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233525511.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:04:27 Heat of formation + Delta-G solvation = -114.880983 kcal Electronic energy + Delta-G solvation = -26656.452416 eV Core-core repulsion = 22831.406510 eV Total energy + Delta-G solvation = -3825.045906 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.30479 -40.41987 -39.30043 -37.71237 -36.63684 -34.77539 -33.41365 -32.14909 -31.88955 -30.99196 -29.00654 -28.57676 -25.65177 -25.04047 -24.43983 -23.75777 -22.15728 -21.44345 -20.98976 -19.22985 -18.58481 -17.69391 -17.53318 -17.14976 -16.76677 -16.14715 -16.05906 -15.97052 -15.91996 -15.78336 -15.34212 -15.08898 -14.78242 -14.47426 -14.42903 -14.26936 -13.81830 -13.52151 -13.36963 -13.20967 -13.07101 -12.91964 -12.85014 -12.66649 -12.55705 -12.42407 -12.32865 -12.08200 -11.87794 -11.66612 -11.52434 -11.33241 -10.96986 -10.67254 -9.91225 -9.60518 -9.35952 -8.95328 -8.33193 -7.06559 0.28258 0.50801 1.38232 1.41256 1.54023 2.21332 2.21732 2.28852 2.68072 2.88824 2.93652 3.71081 3.76562 3.89230 3.92004 3.96599 3.97944 4.11038 4.15039 4.18005 4.21954 4.30639 4.33791 4.43725 4.53778 4.56767 4.60194 4.67549 4.71223 4.71801 4.79163 4.87874 4.92330 4.93583 5.00297 5.11922 5.21621 5.25439 5.38132 5.48845 5.77711 5.84617 5.95127 5.96201 5.99356 6.15103 6.59652 6.70524 6.82260 8.26729 8.50493 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.017524 B = 0.002758 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.382985 B =10151.278169 C =10353.572034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.080 3.920 3 H 0.074 0.926 4 C 0.065 3.935 5 N -0.552 5.552 6 C 0.018 3.982 7 C 0.060 3.940 8 O -0.403 6.403 9 C 0.058 3.942 10 C 0.024 3.976 11 O -0.301 6.301 12 C 0.142 3.858 13 C -0.212 4.212 14 C -0.053 4.053 15 C -0.184 4.184 16 C 0.365 3.635 17 O -0.602 6.602 18 C -0.544 4.544 19 H 0.096 0.904 20 C 0.021 3.979 21 N -0.790 5.790 22 Si 0.997 3.003 23 H -0.250 1.250 24 H -0.271 1.271 25 H -0.250 1.250 26 C -0.066 4.066 27 C -0.166 4.166 28 H 0.069 0.931 29 H 0.096 0.904 30 H 0.057 0.943 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.053 0.947 34 H 0.085 0.915 35 H 0.112 0.888 36 H 0.046 0.954 37 H 0.049 0.951 38 H 0.117 0.883 39 H 0.049 0.951 40 H 0.096 0.904 41 H 0.156 0.844 42 H 0.136 0.864 43 H 0.282 0.718 44 H 0.109 0.891 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.472 -6.130 25.419 26.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.024 3.976 3 H 0.092 0.908 4 C -0.063 4.063 5 N -0.278 5.278 6 C -0.110 4.110 7 C -0.016 4.016 8 O -0.322 6.322 9 C -0.018 4.018 10 C -0.104 4.104 11 O -0.215 6.215 12 C 0.096 3.904 13 C -0.230 4.230 14 C -0.071 4.071 15 C -0.185 4.185 16 C 0.265 3.735 17 O -0.497 6.497 18 C -0.575 4.575 19 H 0.114 0.886 20 C -0.198 4.198 21 N -0.419 5.419 22 Si 0.815 3.185 23 H -0.173 1.173 24 H -0.195 1.195 25 H -0.174 1.174 26 C -0.085 4.085 27 C -0.185 4.185 28 H 0.089 0.911 29 H 0.114 0.886 30 H 0.076 0.924 31 H 0.109 0.891 32 H 0.097 0.903 33 H 0.071 0.929 34 H 0.103 0.897 35 H 0.130 0.870 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.135 0.865 39 H 0.067 0.933 40 H 0.114 0.886 41 H 0.173 0.827 42 H 0.154 0.846 43 H 0.092 0.908 44 H 0.127 0.873 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.836 -6.675 24.539 25.496 hybrid contribution -0.528 0.809 -0.189 0.984 sum -2.364 -5.866 24.350 25.158 Atomic orbital electron populations 1.22347 0.93473 1.03861 1.03833 1.22689 0.94654 0.96929 0.83370 0.90815 1.22245 0.86680 1.02449 0.94913 1.62076 1.09565 1.04158 1.51991 1.22826 0.96663 0.91422 1.00050 1.22729 0.92337 0.92020 0.94564 1.87948 1.72676 1.16214 1.55367 1.22816 0.93343 0.84406 1.01269 1.22784 0.95913 0.96492 0.95209 1.86066 1.80925 1.38136 1.16364 1.19111 0.94237 0.90344 0.86687 1.21385 1.07694 0.94078 0.99882 1.21364 0.94772 0.99972 0.90993 1.21416 1.03328 0.95871 0.97910 1.18814 0.80068 0.88902 0.85668 1.90438 1.47296 1.74616 1.37374 1.21426 1.38258 0.98652 0.99133 0.88578 1.27330 0.92706 1.05761 0.93966 1.70113 1.30294 1.39300 1.02177 0.85086 0.80075 0.74518 0.78850 1.17337 1.19532 1.17359 1.21087 0.96662 0.93473 0.97272 1.20364 1.05723 1.01333 0.91059 0.91145 0.88577 0.92418 0.89089 0.90251 0.92934 0.89708 0.86960 0.93579 0.93218 0.86474 0.93269 0.88558 0.82659 0.84609 0.90787 0.87278 0.84252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.70 9.16 71.98 0.66 -2.04 16 2 C 0.08 1.50 2.30 30.59 0.07 1.57 16 3 H 0.07 1.39 4.95 -2.39 -0.01 1.38 16 4 C 0.06 0.95 4.67 86.30 0.40 1.36 16 5 N -0.55 -9.92 4.58 -895.18 -4.10 -14.02 16 6 C 0.02 0.31 5.47 86.31 0.47 0.78 16 7 C 0.06 1.12 7.01 72.02 0.50 1.63 16 8 O -0.40 -8.27 10.83 -148.98 -1.61 -9.88 16 9 C 0.06 0.95 7.01 72.01 0.50 1.45 16 10 C 0.02 0.35 5.60 86.31 0.48 0.83 16 11 O -0.30 -8.17 9.71 -89.83 -0.87 -9.04 16 12 C 0.14 4.65 6.62 22.71 0.15 4.80 16 13 C -0.21 -6.77 8.21 22.34 0.18 -6.59 16 14 C -0.05 -2.11 9.43 22.53 0.21 -1.90 16 15 C -0.18 -9.12 5.89 -19.98 -0.12 -9.23 16 16 C 0.36 22.08 6.91 25.60 0.18 22.26 16 17 O -0.60 -41.61 14.89 -4.76 -0.07 -41.68 16 18 C -0.54 -30.81 8.86 23.65 0.21 -30.60 16 19 H 0.10 4.76 6.01 -2.91 -0.02 4.74 16 20 C 0.02 1.15 5.50 85.40 0.47 1.62 16 21 N -0.79 -47.69 11.73 21.89 0.26 -47.43 16 22 Si 1.00 39.30 29.56 68.60 2.03 41.33 16 23 H -0.25 -9.19 7.11 99.48 0.71 -8.48 16 24 H -0.27 -10.25 7.11 99.48 0.71 -9.55 16 25 H -0.25 -9.20 7.11 99.48 0.71 -8.49 16 26 C -0.07 -3.02 9.59 22.53 0.22 -2.80 16 27 C -0.17 -6.15 9.97 22.34 0.22 -5.93 16 28 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.06 1.07 6.90 -2.39 -0.02 1.05 16 31 H 0.09 1.27 7.86 -2.38 -0.02 1.25 16 32 H 0.08 0.83 7.99 -2.39 -0.02 0.81 16 33 H 0.05 0.77 8.13 -2.39 -0.02 0.75 16 34 H 0.08 1.44 6.76 -2.39 -0.02 1.43 16 35 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 38 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.10 1.22 8.02 -2.39 -0.02 1.20 16 41 H 0.16 3.76 5.40 -2.91 -0.02 3.74 16 42 H 0.14 5.13 6.19 -2.91 -0.02 5.11 16 43 H 0.28 15.19 8.29 -92.71 -0.77 14.43 16 44 H 0.11 5.27 7.65 -2.91 -0.02 5.25 16 45 H 0.14 4.52 8.06 -2.91 -0.02 4.49 16 Total: -1.00 -78.38 364.03 1.45 -76.93 By element: Atomic # 1 Polarization: 25.57 SS G_CDS: 1.00 Total: 26.57 kcal Atomic # 6 Polarization: -27.61 SS G_CDS: 4.82 Total: -22.79 kcal Atomic # 7 Polarization: -57.60 SS G_CDS: -3.85 Total: -61.45 kcal Atomic # 8 Polarization: -58.04 SS G_CDS: -2.56 Total: -60.60 kcal Atomic # 14 Polarization: 39.30 SS G_CDS: 2.03 Total: 41.33 kcal Total: -78.38 1.45 -76.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233525511.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.948 kcal (2) G-P(sol) polarization free energy of solvation -78.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds