Wall clock time and date at job start Sat Apr 11 2020 00:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34232 * 117.00044 * 2 1 4 4 O 1.20825 * 120.00357 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00066 * 179.97438 * 3 2 1 6 6 H 1.08999 * 109.47072 * 60.00017 * 5 3 2 7 7 C 1.52999 * 109.47343 * 299.99995 * 5 3 2 8 8 C 1.50701 * 109.47332 * 179.97438 * 5 3 2 9 9 C 1.38166 * 120.02631 * 60.32009 * 8 5 3 10 10 C 1.38250 * 120.05240 * 180.29734 * 9 8 5 11 11 C 1.38286 * 120.11189 * 359.68294 * 10 9 8 12 12 C 1.38125 * 120.05567 * 359.97438 * 11 10 9 13 13 C 1.38712 * 120.02777 * 240.00010 * 8 5 3 14 14 O 1.35902 * 120.05450 * 0.02562 * 13 8 5 15 15 C 1.42910 * 116.99764 * 184.72346 * 14 13 8 16 16 H 1.08998 * 110.91386 * 37.98512 * 15 14 13 17 17 C 1.55157 * 111.00389 * 161.89046 * 15 14 13 18 18 C 1.54331 * 103.01979 * 153.37753 * 17 15 14 19 19 N 1.47022 * 107.26693 * 338.14263 * 18 17 15 20 20 C 1.36938 * 125.65012 * 178.85138 * 19 18 17 21 21 H 1.07992 * 120.00223 * 185.75987 * 20 19 18 22 22 C 1.38811 * 119.99493 * 5.48091 * 20 19 18 23 23 N 1.31620 * 120.00277 * 353.46714 * 22 20 19 24 24 Si 1.86805 * 119.99883 * 173.46943 * 22 20 19 25 25 H 1.48499 * 109.47106 * 94.98113 * 24 22 20 26 26 H 1.48496 * 109.47272 * 214.98344 * 24 22 20 27 27 H 1.48506 * 109.46787 * 334.98465 * 24 22 20 28 28 C 1.47422 * 108.70224 * 358.58110 * 19 18 17 29 29 H 1.08996 * 109.47220 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46824 * 300.00550 * 1 2 3 31 31 H 1.08994 * 109.47170 * 59.99922 * 1 2 3 32 32 H 1.08999 * 109.47055 * 300.00033 * 7 5 3 33 33 H 1.09002 * 109.47372 * 59.99576 * 7 5 3 34 34 H 1.09001 * 109.47513 * 179.97438 * 7 5 3 35 35 H 1.07998 * 119.97487 * 0.02562 * 9 8 5 36 36 H 1.07993 * 119.94028 * 179.70261 * 10 9 8 37 37 H 1.08000 * 119.97589 * 180.02562 * 11 10 9 38 38 H 1.08001 * 120.03147 * 180.02562 * 12 11 10 39 39 H 1.08997 * 110.71581 * 271.93849 * 17 15 14 40 40 H 1.09006 * 110.71629 * 35.03143 * 17 15 14 41 41 H 1.09000 * 109.98945 * 218.66278 * 18 17 15 42 42 H 1.09005 * 109.77749 * 97.49370 * 18 17 15 43 43 H 0.97002 * 119.99584 * 179.97438 * 23 22 20 44 44 H 1.09005 * 110.36645 * 143.20019 * 28 19 18 45 45 H 1.09003 * 110.36980 * 265.40921 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9564 0.7806 -0.8891 7 6 4.1129 0.5816 1.2502 8 6 3.9936 2.7200 -0.0002 9 6 3.6212 3.5517 1.0384 10 6 4.0078 4.8790 1.0352 11 6 4.7733 5.3762 -0.0036 12 6 5.1541 4.5471 -1.0407 13 6 4.7667 3.2147 -1.0402 14 8 5.1393 2.3972 -2.0599 15 6 6.0201 2.9458 -3.0426 16 1 6.7584 3.6013 -2.5807 17 6 6.7087 1.8221 -3.8615 18 6 7.0157 2.5113 -5.2078 19 7 6.1035 3.6580 -5.3291 20 6 6.0697 4.5440 -6.3726 21 1 5.4249 5.4090 -6.3258 22 6 6.8686 4.3334 -7.4880 23 7 7.7511 3.3569 -7.4905 24 14 6.6913 5.4359 -8.9856 25 1 7.6915 6.5312 -8.9150 26 1 6.9172 4.6378 -10.2173 27 1 5.3242 6.0151 -9.0147 28 6 5.2269 3.6920 -4.1443 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 3.7228 1.0759 2.1399 33 1 3.8038 -0.4637 1.2503 34 1 5.2014 0.6382 1.2504 35 1 3.0240 3.1656 1.8512 36 1 3.7117 5.5286 1.8455 37 1 5.0744 6.4133 -0.0037 38 1 5.7523 4.9357 -1.8516 39 1 7.6275 1.4972 -3.3735 40 1 6.0317 0.9801 -4.0059 41 1 6.8476 1.8153 -6.0296 42 1 8.0493 2.8573 -5.2177 43 1 8.3091 3.2095 -8.2702 44 1 5.0363 4.7221 -3.8428 45 1 4.2881 3.1785 -4.3520 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234822401.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:00:40 Heat of formation + Delta-G solvation = -69.681022 kcal Electronic energy + Delta-G solvation = -27197.746542 eV Core-core repulsion = 23374.660653 eV Total energy + Delta-G solvation = -3823.085889 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.92619 -39.95414 -38.00590 -36.55120 -36.06681 -34.44595 -32.33486 -30.11071 -29.71064 -28.98161 -27.86941 -27.35885 -24.91037 -24.60278 -22.76558 -22.17610 -20.46296 -20.29330 -19.89122 -18.00002 -17.60847 -17.04780 -16.86965 -16.43228 -15.79474 -15.31145 -15.08588 -14.69598 -14.44401 -14.11875 -13.96335 -13.63546 -13.55368 -13.47410 -12.83145 -12.72477 -12.44683 -12.38979 -12.19220 -12.07740 -11.96467 -11.81299 -11.57723 -11.16353 -10.98498 -10.94383 -10.87617 -10.72030 -10.38259 -10.35032 -10.23582 -10.07977 -9.91222 -9.71446 -8.79988 -8.63308 -8.00079 -6.90810 -5.78010 -3.11481 1.31913 1.55935 2.15186 2.64234 3.37741 3.39048 3.44325 3.47135 3.85260 4.42283 4.46770 4.63878 4.90050 4.92725 4.99835 5.00737 5.06268 5.12868 5.22445 5.26984 5.32593 5.38229 5.41463 5.51798 5.55933 5.58597 5.61270 5.69823 5.83196 5.92476 6.02406 6.15872 6.28147 6.31975 6.39470 6.41358 6.46312 6.55395 6.61114 6.65841 6.93303 7.47033 7.53374 7.64738 7.68747 7.76829 8.18333 9.15119 9.74984 10.39714 11.34160 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.016400 B = 0.003180 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.953456 B = 8804.283703 C = 9331.664630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.359 6.359 3 C 0.465 3.535 4 O -0.497 6.497 5 C -0.033 4.033 6 H 0.125 0.875 7 C -0.138 4.138 8 C -0.121 4.121 9 C -0.052 4.052 10 C -0.167 4.167 11 C -0.073 4.073 12 C -0.207 4.207 13 C 0.155 3.845 14 O -0.307 6.307 15 C 0.066 3.934 16 H 0.081 0.919 17 C -0.134 4.134 18 C 0.178 3.822 19 N -0.602 5.602 20 C -0.232 4.232 21 H 0.079 0.921 22 C -0.005 4.005 23 N -0.920 5.920 24 Si 0.912 3.088 25 H -0.289 1.289 26 H -0.289 1.289 27 H -0.280 1.280 28 C 0.119 3.881 29 H 0.100 0.900 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.123 0.877 38 H 0.136 0.864 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.052 0.948 42 H 0.048 0.952 43 H 0.253 0.747 44 H 0.043 0.957 45 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.097 -5.673 19.802 22.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.276 6.276 3 C 0.308 3.692 4 O -0.384 6.384 5 C -0.052 4.052 6 H 0.143 0.857 7 C -0.195 4.195 8 C -0.122 4.122 9 C -0.071 4.071 10 C -0.185 4.185 11 C -0.091 4.091 12 C -0.226 4.226 13 C 0.108 3.892 14 O -0.219 6.219 15 C 0.010 3.990 16 H 0.099 0.901 17 C -0.172 4.172 18 C 0.053 3.947 19 N -0.330 5.330 20 C -0.360 4.360 21 H 0.097 0.903 22 C -0.202 4.202 23 N -0.567 5.567 24 Si 0.742 3.258 25 H -0.216 1.216 26 H -0.215 1.215 27 H -0.206 1.206 28 C -0.008 4.008 29 H 0.118 0.882 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.138 0.862 36 H 0.138 0.862 37 H 0.141 0.859 38 H 0.154 0.846 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.064 0.936 44 H 0.061 0.939 45 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -8.275 -5.564 19.537 21.935 hybrid contribution -0.251 0.912 -0.987 1.367 sum -8.527 -4.653 18.551 20.940 Atomic orbital electron populations 1.23247 0.76575 1.03537 1.02523 1.86506 1.23217 1.33558 1.84280 1.23791 0.91972 0.81284 0.72200 1.90680 1.66964 1.36242 1.44479 1.19727 0.87047 0.95091 1.03348 0.85714 1.21785 1.02276 1.00480 0.94976 1.18517 1.03752 0.94398 0.95537 1.20650 0.96543 0.93269 0.96590 1.20922 1.02105 0.95512 0.99977 1.20972 0.95876 0.99283 0.92982 1.21408 1.06148 0.93119 1.01911 1.18768 0.93645 0.89443 0.87317 1.86042 1.62951 1.39461 1.33467 1.23860 0.90951 0.97246 0.86971 0.90110 1.23016 0.99268 0.97304 0.97651 1.21212 0.94403 0.88690 0.90349 1.44336 1.37956 1.31137 1.19584 1.19055 1.21305 1.02283 0.93344 0.90315 1.24826 0.98451 0.98639 0.98243 1.69954 1.24424 1.32825 1.29508 0.86102 0.77716 0.79381 0.82593 1.21593 1.21531 1.20559 1.21961 0.93753 0.97558 0.87553 0.88184 0.92064 0.91859 0.92168 0.91009 0.90650 0.86200 0.86183 0.85894 0.84646 0.91292 0.91139 0.92977 0.93340 0.93621 0.93912 0.95284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 101.05 1.07 1.37 16 2 O -0.36 -4.10 10.47 -39.26 -0.41 -4.51 16 3 C 0.47 6.15 7.13 36.00 0.26 6.40 16 4 O -0.50 -7.85 14.88 -18.75 -0.28 -8.13 16 5 C -0.03 -0.40 2.97 -92.92 -0.28 -0.68 16 6 H 0.13 1.58 6.99 -51.93 -0.36 1.22 16 7 C -0.14 -1.24 8.94 37.16 0.33 -0.91 16 8 C -0.12 -1.69 4.41 -104.47 -0.46 -2.15 16 9 C -0.05 -0.66 7.94 -39.60 -0.31 -0.98 16 10 C -0.17 -2.01 10.04 -39.56 -0.40 -2.41 16 11 C -0.07 -0.94 10.04 -39.61 -0.40 -1.33 16 12 C -0.21 -3.09 8.74 -39.43 -0.34 -3.43 16 13 C 0.15 2.41 6.61 -39.22 -0.26 2.15 16 14 O -0.31 -5.15 8.72 -19.43 -0.17 -5.32 16 15 C 0.07 1.20 2.82 -24.58 -0.07 1.13 16 16 H 0.08 1.41 6.57 -51.93 -0.34 1.07 16 17 C -0.13 -2.50 6.68 -24.89 -0.17 -2.66 16 18 C 0.18 4.26 5.38 -3.06 -0.02 4.24 16 19 N -0.60 -15.44 3.39 -170.07 -0.58 -16.02 16 20 C -0.23 -6.48 10.27 -15.06 -0.15 -6.63 16 21 H 0.08 2.13 7.84 -52.49 -0.41 1.72 16 22 C -0.01 -0.14 5.48 -17.43 -0.10 -0.24 16 23 N -0.92 -26.69 10.36 55.49 0.57 -26.12 16 24 Si 0.91 22.01 29.56 -169.99 -5.02 16.98 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 27 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 28 C 0.12 2.54 6.62 -2.53 -0.02 2.52 16 29 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 31 H 0.06 0.58 8.13 -51.93 -0.42 0.15 16 32 H 0.06 0.49 7.37 -51.93 -0.38 0.11 16 33 H 0.07 0.56 8.11 -51.93 -0.42 0.14 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.12 1.33 7.52 -52.49 -0.39 0.94 16 36 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 37 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 38 H 0.14 2.08 5.35 -52.49 -0.28 1.80 16 39 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 40 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.05 1.37 7.39 -51.93 -0.38 0.99 16 42 H 0.05 1.26 7.52 -51.93 -0.39 0.86 16 43 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 44 H 0.04 0.89 7.31 -51.93 -0.38 0.51 16 45 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 366.70 15.07 5.53 5.53 Total: -1.00 -32.10 366.70 -8.36 -40.47 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -6.69 Total: 0.74 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: -1.31 Total: -3.61 kcal Atomic # 7 Polarization: -42.13 SS G_CDS: 0.00 Total: -42.14 kcal Atomic # 8 Polarization: -17.11 SS G_CDS: -0.86 Total: -17.97 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.10 -8.36 -40.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234822401.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.215 kcal (2) G-P(sol) polarization free energy of solvation -32.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds