Wall clock time and date at job start Sat Apr 11 2020 00:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.90261 * 2 1 4 4 C 1.53998 * 109.91120 * 238.90466 * 2 1 3 5 5 H 1.09000 * 110.33352 * 0.74739 * 4 2 1 6 6 C 1.53003 * 110.32681 * 122.86335 * 4 2 1 7 7 O 1.42896 * 109.47236 * 185.00068 * 6 4 2 8 8 C 1.54617 * 105.04508 * 241.75069 * 4 2 1 9 9 C 1.54944 * 102.83664 * 21.85352 * 8 4 2 10 10 N 1.47487 * 109.90965 * 121.09017 * 2 1 3 11 11 C 1.34780 * 127.03319 * 274.06652 * 10 2 1 12 12 O 1.21275 * 119.99833 * 0.02562 * 11 10 2 13 13 C 1.50697 * 119.99772 * 180.02562 * 11 10 2 14 14 C 1.50697 * 109.47160 * 180.02562 * 13 11 10 15 15 C 1.38326 * 119.96605 * 89.99556 * 14 13 11 16 16 C 1.38278 * 120.13587 * 180.02562 * 15 14 13 17 17 C 1.38119 * 120.07253 * 359.97390 * 16 15 14 18 18 C 1.38862 * 119.92943 * 0.02562 * 17 16 15 19 19 O 1.35754 * 120.06808 * 179.97438 * 18 17 16 20 20 C 1.34831 * 117.00063 * 354.46935 * 19 18 17 21 21 H 1.07997 * 120.00053 * 5.05637 * 20 19 18 22 22 C 1.38654 * 120.00000 * 185.05485 * 20 19 18 23 23 N 1.31559 * 119.99934 * 359.97438 * 22 20 19 24 24 Si 1.86792 * 120.00068 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47243 * 0.02562 * 24 22 20 26 26 H 1.48506 * 109.47025 * 120.00442 * 24 22 20 27 27 H 1.48504 * 109.47033 * 239.99609 * 24 22 20 28 28 C 1.38074 * 119.96388 * 269.72535 * 14 13 11 29 29 H 1.09003 * 109.47328 * 180.70108 * 1 2 3 30 30 H 1.09004 * 109.47136 * 300.70063 * 1 2 3 31 31 H 1.09004 * 109.47105 * 60.70294 * 1 2 3 32 32 H 1.09000 * 109.47043 * 304.99865 * 6 4 2 33 33 H 1.09003 * 109.47139 * 64.99417 * 6 4 2 34 34 H 0.96703 * 114.00007 * 179.97438 * 7 6 4 35 35 H 1.08999 * 110.73940 * 140.18677 * 8 4 2 36 36 H 1.08996 * 110.74273 * 263.33436 * 8 4 2 37 37 H 1.09004 * 110.66370 * 81.06459 * 9 8 4 38 38 H 1.09001 * 110.65728 * 204.01473 * 9 8 4 39 39 H 1.09005 * 109.47107 * 300.00028 * 13 11 10 40 40 H 1.09002 * 109.47708 * 59.99726 * 13 11 10 41 41 H 1.07994 * 119.93330 * 359.97438 * 15 14 13 42 42 H 1.08002 * 119.96581 * 180.02562 * 16 15 14 43 43 H 1.08004 * 120.04074 * 180.02562 * 17 16 15 44 44 H 0.96995 * 120.00157 * 180.02562 * 23 22 20 45 45 H 1.07998 * 120.03805 * 359.97438 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9011 1.0249 0.0000 4 6 2.0545 -0.7478 -1.2399 5 1 1.2225 -1.1001 -1.8497 6 6 2.9675 0.1630 -2.0632 7 8 3.3497 -0.5071 -3.2659 8 6 2.8556 -1.9447 -0.6776 9 6 2.2691 -2.1130 0.7466 10 7 2.0322 -0.7161 1.1875 11 6 2.2369 -0.2046 2.4176 12 8 2.0009 0.9650 2.6349 13 6 2.7591 -1.0859 3.5228 14 6 2.8975 -0.2776 4.7870 15 6 1.8372 -0.1907 5.6711 16 6 1.9602 0.5505 6.8320 17 6 3.1430 1.2063 7.1124 18 6 4.2093 1.1210 6.2268 19 8 5.3729 1.7648 6.4994 20 6 5.3913 2.5620 7.5867 21 1 4.5333 2.6023 8.2412 22 6 6.5119 3.3299 7.8643 23 7 7.5573 3.2803 7.0672 24 14 6.5372 4.4349 9.3702 25 1 5.2485 4.3100 10.0975 26 1 7.6510 4.0279 10.2641 27 1 6.7325 5.8447 8.9465 28 6 4.0844 0.3711 5.0643 29 1 -0.3634 -1.0276 0.0126 30 1 -0.3634 0.5247 0.8837 31 1 -0.3633 0.5029 -0.8963 32 1 2.4357 1.0813 -2.3122 33 1 3.8581 0.4049 -1.4831 34 1 3.9302 0.0128 -3.8385 35 1 2.6821 -2.8400 -1.2747 36 1 3.9194 -1.7112 -0.6348 37 1 1.3311 -2.6673 0.7133 38 1 2.9851 -2.6100 1.4012 39 1 2.0631 -1.9077 3.6917 40 1 3.7322 -1.4867 3.2390 41 1 0.9112 -0.7022 5.4540 42 1 1.1308 0.6161 7.5205 43 1 3.2387 1.7847 8.0194 44 1 8.3414 3.8173 7.2617 45 1 4.9135 0.2990 4.3760 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362763523.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:01:36 Heat of formation + Delta-G solvation = -88.370820 kcal Electronic energy + Delta-G solvation = -26400.049933 eV Core-core repulsion = 22576.153594 eV Total energy + Delta-G solvation = -3823.896339 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.41232 -39.04081 -38.08953 -36.67448 -36.24276 -32.75420 -32.23379 -31.63726 -31.27572 -29.15134 -28.12323 -26.91690 -25.20782 -23.99556 -23.10894 -21.60488 -21.07397 -20.34141 -19.14058 -17.63800 -17.54004 -17.09717 -16.87729 -16.32797 -15.37599 -15.18508 -14.98810 -14.61472 -14.40897 -14.30648 -13.94266 -13.58979 -13.47831 -13.35069 -13.27012 -13.05255 -12.60079 -12.51852 -12.34010 -12.30541 -11.84093 -11.71066 -11.48281 -11.34193 -11.23004 -11.03840 -10.92974 -10.79988 -10.70486 -10.55624 -10.38550 -10.28989 -9.68061 -9.27553 -8.78759 -8.77917 -8.00601 -7.15597 -6.38943 -3.97741 2.13294 2.45031 2.79025 2.92829 3.16089 3.17758 3.23052 3.71147 4.01433 4.25006 4.32350 4.53164 4.67058 4.88029 4.92990 4.97240 5.03041 5.05802 5.12175 5.17376 5.21158 5.23368 5.31279 5.36316 5.41363 5.52581 5.56441 5.70903 5.72111 5.78801 5.80858 5.90111 5.99086 6.02757 6.22318 6.27745 6.39909 6.72129 6.97778 7.13427 7.25243 7.32841 7.42908 7.49123 7.52001 7.88969 8.06479 8.31467 9.07085 9.78352 10.79572 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.017985 B = 0.002669 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.464787 B =10487.389410 C =11344.668157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.137 3.863 3 H 0.084 0.916 4 C -0.097 4.097 5 H 0.093 0.907 6 C 0.083 3.917 7 O -0.573 6.573 8 C -0.123 4.123 9 C 0.097 3.903 10 N -0.626 5.626 11 C 0.535 3.465 12 O -0.517 6.517 13 C -0.088 4.088 14 C -0.033 4.033 15 C -0.196 4.196 16 C -0.075 4.075 17 C -0.231 4.231 18 C 0.155 3.845 19 O -0.181 6.181 20 C -0.389 4.389 21 H 0.092 0.908 22 C 0.038 3.962 23 N -0.865 5.865 24 Si 0.940 3.060 25 H -0.267 1.267 26 H -0.276 1.276 27 H -0.276 1.276 28 C -0.174 4.174 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.048 0.952 33 H 0.050 0.950 34 H 0.381 0.619 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.084 0.916 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.102 0.898 42 H 0.107 0.893 43 H 0.126 0.874 44 H 0.268 0.732 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.190 -11.176 -16.591 22.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.033 3.967 3 H 0.102 0.898 4 C -0.116 4.116 5 H 0.111 0.889 6 C 0.005 3.995 7 O -0.379 6.379 8 C -0.161 4.161 9 C -0.026 4.026 10 N -0.363 5.363 11 C 0.324 3.676 12 O -0.390 6.390 13 C -0.128 4.128 14 C -0.034 4.034 15 C -0.215 4.215 16 C -0.093 4.093 17 C -0.250 4.250 18 C 0.102 3.898 19 O -0.084 6.084 20 C -0.466 4.466 21 H 0.109 0.891 22 C -0.166 4.166 23 N -0.500 5.500 24 Si 0.765 3.235 25 H -0.191 1.191 26 H -0.202 1.202 27 H -0.202 1.202 28 C -0.193 4.193 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.228 0.772 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.103 0.897 39 H 0.115 0.885 40 H 0.116 0.884 41 H 0.120 0.880 42 H 0.125 0.875 43 H 0.144 0.856 44 H 0.078 0.922 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -11.220 -10.832 -16.197 22.484 hybrid contribution 0.299 1.045 0.499 1.196 sum -10.921 -9.787 -15.697 21.482 Atomic orbital electron populations 1.22132 0.94612 1.02211 1.02584 1.21416 0.94276 0.97188 0.83812 0.89762 1.22107 0.98616 0.95906 0.95005 0.88907 1.22259 0.97481 0.94101 0.85692 1.86437 1.71182 1.46652 1.33634 1.22709 1.00160 0.98251 0.94980 1.22622 1.00674 0.83696 0.95648 1.49012 1.66776 1.11237 1.09260 1.20446 0.77327 0.88456 0.81363 1.90766 1.50151 1.17055 1.81044 1.20562 1.02872 0.97660 0.91674 1.18668 0.93741 0.97484 0.93499 1.20341 0.97935 1.06289 0.96920 1.20674 0.96418 0.95960 0.96238 1.21178 0.94493 1.06988 1.02361 1.19267 0.86472 0.91547 0.92541 1.83975 1.27369 1.52753 1.44349 1.21364 1.02965 1.21037 1.01215 0.89085 1.25273 0.94696 0.97486 0.99131 1.70051 1.04440 1.38983 1.36554 0.85655 0.78679 0.79300 0.79830 1.19129 1.20202 1.20189 1.19934 0.98172 1.03747 0.97461 0.92313 0.91814 0.91661 0.93360 0.93138 0.77232 0.89875 0.90527 0.90937 0.89724 0.88490 0.88372 0.87980 0.87483 0.85610 0.92187 0.86888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 9.30 37.16 0.35 -1.11 16 2 C 0.14 1.42 3.01 -66.87 -0.20 1.22 16 3 H 0.08 1.02 7.59 -51.93 -0.39 0.63 16 4 C -0.10 -0.79 2.91 -89.25 -0.26 -1.05 16 5 H 0.09 0.70 7.69 -51.93 -0.40 0.30 16 6 C 0.08 0.66 6.13 37.16 0.23 0.88 16 7 O -0.57 -4.48 13.55 -35.23 -0.48 -4.95 16 8 C -0.12 -0.93 6.52 -24.86 -0.16 -1.09 16 9 C 0.10 0.76 6.94 -1.98 -0.01 0.75 16 10 N -0.63 -7.28 2.93 -162.07 -0.48 -7.76 16 11 C 0.53 8.29 7.89 -10.99 -0.09 8.20 16 12 O -0.52 -10.54 16.37 5.56 0.09 -10.44 16 13 C -0.09 -1.24 4.78 -29.04 -0.14 -1.38 16 14 C -0.03 -0.63 4.37 -104.65 -0.46 -1.09 16 15 C -0.20 -3.64 9.70 -39.53 -0.38 -4.03 16 16 C -0.07 -1.47 10.04 -39.61 -0.40 -1.87 16 17 C -0.23 -5.32 9.17 -39.39 -0.36 -5.69 16 18 C 0.15 3.95 6.65 -39.10 -0.26 3.69 16 19 O -0.18 -5.36 9.76 0.03 0.00 -5.36 16 20 C -0.39 -11.26 9.49 30.89 0.29 -10.97 16 21 H 0.09 2.45 5.20 -52.49 -0.27 2.18 16 22 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 23 N -0.86 -25.99 13.67 55.48 0.76 -25.23 16 24 Si 0.94 21.12 29.55 -169.99 -5.02 16.09 16 25 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 26 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 27 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 28 C -0.17 -3.90 9.64 -39.40 -0.38 -4.28 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.05 0.43 7.99 -51.93 -0.42 0.02 16 34 H 0.38 1.43 9.12 45.56 0.42 1.84 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.08 0.64 7.76 -51.93 -0.40 0.24 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.08 0.58 7.27 -51.93 -0.38 0.20 16 39 H 0.10 1.07 8.08 -51.93 -0.42 0.65 16 40 H 0.10 1.20 7.86 -51.93 -0.41 0.79 16 41 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 42 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 43 H 0.13 2.88 5.64 -52.48 -0.30 2.58 16 44 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 45 H 0.11 2.47 8.06 -52.49 -0.42 2.04 16 LS Contribution 374.72 15.07 5.65 5.65 Total: -1.00 -36.22 374.72 -7.72 -43.94 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -5.91 Total: 4.89 kcal Atomic # 6 Polarization: -14.49 SS G_CDS: -2.33 Total: -16.82 kcal Atomic # 7 Polarization: -33.27 SS G_CDS: 0.28 Total: -32.99 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: -0.39 Total: -20.76 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -36.22 -7.72 -43.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362763523.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.433 kcal (2) G-P(sol) polarization free energy of solvation -36.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds