Wall clock time and date at job start Sat Apr 11 2020 00:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34225 * 117.00345 * 2 1 4 4 O 1.20825 * 119.99973 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99990 * 180.02562 * 3 2 1 6 6 H 1.09007 * 109.46847 * 299.99600 * 5 3 2 7 7 C 1.52998 * 109.47091 * 59.99580 * 5 3 2 8 8 C 1.50697 * 109.46952 * 179.97438 * 5 3 2 9 9 C 1.38165 * 120.02930 * 299.97118 * 8 5 3 10 10 C 1.38239 * 120.05780 * 180.02562 * 9 8 5 11 11 C 1.38298 * 120.11158 * 359.97438 * 10 9 8 12 12 C 1.38118 * 120.05157 * 359.76896 * 11 10 9 13 13 C 1.38709 * 120.02632 * 120.00175 * 8 5 3 14 14 O 1.35895 * 120.05814 * 359.97438 * 13 8 5 15 15 C 1.42901 * 117.00111 * 185.58610 * 14 13 8 16 16 H 1.09002 * 110.88491 * 38.42618 * 15 14 13 17 17 C 1.55168 * 111.00345 * 162.34670 * 15 14 13 18 18 C 1.54339 * 103.01673 * 153.38266 * 17 15 14 19 19 N 1.47014 * 107.26686 * 338.14136 * 18 17 15 20 20 C 1.36942 * 125.64579 * 178.85528 * 19 18 17 21 21 H 1.08006 * 119.99596 * 179.69333 * 20 19 18 22 22 C 1.38808 * 119.99991 * 359.68498 * 20 19 18 23 23 N 1.31618 * 119.99964 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99855 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47094 * 180.02562 * 24 22 20 26 26 H 1.48500 * 109.47216 * 300.00208 * 24 22 20 27 27 H 1.48499 * 109.47024 * 60.00183 * 24 22 20 28 28 C 1.47420 * 108.70637 * 358.58283 * 19 18 17 29 29 H 1.09009 * 109.46787 * 299.99894 * 1 2 3 30 30 H 1.08997 * 109.46999 * 59.99425 * 1 2 3 31 31 H 1.08996 * 109.47831 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47658 * 299.99911 * 7 5 3 33 33 H 1.08999 * 109.47183 * 60.00638 * 7 5 3 34 34 H 1.09005 * 109.47052 * 180.02562 * 7 5 3 35 35 H 1.08002 * 119.97134 * 0.05036 * 9 8 5 36 36 H 1.07997 * 119.94810 * 180.02562 * 10 9 8 37 37 H 1.07997 * 119.96842 * 180.02562 * 11 10 9 38 38 H 1.07998 * 120.02861 * 180.27770 * 12 11 10 39 39 H 1.09003 * 110.71790 * 271.94044 * 17 15 14 40 40 H 1.08997 * 110.71796 * 35.03756 * 17 15 14 41 41 H 1.09000 * 109.98693 * 218.66090 * 18 17 15 42 42 H 1.08994 * 109.77786 * 97.49934 * 18 17 15 43 43 H 0.96998 * 120.00000 * 179.97438 * 23 22 20 44 44 H 1.09003 * 110.37010 * 143.19664 * 28 19 18 45 45 H 1.08997 * 110.37188 * 265.41129 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2747 -0.0006 6 1 3.9564 0.7804 0.8892 7 6 4.1129 0.5813 -1.2501 8 6 3.9937 2.7198 -0.0011 9 6 3.6163 3.5521 -1.0374 10 6 4.0084 4.8777 -1.0387 11 6 4.7787 5.3744 -0.0031 12 6 5.1541 4.5478 1.0378 13 6 4.7668 3.2154 1.0385 14 8 5.1393 2.3988 2.0589 15 6 5.8292 3.0032 3.1547 16 1 5.4147 3.9857 3.3805 17 6 5.7991 2.0852 4.4053 18 6 7.0710 2.5024 5.1735 19 7 7.9797 3.1315 4.2041 20 6 9.2103 3.6599 4.4902 21 1 9.8063 4.0975 3.7029 22 6 9.6915 3.6330 5.7919 23 7 8.9653 3.0994 6.7511 24 14 11.3699 4.3544 6.1822 25 1 11.6492 4.2016 7.6327 26 1 12.4101 3.6391 5.4002 27 1 11.3848 5.7954 5.8238 28 6 7.3496 3.0936 2.8719 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 3.8038 -0.4640 -1.2502 33 1 3.7229 1.0756 -2.1399 34 1 5.2014 0.6378 -1.2503 35 1 3.0141 3.1667 -1.8469 36 1 3.7121 5.5267 -1.8494 37 1 5.0834 6.4105 -0.0062 38 1 5.7518 4.9372 1.8487 39 1 4.9063 2.2744 5.0012 40 1 5.8519 1.0359 4.1147 41 1 7.5463 1.6248 5.6118 42 1 6.8120 3.2157 5.9559 43 1 9.3018 3.0803 7.6607 44 1 7.5788 4.0038 2.3177 45 1 7.6867 2.2178 2.3175 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234822410.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:00:43 Heat of formation + Delta-G solvation = -86.620014 kcal Electronic energy + Delta-G solvation = -27154.583697 eV Core-core repulsion = 23330.763278 eV Total energy + Delta-G solvation = -3823.820419 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.95887 -41.10578 -39.34647 -37.73599 -37.40966 -35.39448 -34.28829 -31.46634 -30.98145 -30.33433 -29.05588 -28.56329 -26.53682 -25.76335 -23.94399 -23.27008 -22.10761 -21.71159 -21.12247 -19.20077 -18.99547 -18.56680 -17.81952 -17.43829 -16.99634 -16.68168 -16.55894 -16.24316 -15.74183 -15.54058 -15.10637 -14.80777 -14.69113 -14.38183 -14.25732 -13.99687 -13.93097 -13.65142 -13.45930 -13.18770 -12.96513 -12.90785 -12.84012 -12.76879 -12.61804 -12.20530 -12.10311 -12.07585 -11.94857 -11.85946 -11.77756 -11.50633 -11.46898 -11.33958 -10.73303 -9.82582 -9.13137 -8.96431 -7.88275 -5.25720 0.30391 0.49245 1.14991 1.46235 1.49506 1.55824 1.77503 2.08456 2.49427 2.83286 3.30730 3.47618 3.60071 3.65889 3.73317 3.91172 3.96888 4.02942 4.14342 4.17486 4.19734 4.31166 4.34152 4.37355 4.50188 4.52721 4.58845 4.70866 4.76633 4.80057 4.83951 4.92088 4.95420 5.01375 5.06676 5.21901 5.37207 5.39885 5.41320 5.48396 5.56749 5.58619 5.68629 5.87336 6.13613 6.42810 6.71345 7.05150 7.70135 8.33893 9.21953 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.019795 B = 0.003067 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.192550 B = 9127.872515 C = 9949.819452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.360 6.360 3 C 0.470 3.530 4 O -0.528 6.528 5 C -0.035 4.035 6 H 0.117 0.883 7 C -0.133 4.133 8 C -0.124 4.124 9 C -0.057 4.057 10 C -0.160 4.160 11 C -0.078 4.078 12 C -0.221 4.221 13 C 0.125 3.875 14 O -0.309 6.309 15 C 0.086 3.914 16 H 0.083 0.917 17 C -0.122 4.122 18 C 0.187 3.813 19 N -0.623 5.623 20 C -0.248 4.248 21 H 0.083 0.917 22 C -0.062 4.062 23 N -0.950 5.950 24 Si 0.981 3.019 25 H -0.293 1.293 26 H -0.277 1.277 27 H -0.276 1.276 28 C 0.120 3.880 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.132 0.868 32 H 0.085 0.915 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.137 0.863 36 H 0.150 0.850 37 H 0.145 0.855 38 H 0.124 0.876 39 H 0.090 0.910 40 H 0.081 0.919 41 H 0.017 0.983 42 H 0.022 0.978 43 H 0.249 0.751 44 H 0.048 0.952 45 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.774 -3.747 -17.879 24.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.276 6.276 3 C 0.314 3.686 4 O -0.417 6.417 5 C -0.054 4.054 6 H 0.135 0.865 7 C -0.190 4.190 8 C -0.125 4.125 9 C -0.075 4.075 10 C -0.178 4.178 11 C -0.096 4.096 12 C -0.240 4.240 13 C 0.079 3.921 14 O -0.222 6.222 15 C 0.029 3.971 16 H 0.101 0.899 17 C -0.160 4.160 18 C 0.062 3.938 19 N -0.351 5.351 20 C -0.377 4.377 21 H 0.101 0.899 22 C -0.255 4.255 23 N -0.598 5.598 24 Si 0.809 3.191 25 H -0.219 1.219 26 H -0.203 1.203 27 H -0.201 1.201 28 C -0.006 4.006 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.150 0.850 32 H 0.103 0.897 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.155 0.845 36 H 0.168 0.832 37 H 0.163 0.837 38 H 0.142 0.858 39 H 0.109 0.891 40 H 0.100 0.900 41 H 0.035 0.965 42 H 0.040 0.960 43 H 0.059 0.941 44 H 0.067 0.933 45 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -15.918 -3.655 -17.678 24.067 hybrid contribution 0.881 0.654 0.972 1.466 sum -15.037 -3.001 -16.706 22.676 Atomic orbital electron populations 1.23552 0.74862 1.05702 1.02440 1.86501 1.24894 1.32533 1.83690 1.23882 0.92127 0.81306 0.71298 1.90656 1.67611 1.37201 1.46194 1.19784 0.86802 0.94408 1.04437 0.86539 1.21786 1.02326 1.01046 0.93853 1.18768 1.02593 0.95534 0.95626 1.20936 0.96456 0.93540 0.96583 1.21319 1.00530 0.95707 1.00202 1.21268 0.95618 1.00213 0.92481 1.21467 1.06510 0.93502 1.02524 1.19013 0.94904 0.89871 0.88275 1.86002 1.71375 1.36504 1.28296 1.23447 0.91402 0.97147 0.85107 0.89940 1.22844 0.99067 0.99840 0.94227 1.20933 0.86900 0.95289 0.90649 1.44605 1.17452 1.69342 1.03663 1.19408 0.92799 1.31608 0.93877 0.89891 1.25673 1.02491 1.01735 0.95609 1.70145 1.38556 1.50679 1.00423 0.85119 0.79137 0.78370 0.76486 1.21889 1.20294 1.20140 1.22038 0.91474 0.99017 0.88050 0.92544 0.91566 0.84978 0.89654 0.91100 0.90540 0.84509 0.83183 0.83695 0.85769 0.89116 0.90050 0.96491 0.95969 0.94148 0.93344 0.95545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.56 113.37 1.20 1.59 16 2 O -0.36 -7.32 10.47 -51.37 -0.54 -7.86 16 3 C 0.47 11.40 7.12 71.24 0.51 11.91 16 4 O -0.53 -15.44 14.86 21.97 0.33 -15.11 16 5 C -0.04 -0.81 2.97 -12.29 -0.04 -0.85 16 6 H 0.12 2.87 7.00 -2.38 -0.02 2.86 16 7 C -0.13 -2.23 8.94 71.98 0.64 -1.58 16 8 C -0.12 -3.30 4.41 -19.77 -0.09 -3.39 16 9 C -0.06 -1.33 7.93 22.25 0.18 -1.15 16 10 C -0.16 -3.42 10.04 22.28 0.22 -3.19 16 11 C -0.08 -1.86 10.04 22.26 0.22 -1.63 16 12 C -0.22 -6.47 8.72 22.37 0.20 -6.27 16 13 C 0.12 3.81 6.61 22.51 0.15 3.96 16 14 O -0.31 -10.27 8.72 -92.37 -0.81 -11.07 16 15 C 0.09 3.13 2.82 31.99 0.09 3.23 16 16 H 0.08 2.97 6.61 -2.39 -0.02 2.95 16 17 C -0.12 -4.59 6.68 31.79 0.21 -4.38 16 18 C 0.19 9.27 5.37 86.74 0.47 9.74 16 19 N -0.62 -32.37 3.39 -691.98 -2.35 -34.72 16 20 C -0.25 -13.97 10.28 84.03 0.86 -13.11 16 21 H 0.08 4.45 7.83 -2.91 -0.02 4.43 16 22 C -0.06 -3.51 5.49 84.86 0.47 -3.04 16 23 N -0.95 -56.73 10.31 21.65 0.22 -56.51 16 24 Si 0.98 45.48 29.55 68.60 2.03 47.51 16 25 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 26 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 27 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 28 C 0.12 5.07 6.60 86.86 0.57 5.64 16 29 H 0.06 0.88 8.13 -2.38 -0.02 0.86 16 30 H 0.07 0.88 8.13 -2.39 -0.02 0.86 16 31 H 0.13 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.08 1.19 8.11 -2.39 -0.02 1.17 16 33 H 0.07 1.03 7.39 -2.39 -0.02 1.01 16 34 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 35 H 0.14 2.67 7.51 -2.91 -0.02 2.64 16 36 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 37 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16 38 H 0.12 3.84 5.31 -2.91 -0.02 3.82 16 39 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 40 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 41 H 0.02 0.93 7.52 -2.39 -0.02 0.91 16 42 H 0.02 1.21 7.37 -2.39 -0.02 1.19 16 43 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 44 H 0.05 1.98 7.24 -2.39 -0.02 1.96 16 45 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -69.62 366.51 5.73 -63.89 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: 0.98 Total: 16.39 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: 5.86 Total: -2.53 kcal Atomic # 7 Polarization: -89.10 SS G_CDS: -2.13 Total: -91.22 kcal Atomic # 8 Polarization: -33.02 SS G_CDS: -1.02 Total: -34.04 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -69.62 5.73 -63.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234822410.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.731 kcal (2) G-P(sol) polarization free energy of solvation -69.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds