Wall clock time and date at job start Sat Apr 11 2020 00:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34225 * 117.00345 * 2 1 4 4 O 1.20825 * 119.99973 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99990 * 180.02562 * 3 2 1 6 6 H 1.09007 * 109.46847 * 299.99600 * 5 3 2 7 7 C 1.52998 * 109.47091 * 59.99580 * 5 3 2 8 8 C 1.50697 * 109.46952 * 179.97438 * 5 3 2 9 9 C 1.38165 * 120.02930 * 299.97118 * 8 5 3 10 10 C 1.38239 * 120.05780 * 180.02562 * 9 8 5 11 11 C 1.38298 * 120.11158 * 359.97438 * 10 9 8 12 12 C 1.38118 * 120.05157 * 359.76896 * 11 10 9 13 13 C 1.38709 * 120.02632 * 120.00175 * 8 5 3 14 14 O 1.35895 * 120.05814 * 359.97438 * 13 8 5 15 15 C 1.42901 * 117.00111 * 185.58610 * 14 13 8 16 16 H 1.09002 * 110.88491 * 38.42618 * 15 14 13 17 17 C 1.55168 * 111.00345 * 162.34670 * 15 14 13 18 18 C 1.54339 * 103.01673 * 153.38266 * 17 15 14 19 19 N 1.47014 * 107.26686 * 338.14136 * 18 17 15 20 20 C 1.36942 * 125.64579 * 178.85528 * 19 18 17 21 21 H 1.08006 * 119.99596 * 179.69333 * 20 19 18 22 22 C 1.38808 * 119.99991 * 359.68498 * 20 19 18 23 23 N 1.31618 * 119.99964 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99855 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47094 * 180.02562 * 24 22 20 26 26 H 1.48500 * 109.47216 * 300.00208 * 24 22 20 27 27 H 1.48499 * 109.47024 * 60.00183 * 24 22 20 28 28 C 1.47420 * 108.70637 * 358.58283 * 19 18 17 29 29 H 1.09009 * 109.46787 * 299.99894 * 1 2 3 30 30 H 1.08997 * 109.46999 * 59.99425 * 1 2 3 31 31 H 1.08996 * 109.47831 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47658 * 299.99911 * 7 5 3 33 33 H 1.08999 * 109.47183 * 60.00638 * 7 5 3 34 34 H 1.09005 * 109.47052 * 180.02562 * 7 5 3 35 35 H 1.08002 * 119.97134 * 0.05036 * 9 8 5 36 36 H 1.07997 * 119.94810 * 180.02562 * 10 9 8 37 37 H 1.07997 * 119.96842 * 180.02562 * 11 10 9 38 38 H 1.07998 * 120.02861 * 180.27770 * 12 11 10 39 39 H 1.09003 * 110.71790 * 271.94044 * 17 15 14 40 40 H 1.08997 * 110.71796 * 35.03756 * 17 15 14 41 41 H 1.09000 * 109.98693 * 218.66090 * 18 17 15 42 42 H 1.08994 * 109.77786 * 97.49934 * 18 17 15 43 43 H 0.96998 * 120.00000 * 179.97438 * 23 22 20 44 44 H 1.09003 * 110.37010 * 143.19664 * 28 19 18 45 45 H 1.08997 * 110.37188 * 265.41129 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2747 -0.0006 6 1 3.9564 0.7804 0.8892 7 6 4.1129 0.5813 -1.2501 8 6 3.9937 2.7198 -0.0011 9 6 3.6163 3.5521 -1.0374 10 6 4.0084 4.8777 -1.0387 11 6 4.7787 5.3744 -0.0031 12 6 5.1541 4.5478 1.0378 13 6 4.7668 3.2154 1.0385 14 8 5.1393 2.3988 2.0589 15 6 5.8292 3.0032 3.1547 16 1 5.4147 3.9857 3.3805 17 6 5.7991 2.0852 4.4053 18 6 7.0710 2.5024 5.1735 19 7 7.9797 3.1315 4.2041 20 6 9.2103 3.6599 4.4902 21 1 9.8063 4.0975 3.7029 22 6 9.6915 3.6330 5.7919 23 7 8.9653 3.0994 6.7511 24 14 11.3699 4.3544 6.1822 25 1 11.6492 4.2016 7.6327 26 1 12.4101 3.6391 5.4002 27 1 11.3848 5.7954 5.8238 28 6 7.3496 3.0936 2.8719 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 3.8038 -0.4640 -1.2502 33 1 3.7229 1.0756 -2.1399 34 1 5.2014 0.6378 -1.2503 35 1 3.0141 3.1667 -1.8469 36 1 3.7121 5.5267 -1.8494 37 1 5.0834 6.4105 -0.0062 38 1 5.7518 4.9372 1.8487 39 1 4.9063 2.2744 5.0012 40 1 5.8519 1.0359 4.1147 41 1 7.5463 1.6248 5.6118 42 1 6.8120 3.2157 5.9559 43 1 9.3018 3.0803 7.6607 44 1 7.5788 4.0038 2.3177 45 1 7.6867 2.2178 2.3175 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234822410.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:00:44 Heat of formation + Delta-G solvation = -69.680728 kcal Electronic energy + Delta-G solvation = -27153.849154 eV Core-core repulsion = 23330.763278 eV Total energy + Delta-G solvation = -3823.085876 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.94524 -39.96296 -38.00690 -36.57736 -36.06781 -34.44460 -32.33303 -30.11013 -29.70632 -28.98069 -27.89428 -27.35800 -24.90440 -24.60550 -22.77053 -22.17858 -20.47240 -20.29304 -19.89583 -17.99099 -17.61209 -17.05944 -16.89057 -16.47161 -15.80193 -15.26283 -15.10220 -14.71235 -14.53122 -14.07700 -13.82415 -13.75653 -13.56913 -13.47241 -12.82058 -12.72505 -12.43227 -12.33064 -12.24160 -12.12738 -11.98746 -11.84853 -11.48767 -11.17063 -10.99619 -10.96833 -10.86893 -10.72207 -10.37945 -10.35925 -10.25039 -10.09908 -9.89333 -9.72170 -8.79767 -8.65530 -7.99743 -6.91659 -5.76768 -3.11563 1.32184 1.56329 2.12029 2.61886 3.37579 3.39434 3.43245 3.45483 3.85865 4.42582 4.46306 4.63546 4.89120 4.90759 4.96620 5.00851 5.06650 5.12270 5.22820 5.26702 5.31624 5.37653 5.42217 5.51798 5.58124 5.59427 5.61679 5.70565 5.84220 5.94966 6.02403 6.16340 6.25550 6.32316 6.39892 6.41523 6.46279 6.55094 6.61170 6.64636 6.93478 7.48096 7.52123 7.63293 7.67251 7.76735 8.18406 9.15158 9.74894 10.39213 11.34925 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.019795 B = 0.003067 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.192550 B = 9127.872515 C = 9949.819452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.358 6.358 3 C 0.466 3.534 4 O -0.499 6.499 5 C -0.033 4.033 6 H 0.125 0.875 7 C -0.139 4.139 8 C -0.121 4.121 9 C -0.052 4.052 10 C -0.167 4.167 11 C -0.073 4.073 12 C -0.207 4.207 13 C 0.155 3.845 14 O -0.307 6.307 15 C 0.066 3.934 16 H 0.080 0.920 17 C -0.135 4.135 18 C 0.179 3.821 19 N -0.602 5.602 20 C -0.232 4.232 21 H 0.079 0.921 22 C -0.006 4.006 23 N -0.922 5.922 24 Si 0.914 3.086 25 H -0.289 1.289 26 H -0.284 1.284 27 H -0.284 1.284 28 C 0.119 3.881 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.100 0.900 32 H 0.071 0.929 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.123 0.877 38 H 0.136 0.864 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.049 0.951 42 H 0.052 0.948 43 H 0.254 0.746 44 H 0.043 0.957 45 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.859 -3.877 -15.677 21.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.275 6.275 3 C 0.308 3.692 4 O -0.385 6.385 5 C -0.052 4.052 6 H 0.143 0.857 7 C -0.196 4.196 8 C -0.122 4.122 9 C -0.070 4.070 10 C -0.185 4.185 11 C -0.091 4.091 12 C -0.226 4.226 13 C 0.108 3.892 14 O -0.220 6.220 15 C 0.010 3.990 16 H 0.098 0.902 17 C -0.173 4.173 18 C 0.054 3.946 19 N -0.330 5.330 20 C -0.360 4.360 21 H 0.096 0.904 22 C -0.203 4.203 23 N -0.569 5.569 24 Si 0.745 3.255 25 H -0.215 1.215 26 H -0.211 1.211 27 H -0.211 1.211 28 C -0.008 4.008 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.118 0.882 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.138 0.862 36 H 0.138 0.862 37 H 0.141 0.859 38 H 0.154 0.846 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.064 0.936 44 H 0.061 0.939 45 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -14.985 -3.770 -15.432 21.839 hybrid contribution 0.692 0.709 0.407 1.071 sum -14.294 -3.062 -15.025 20.963 Atomic orbital electron populations 1.23247 0.76609 1.03550 1.02480 1.86513 1.23185 1.33569 1.84247 1.23820 0.91994 0.81252 0.72111 1.90673 1.66989 1.36261 1.44620 1.19736 0.86916 0.95117 1.03436 0.85697 1.21792 1.02457 1.00438 0.94902 1.18510 1.03299 0.94413 0.95995 1.20644 0.96595 0.93260 0.96539 1.20923 1.02029 0.95565 1.00010 1.20975 0.95811 0.99333 0.92992 1.21419 1.05968 0.93285 1.01902 1.18763 0.93086 0.89459 0.87859 1.86034 1.71273 1.36418 1.28226 1.23864 0.93158 0.97195 0.84813 0.90197 1.23026 1.00922 0.99190 0.94163 1.21203 0.85176 0.97551 0.90646 1.44330 1.17519 1.69430 1.01718 1.19011 0.91654 1.31794 0.93504 0.90350 1.24815 0.98815 1.00949 0.95677 1.69929 1.37050 1.49479 1.00471 0.86165 0.83413 0.78831 0.77139 1.21525 1.21086 1.21098 1.21967 0.89713 0.99083 0.90002 0.91930 0.92044 0.88171 0.91014 0.92174 0.90510 0.86208 0.86186 0.85892 0.84625 0.91384 0.91130 0.93236 0.93030 0.93555 0.93858 0.95240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 101.05 1.07 1.35 16 2 O -0.36 -3.97 10.47 -39.25 -0.41 -4.38 16 3 C 0.47 5.98 7.12 36.00 0.26 6.23 16 4 O -0.50 -7.61 14.86 -18.75 -0.28 -7.88 16 5 C -0.03 -0.40 2.97 -92.93 -0.28 -0.68 16 6 H 0.13 1.58 7.00 -51.93 -0.36 1.22 16 7 C -0.14 -1.30 8.94 37.16 0.33 -0.97 16 8 C -0.12 -1.69 4.41 -104.48 -0.46 -2.15 16 9 C -0.05 -0.66 7.93 -39.61 -0.31 -0.98 16 10 C -0.17 -2.02 10.04 -39.56 -0.40 -2.42 16 11 C -0.07 -0.94 10.04 -39.60 -0.40 -1.34 16 12 C -0.21 -3.10 8.72 -39.43 -0.34 -3.44 16 13 C 0.15 2.42 6.61 -39.21 -0.26 2.16 16 14 O -0.31 -5.16 8.72 -19.41 -0.17 -5.33 16 15 C 0.07 1.21 2.82 -24.58 -0.07 1.14 16 16 H 0.08 1.44 6.61 -51.93 -0.34 1.09 16 17 C -0.13 -2.54 6.68 -24.88 -0.17 -2.71 16 18 C 0.18 4.28 5.37 -3.06 -0.02 4.26 16 19 N -0.60 -15.28 3.39 -170.07 -0.58 -15.86 16 20 C -0.23 -6.40 10.28 -15.06 -0.15 -6.56 16 21 H 0.08 2.08 7.83 -52.48 -0.41 1.67 16 22 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 23 N -0.92 -26.70 10.31 55.49 0.57 -26.13 16 24 Si 0.91 21.88 29.55 -169.99 -5.02 16.85 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 26 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 27 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 28 C 0.12 2.49 6.60 -2.53 -0.02 2.47 16 29 H 0.06 0.53 8.13 -51.92 -0.42 0.10 16 30 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 31 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.58 8.11 -51.93 -0.42 0.16 16 33 H 0.06 0.51 7.39 -51.93 -0.38 0.13 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.12 1.34 7.51 -52.49 -0.39 0.94 16 36 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 37 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 38 H 0.14 2.09 5.31 -52.49 -0.28 1.81 16 39 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.05 1.30 7.52 -51.93 -0.39 0.91 16 42 H 0.05 1.35 7.37 -51.93 -0.38 0.96 16 43 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 44 H 0.04 0.88 7.24 -51.93 -0.38 0.50 16 45 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 366.51 15.07 5.52 5.52 Total: -1.00 -31.75 366.51 -8.36 -40.11 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -6.68 Total: 0.98 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: -1.31 Total: -3.89 kcal Atomic # 7 Polarization: -41.98 SS G_CDS: 0.00 Total: -41.99 kcal Atomic # 8 Polarization: -16.74 SS G_CDS: -0.86 Total: -17.60 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.75 -8.36 -40.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234822410.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.568 kcal (2) G-P(sol) polarization free energy of solvation -31.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds