Wall clock time and date at job start Sat Apr 11 2020 00:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.51074 * 2 1 4 4 C 1.53712 * 109.69769 * 239.87217 * 2 1 3 5 5 N 1.47154 * 108.16163 * 292.54732 * 4 2 1 6 6 C 1.34778 * 120.98557 * 129.43644 * 5 4 2 7 7 O 1.21280 * 120.00228 * 179.71844 * 6 5 4 8 8 C 1.50705 * 119.99581 * 359.71089 * 6 5 4 9 9 H 1.08993 * 109.46824 * 60.00672 * 8 6 5 10 10 C 1.50692 * 109.47530 * 300.00408 * 8 6 5 11 11 H 1.08009 * 119.99991 * 325.54476 * 10 8 6 12 12 C 1.37879 * 120.00161 * 145.26519 * 10 8 6 13 13 N 1.31518 * 119.99956 * 184.94214 * 12 10 8 14 14 Si 1.86801 * 119.99842 * 4.94676 * 12 10 8 15 15 H 1.48497 * 109.47314 * 84.55766 * 14 12 10 16 16 H 1.48501 * 109.47059 * 204.55996 * 14 12 10 17 17 H 1.48506 * 109.46939 * 324.55610 * 14 12 10 18 18 C 1.50707 * 109.46788 * 180.02562 * 8 6 5 19 19 C 1.38235 * 119.99581 * 65.11441 * 18 8 6 20 20 C 1.38239 * 119.99686 * 179.78644 * 19 18 8 21 21 C 1.38236 * 119.99920 * 0.46143 * 20 19 18 22 22 C 1.38239 * 119.99897 * 359.77380 * 21 20 19 23 23 C 1.38226 * 119.99972 * 245.38753 * 18 8 6 24 24 C 1.47155 * 118.03570 * 309.15578 * 5 4 2 25 25 C 1.53301 * 108.38080 * 50.78587 * 24 5 4 26 26 H 1.09000 * 109.51022 * 67.62616 * 25 24 5 27 27 C 1.53003 * 109.51228 * 187.72347 * 25 24 5 28 28 O 1.42895 * 109.47176 * 185.00158 * 27 25 24 29 29 O 1.42956 * 109.22488 * 307.69842 * 25 24 5 30 30 H 1.08999 * 109.47336 * 299.89718 * 1 2 3 31 31 H 1.09001 * 109.47368 * 59.89638 * 1 2 3 32 32 H 1.09002 * 109.46988 * 179.89650 * 1 2 3 33 33 H 1.08997 * 109.83874 * 172.86678 * 4 2 1 34 34 H 1.09000 * 109.75208 * 52.17138 * 4 2 1 35 35 H 0.97004 * 119.99823 * 179.97438 * 13 12 10 36 36 H 1.07999 * 120.00441 * 0.02562 * 19 18 8 37 37 H 1.08001 * 120.00229 * 180.25573 * 20 19 18 38 38 H 1.07992 * 119.99854 * 179.79211 * 21 20 19 39 39 H 1.07996 * 119.99622 * 179.97438 * 22 21 20 40 40 H 1.08001 * 120.00412 * 359.97438 * 23 18 8 41 41 H 1.08998 * 109.68420 * 170.51081 * 24 5 4 42 42 H 1.09005 * 109.67930 * 291.03033 * 24 5 4 43 43 H 1.09001 * 109.46794 * 305.00156 * 27 25 24 44 44 H 1.08997 * 109.46721 * 64.99890 * 27 25 24 45 45 H 0.96699 * 114.00081 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0481 -0.7264 -1.2517 5 7 1.6979 -2.1507 -1.1333 6 6 1.0745 -2.7978 -2.1379 7 8 0.7988 -3.9733 -2.0232 8 6 0.7199 -2.0606 -3.4035 9 1 1.6281 -1.6720 -3.8642 10 6 -0.2061 -0.9176 -3.0766 11 1 -0.9303 -1.0197 -2.2817 12 6 -0.1252 0.2606 -3.7882 13 7 -0.8649 1.2909 -3.4406 14 14 1.0351 0.3932 -5.2462 15 1 0.3668 -0.1394 -6.4607 16 1 1.3958 1.8172 -5.4638 17 1 2.2651 -0.3928 -4.9730 18 6 0.0353 -3.0036 -4.3591 19 6 -1.1965 -3.5413 -4.0359 20 6 -1.8265 -4.4029 -4.9144 21 6 -1.2204 -4.7342 -6.1118 22 6 0.0137 -4.2003 -6.4328 23 6 0.6416 -3.3353 -5.5562 24 6 2.0541 -2.8494 0.1119 25 6 1.5405 -2.0208 1.2950 26 1 0.4506 -2.0290 1.2993 27 6 2.0612 -2.6202 2.6029 28 8 1.4892 -1.9193 3.7090 29 8 2.0075 -0.6759 1.1657 30 1 -0.3634 0.5122 0.8909 31 1 -0.3634 0.5154 -0.8890 32 1 -0.3633 -1.0277 -0.0019 33 1 3.1306 -0.6190 -1.3202 34 1 1.5799 -0.3061 -2.1417 35 1 -0.8077 2.1199 -3.9410 36 1 -1.6685 -3.2853 -3.0988 37 1 -2.7908 -4.8198 -4.6638 38 1 -1.7111 -5.4099 -6.7965 39 1 0.4873 -4.4595 -7.3680 40 1 1.6059 -2.9184 -5.8069 41 1 1.5899 -3.8355 0.1252 42 1 3.1373 -2.9526 0.1779 43 1 1.7828 -3.6727 2.6564 44 1 3.1468 -2.5294 2.6373 45 1 1.7759 -2.2464 4.5727 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362678722.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:01:24 Heat of formation + Delta-G solvation = -95.274895 kcal Electronic energy + Delta-G solvation = -28640.812389 eV Core-core repulsion = 24816.616666 eV Total energy + Delta-G solvation = -3824.195723 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.14811 -38.76185 -37.59874 -36.54319 -34.28152 -33.73806 -32.19085 -31.58029 -30.16249 -29.35496 -27.99940 -26.13766 -25.26084 -23.44639 -22.33199 -21.88970 -21.02571 -19.67436 -18.43070 -17.38338 -17.23310 -16.58404 -16.39184 -16.04810 -15.39180 -15.01802 -14.56575 -14.51718 -14.31231 -14.21219 -13.83424 -13.64941 -13.23718 -12.97031 -12.88749 -12.66971 -12.46251 -12.29460 -12.01524 -11.85629 -11.52233 -11.22674 -11.08327 -11.01823 -10.86198 -10.74514 -10.50570 -10.27242 -10.16878 -9.99018 -9.91231 -9.65126 -9.46139 -9.06485 -8.66618 -8.16780 -7.93778 -7.84224 -6.40007 -4.40442 2.12179 2.18537 3.08072 3.16721 3.22593 3.40684 3.58925 3.97730 4.12929 4.26921 4.57934 4.90425 5.11366 5.15948 5.25435 5.32226 5.47849 5.50498 5.53658 5.56786 5.63910 5.72809 5.74202 5.83447 5.90852 6.00582 6.06236 6.22904 6.28085 6.28374 6.41225 6.43639 6.52841 6.67691 6.72271 6.81862 7.07870 7.09337 7.14726 7.22544 7.24010 7.54638 7.57330 7.65270 7.76157 8.02034 8.15937 8.60063 8.98330 9.15505 10.69038 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.014128 B = 0.005360 C = 0.004371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.378490 B = 5222.465495 C = 6403.981436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.081 3.919 3 H 0.105 0.895 4 C 0.067 3.933 5 N -0.605 5.605 6 C 0.540 3.460 7 O -0.561 6.561 8 C 0.018 3.982 9 H 0.072 0.928 10 C -0.506 4.506 11 H 0.090 0.910 12 C 0.086 3.914 13 N -0.875 5.875 14 Si 0.857 3.143 15 H -0.266 1.266 16 H -0.283 1.283 17 H -0.262 1.262 18 C -0.027 4.027 19 C -0.072 4.072 20 C -0.129 4.129 21 C -0.143 4.143 22 C -0.128 4.128 23 C -0.137 4.137 24 C 0.086 3.914 25 C 0.077 3.923 26 H 0.074 0.926 27 C 0.088 3.912 28 O -0.563 6.563 29 O -0.374 6.374 30 H 0.044 0.956 31 H 0.106 0.894 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.140 0.860 35 H 0.271 0.729 36 H 0.116 0.884 37 H 0.111 0.889 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.107 0.893 41 H 0.095 0.905 42 H 0.065 0.935 43 H 0.059 0.941 44 H 0.053 0.947 45 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.688 -5.258 5.036 9.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.024 3.976 3 H 0.123 0.877 4 C -0.056 4.056 5 N -0.339 5.339 6 C 0.331 3.669 7 O -0.440 6.440 8 C -0.004 4.004 9 H 0.090 0.910 10 C -0.544 4.544 11 H 0.108 0.892 12 C -0.119 4.119 13 N -0.510 5.510 14 Si 0.683 3.317 15 H -0.190 1.190 16 H -0.209 1.209 17 H -0.187 1.187 18 C -0.028 4.028 19 C -0.090 4.090 20 C -0.147 4.147 21 C -0.161 4.161 22 C -0.146 4.146 23 C -0.155 4.155 24 C -0.038 4.038 25 C 0.018 3.982 26 H 0.091 0.909 27 C 0.009 3.991 28 O -0.368 6.368 29 O -0.293 6.293 30 H 0.063 0.937 31 H 0.125 0.875 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.158 0.842 35 H 0.081 0.919 36 H 0.134 0.866 37 H 0.129 0.871 38 H 0.127 0.873 39 H 0.127 0.873 40 H 0.125 0.875 41 H 0.113 0.887 42 H 0.083 0.917 43 H 0.078 0.922 44 H 0.071 0.929 45 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 5.307 -5.236 4.684 8.804 hybrid contribution 0.714 -0.178 -0.620 0.962 sum 6.021 -5.414 4.064 9.060 Atomic orbital electron populations 1.22411 0.94617 1.02719 1.03711 1.22599 0.95358 0.95670 0.84003 0.87713 1.22975 0.99303 0.80695 1.02610 1.47858 1.59785 1.11103 1.15147 1.21176 0.74379 0.86246 0.85136 1.90584 1.54622 1.16773 1.81993 1.18618 0.98213 0.94337 0.89184 0.90982 1.20578 1.19277 0.94346 1.20155 0.89231 1.24927 0.95465 0.95353 0.96191 1.69816 1.39016 1.02762 1.39407 0.87163 0.82114 0.77611 0.84773 1.19045 1.20904 1.18685 1.20034 0.94630 0.93654 0.94517 1.20826 0.94459 0.95032 0.98692 1.21034 0.99578 0.99280 0.94805 1.20865 0.96193 1.01608 0.97417 1.20882 0.95971 0.98733 0.99055 1.20965 0.99673 0.99470 0.95371 1.21981 1.00052 0.97302 0.84424 1.22358 0.99581 0.83857 0.92444 0.90859 1.22097 0.97127 0.94250 0.85613 1.86578 1.72151 1.61733 1.16312 1.87959 1.72274 1.24522 1.44570 0.93676 0.87488 0.92799 0.92728 0.84224 0.91900 0.86563 0.87132 0.87324 0.87272 0.87472 0.88658 0.91656 0.92245 0.92877 0.77857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.38 7.77 37.16 0.29 -3.09 16 2 C 0.08 1.43 3.93 -26.36 -0.10 1.32 16 3 H 0.11 1.69 8.14 -51.93 -0.42 1.27 16 4 C 0.07 1.21 5.58 -3.32 -0.02 1.19 16 5 N -0.61 -11.46 2.53 -172.01 -0.44 -11.90 16 6 C 0.54 11.61 6.99 -10.98 -0.08 11.53 16 7 O -0.56 -13.09 14.85 5.56 0.08 -13.01 16 8 C 0.02 0.39 1.12 -94.07 -0.11 0.29 16 9 H 0.07 1.57 4.76 -51.93 -0.25 1.32 16 10 C -0.51 -11.87 4.75 -34.44 -0.16 -12.03 16 11 H 0.09 2.31 6.90 -52.48 -0.36 1.95 16 12 C 0.09 2.07 4.77 -17.82 -0.09 1.99 16 13 N -0.87 -22.35 13.80 55.43 0.77 -21.58 16 14 Si 0.86 18.75 27.03 -169.99 -4.59 14.16 16 15 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 16 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 17 H -0.26 -5.38 6.07 56.52 0.34 -5.04 16 18 C -0.03 -0.60 4.08 -104.62 -0.43 -1.02 16 19 C -0.07 -1.53 8.26 -39.58 -0.33 -1.86 16 20 C -0.13 -2.39 10.05 -39.58 -0.40 -2.79 16 21 C -0.14 -2.46 10.05 -39.58 -0.40 -2.86 16 22 C -0.13 -2.28 10.05 -39.58 -0.40 -2.68 16 23 C -0.14 -2.73 9.45 -39.59 -0.37 -3.11 16 24 C 0.09 1.40 5.92 -3.53 -0.02 1.37 16 25 C 0.08 1.21 2.67 -26.57 -0.07 1.14 16 26 H 0.07 1.29 6.25 -51.93 -0.32 0.97 16 27 C 0.09 1.07 6.71 37.16 0.25 1.32 16 28 O -0.56 -7.22 13.63 -39.66 -0.54 -7.76 16 29 O -0.37 -6.50 10.19 -39.66 -0.40 -6.90 16 30 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.11 2.31 6.69 -51.93 -0.35 1.96 16 32 H 0.05 1.08 6.04 -51.93 -0.31 0.77 16 33 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.14 2.82 3.93 -51.93 -0.20 2.62 16 35 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 36 H 0.12 2.56 7.92 -52.49 -0.42 2.14 16 37 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 38 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 39 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 40 H 0.11 2.00 7.95 -52.49 -0.42 1.58 16 41 H 0.10 1.57 7.08 -51.93 -0.37 1.20 16 42 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.38 2.72 9.12 45.56 0.42 3.14 16 LS Contribution 352.42 15.07 5.31 5.31 Total: -1.00 -29.03 352.42 -7.83 -36.86 By element: Atomic # 1 Polarization: 19.70 SS G_CDS: -5.58 Total: 14.12 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: -2.43 Total: -9.29 kcal Atomic # 7 Polarization: -33.81 SS G_CDS: 0.33 Total: -33.48 kcal Atomic # 8 Polarization: -26.81 SS G_CDS: -0.86 Total: -27.68 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -4.59 Total: 14.16 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.03 -7.83 -36.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362678722.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.414 kcal (2) G-P(sol) polarization free energy of solvation -29.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds