Wall clock time and date at job start Sat Apr 11 2020 00:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47219 * 2 1 4 4 C 1.50699 * 109.46796 * 240.00409 * 2 1 3 5 5 H 1.08008 * 119.99949 * 274.87028 * 4 2 1 6 6 C 1.37878 * 120.00568 * 94.87132 * 4 2 1 7 7 N 1.31516 * 119.99368 * 354.89744 * 6 4 2 8 8 Si 1.86794 * 120.00249 * 174.89337 * 6 4 2 9 9 H 1.48504 * 109.46816 * 90.00310 * 8 6 4 10 10 H 1.48503 * 109.47230 * 209.99887 * 8 6 4 11 11 H 1.48500 * 109.47313 * 330.00469 * 8 6 4 12 12 N 1.46498 * 109.47272 * 120.00379 * 2 1 3 13 13 C 1.46504 * 119.99938 * 65.14434 * 12 2 1 14 14 C 1.34775 * 119.99728 * 245.15041 * 12 2 1 15 15 O 1.21280 * 120.00203 * 5.52151 * 14 12 2 16 16 C 1.50700 * 119.99557 * 185.52128 * 14 12 2 17 17 H 1.09001 * 109.52885 * 335.06071 * 16 14 12 18 18 O 1.43082 * 109.52299 * 214.92791 * 16 14 12 19 19 C 1.43071 * 113.59241 * 298.05393 * 18 16 14 20 20 C 1.53151 * 109.15260 * 302.04753 * 19 18 16 21 21 O 1.43075 * 109.14777 * 55.31069 * 20 19 18 22 22 C 1.43071 * 113.59484 * 302.04871 * 21 20 19 23 23 H 1.09006 * 109.52460 * 298.05170 * 22 21 20 24 24 C 1.50698 * 109.52598 * 177.85836 * 22 21 20 25 25 C 1.38238 * 119.99578 * 329.72425 * 24 22 21 26 26 C 1.38240 * 119.99772 * 179.78598 * 25 24 22 27 27 C 1.38236 * 120.00036 * 0.46961 * 26 25 24 28 28 C 1.38231 * 119.99710 * 359.76139 * 27 26 25 29 29 C 1.38231 * 120.00410 * 0.02710 * 28 27 26 30 30 H 1.09000 * 109.47521 * 294.97960 * 1 2 3 31 31 H 1.08999 * 109.47368 * 54.97522 * 1 2 3 32 32 H 1.08997 * 109.47689 * 174.97709 * 1 2 3 33 33 H 0.97000 * 120.00000 * 4.96318 * 7 6 4 34 34 H 1.09003 * 109.47027 * 95.14068 * 13 12 2 35 35 H 1.08998 * 109.47079 * 215.14250 * 13 12 2 36 36 H 1.09004 * 109.47261 * 335.13926 * 13 12 2 37 37 H 1.08998 * 109.52621 * 61.94341 * 19 18 16 38 38 H 1.08999 * 109.52345 * 182.14700 * 19 18 16 39 39 H 1.08996 * 109.52450 * 175.21928 * 20 19 18 40 40 H 1.09008 * 109.51922 * 295.41301 * 20 19 18 41 41 H 1.07994 * 120.00556 * 0.02562 * 25 24 22 42 42 H 1.08000 * 119.99717 * 180.25131 * 26 25 24 43 43 H 1.08000 * 120.00164 * 179.79137 * 27 26 25 44 44 H 1.08008 * 119.99660 * 179.97438 * 28 27 26 45 45 H 1.08006 * 120.00177 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7103 -1.2305 5 1 2.1373 -1.7853 -1.2285 6 6 2.3576 0.0119 -2.3590 7 7 2.1356 1.3076 -2.3971 8 14 3.1138 -0.8499 -3.8337 9 1 2.0351 -1.3127 -4.7434 10 1 4.0008 0.0954 -4.5584 11 1 3.9067 -2.0175 -3.3719 12 7 2.0183 -0.6907 1.1961 13 6 1.7597 -2.1219 1.3724 14 6 2.7054 -0.0094 2.1343 15 8 2.8334 1.1929 2.0387 16 6 3.3147 -0.7415 3.3021 17 1 2.7659 -1.6667 3.4785 18 8 3.2500 0.0829 4.4697 19 6 3.9847 1.3047 4.3494 20 6 5.4500 0.9817 4.0429 21 8 5.5146 0.1573 2.8754 22 6 4.7800 -1.0644 2.9957 23 1 5.1981 -1.6628 3.8052 24 6 4.8664 -1.8336 1.7026 25 6 4.9936 -1.1575 0.5036 26 6 5.0774 -1.8632 -0.6822 27 6 5.0241 -3.2445 -0.6698 28 6 4.8921 -3.9202 0.5288 29 6 4.8127 -3.2148 1.7150 30 1 -0.3634 0.4340 0.9315 31 1 -0.3634 0.5898 -0.8415 32 1 -0.3634 -1.0236 -0.0900 33 1 1.8105 1.7674 -1.6072 34 1 2.6160 -2.6928 1.0133 35 1 1.5987 -2.3345 2.4293 36 1 0.8720 -2.4032 0.8059 37 1 3.5666 1.9030 3.5399 38 1 3.9222 1.8609 5.2847 39 1 5.9978 1.9074 3.8662 40 1 5.8907 0.4522 4.8877 41 1 5.0315 -0.0783 0.4934 42 1 5.1809 -1.3351 -1.6186 43 1 5.0861 -3.7956 -1.5965 44 1 4.8500 -4.9994 0.5385 45 1 4.7091 -3.7428 2.6514 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412338388.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:01:38 Heat of formation + Delta-G solvation = -75.599192 kcal Electronic energy + Delta-G solvation = -29947.876855 eV Core-core repulsion = 26124.534335 eV Total energy + Delta-G solvation = -3823.342520 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.86102 -38.54014 -38.16143 -35.90732 -35.22300 -33.39978 -32.36884 -30.47887 -29.83760 -29.38185 -27.47256 -26.14555 -24.92133 -24.59397 -22.78379 -21.94555 -21.38090 -20.45320 -18.55987 -17.24709 -16.84569 -16.80681 -16.67361 -15.97243 -15.65340 -15.29703 -15.01791 -14.39511 -14.06864 -14.05071 -13.71683 -13.53954 -13.28739 -13.05867 -12.92532 -12.63640 -12.51898 -12.20501 -12.01690 -11.86208 -11.55345 -11.35785 -11.19654 -11.16625 -10.96846 -10.83825 -10.74531 -10.61074 -10.32715 -10.11530 -10.04091 -9.41540 -8.78145 -8.47143 -8.43867 -8.41110 -8.14715 -7.50408 -6.40786 -4.12710 1.68235 1.89223 3.16864 3.35732 3.35971 3.53130 3.67746 3.86318 3.97364 4.24319 4.45736 4.80471 4.85699 4.93062 5.17208 5.21096 5.24297 5.31115 5.37756 5.39205 5.44201 5.49054 5.65255 5.69918 5.84477 5.94015 6.04127 6.09290 6.28274 6.32872 6.35703 6.45249 6.49238 6.51466 6.73764 6.81970 6.92075 7.05152 7.06343 7.10074 7.23481 7.27773 7.43348 7.63074 7.94918 8.31293 8.49297 8.78765 8.97879 9.58811 10.96990 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.013259 B = 0.006963 C = 0.005717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.292146 B = 4020.421582 C = 4896.768126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.238 3.762 3 H 0.067 0.933 4 C -0.586 4.586 5 H 0.055 0.945 6 C 0.029 3.971 7 N -0.906 5.906 8 Si 1.056 2.944 9 H -0.289 1.289 10 H -0.284 1.284 11 H -0.281 1.281 12 N -0.574 5.574 13 C 0.077 3.923 14 C 0.495 3.505 15 O -0.544 6.544 16 C 0.040 3.960 17 H 0.125 0.875 18 O -0.363 6.363 19 C -0.008 4.008 20 C 0.033 3.967 21 O -0.360 6.360 22 C 0.121 3.879 23 H 0.078 0.922 24 C -0.099 4.099 25 C -0.052 4.052 26 C -0.086 4.086 27 C -0.113 4.113 28 C -0.129 4.129 29 C -0.116 4.116 30 H 0.019 0.981 31 H 0.054 0.946 32 H 0.040 0.960 33 H 0.273 0.727 34 H 0.063 0.937 35 H 0.046 0.954 36 H 0.070 0.930 37 H 0.116 0.884 38 H 0.094 0.906 39 H 0.103 0.897 40 H 0.051 0.949 41 H 0.123 0.877 42 H 0.119 0.881 43 H 0.115 0.885 44 H 0.117 0.883 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.355 -8.569 10.509 14.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.138 3.862 3 H 0.085 0.915 4 C -0.625 4.625 5 H 0.073 0.927 6 C -0.177 4.177 7 N -0.542 5.542 8 Si 0.885 3.115 9 H -0.216 1.216 10 H -0.210 1.210 11 H -0.207 1.207 12 N -0.305 5.305 13 C -0.066 4.066 14 C 0.282 3.718 15 O -0.424 6.424 16 C -0.021 4.021 17 H 0.142 0.858 18 O -0.281 6.281 19 C -0.084 4.084 20 C -0.044 4.044 21 O -0.279 6.279 22 C 0.062 3.938 23 H 0.096 0.904 24 C -0.099 4.099 25 C -0.070 4.070 26 C -0.104 4.104 27 C -0.131 4.131 28 C -0.147 4.147 29 C -0.134 4.134 30 H 0.039 0.961 31 H 0.073 0.927 32 H 0.059 0.941 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.064 0.936 36 H 0.089 0.911 37 H 0.133 0.867 38 H 0.112 0.888 39 H 0.121 0.879 40 H 0.069 0.931 41 H 0.141 0.859 42 H 0.137 0.863 43 H 0.134 0.866 44 H 0.135 0.865 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 5.916 -7.684 8.888 13.154 hybrid contribution -0.722 -0.371 1.594 1.789 sum 5.193 -8.055 10.482 14.203 Atomic orbital electron populations 1.22160 0.99362 0.99946 0.98724 1.19100 0.89865 0.95312 0.81900 0.91486 1.21961 1.47789 0.94859 0.97874 0.92686 1.25655 0.94932 0.96021 1.01135 1.70745 1.42377 1.09284 1.31757 0.83779 0.76926 0.75254 0.75531 1.21617 1.21002 1.20653 1.48410 1.52331 1.08803 1.20974 1.21774 1.02425 0.83178 0.99262 1.20715 0.79356 0.87915 0.83831 1.90454 1.61274 1.14432 1.76265 1.22996 0.96948 0.95321 0.86881 0.85766 1.88094 1.72945 1.32390 1.34642 1.23873 0.91638 0.87895 1.04980 1.23167 0.97308 0.95688 0.88240 1.88166 1.70917 1.30926 1.37848 1.21212 0.90061 0.86345 0.96191 0.90431 1.19291 1.04141 0.93204 0.93295 1.20878 0.94549 1.00397 0.91159 1.21115 0.97279 0.93890 0.98161 1.21117 0.99680 0.94675 0.97614 1.20876 1.02288 0.99161 0.92397 1.20668 1.02011 0.92622 0.98127 0.96148 0.92729 0.94100 0.91489 0.91869 0.93592 0.91084 0.86663 0.88761 0.87939 0.93064 0.85927 0.86267 0.86646 0.86520 0.86649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 9.17 37.16 0.34 -2.87 16 2 C 0.24 5.76 2.48 -69.08 -0.17 5.59 16 3 H 0.07 1.90 5.21 -51.93 -0.27 1.63 16 4 C -0.59 -14.71 7.69 -34.44 -0.26 -14.97 16 5 H 0.05 1.37 7.26 -52.48 -0.38 0.99 16 6 C 0.03 0.76 5.45 -17.82 -0.10 0.67 16 7 N -0.91 -26.33 13.63 55.43 0.76 -25.57 16 8 Si 1.06 23.73 28.92 -169.99 -4.92 18.81 16 9 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -5.69 6.78 56.52 0.38 -5.31 16 12 N -0.57 -11.93 2.16 -175.26 -0.38 -12.31 16 13 C 0.08 1.33 8.28 59.85 0.50 1.82 16 14 C 0.50 10.35 5.05 -10.99 -0.06 10.30 16 15 O -0.54 -13.14 12.80 -11.48 -0.15 -13.29 16 16 C 0.04 0.68 2.96 -27.81 -0.08 0.59 16 17 H 0.12 1.84 5.75 -51.93 -0.30 1.54 16 18 O -0.36 -6.18 10.65 -61.09 -0.65 -6.83 16 19 C -0.01 -0.12 6.59 37.24 0.25 0.12 16 20 C 0.03 0.47 7.05 37.24 0.26 0.73 16 21 O -0.36 -6.29 9.15 -49.03 -0.45 -6.73 16 22 C 0.12 1.92 2.78 -27.81 -0.08 1.85 16 23 H 0.08 1.06 8.09 -51.93 -0.42 0.64 16 24 C -0.10 -1.63 3.18 -104.62 -0.33 -1.96 16 25 C -0.05 -1.00 7.83 -39.58 -0.31 -1.31 16 26 C -0.09 -1.61 9.52 -39.58 -0.38 -1.98 16 27 C -0.11 -1.79 10.05 -39.58 -0.40 -2.18 16 28 C -0.13 -1.77 9.53 -39.59 -0.38 -2.14 16 29 C -0.12 -1.60 8.16 -39.59 -0.32 -1.93 16 30 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.05 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.04 0.85 7.07 -51.93 -0.37 0.48 16 33 H 0.27 8.11 6.55 -40.82 -0.27 7.84 16 34 H 0.06 1.07 4.90 -51.93 -0.25 0.82 16 35 H 0.05 0.65 6.18 -51.93 -0.32 0.33 16 36 H 0.07 1.22 6.82 -51.93 -0.35 0.87 16 37 H 0.12 2.19 5.03 -51.93 -0.26 1.93 16 38 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 39 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.05 0.62 8.14 -51.92 -0.42 0.20 16 41 H 0.12 2.75 7.45 -52.49 -0.39 2.36 16 42 H 0.12 2.34 6.68 -52.49 -0.35 1.99 16 43 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 44 H 0.12 1.27 8.06 -52.48 -0.42 0.84 16 45 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16 LS Contribution 345.94 15.07 5.21 5.21 Total: -1.00 -30.64 345.94 -8.23 -38.86 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -6.13 Total: 9.53 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: -1.52 Total: -7.68 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: 0.38 Total: -37.88 kcal Atomic # 8 Polarization: -25.60 SS G_CDS: -1.25 Total: -26.85 kcal Atomic # 14 Polarization: 23.73 SS G_CDS: -4.92 Total: 18.81 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.64 -8.23 -38.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412338388.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.735 kcal (2) G-P(sol) polarization free energy of solvation -30.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds