Wall clock time and date at job start Sat Apr 11 2020 00:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47219 * 2 1 4 4 C 1.50699 * 109.46796 * 240.00409 * 2 1 3 5 5 H 1.08008 * 119.99949 * 274.87028 * 4 2 1 6 6 C 1.37878 * 120.00568 * 94.87132 * 4 2 1 7 7 N 1.31516 * 119.99368 * 354.89744 * 6 4 2 8 8 Si 1.86794 * 120.00249 * 174.89337 * 6 4 2 9 9 H 1.48504 * 109.46816 * 90.00310 * 8 6 4 10 10 H 1.48503 * 109.47230 * 209.99887 * 8 6 4 11 11 H 1.48500 * 109.47313 * 330.00469 * 8 6 4 12 12 N 1.46498 * 109.47272 * 120.00379 * 2 1 3 13 13 C 1.46504 * 119.99938 * 65.14434 * 12 2 1 14 14 C 1.34775 * 119.99728 * 245.15041 * 12 2 1 15 15 O 1.21280 * 120.00203 * 5.52151 * 14 12 2 16 16 C 1.50700 * 119.99557 * 185.52128 * 14 12 2 17 17 H 1.09001 * 109.52885 * 335.06071 * 16 14 12 18 18 O 1.43082 * 109.52299 * 214.92791 * 16 14 12 19 19 C 1.43071 * 113.59241 * 298.05393 * 18 16 14 20 20 C 1.53151 * 109.15260 * 302.04753 * 19 18 16 21 21 O 1.43075 * 109.14777 * 55.31069 * 20 19 18 22 22 C 1.43071 * 113.59484 * 302.04871 * 21 20 19 23 23 H 1.09006 * 109.52460 * 298.05170 * 22 21 20 24 24 C 1.50698 * 109.52598 * 177.85836 * 22 21 20 25 25 C 1.38238 * 119.99578 * 329.72425 * 24 22 21 26 26 C 1.38240 * 119.99772 * 179.78598 * 25 24 22 27 27 C 1.38236 * 120.00036 * 0.46961 * 26 25 24 28 28 C 1.38231 * 119.99710 * 359.76139 * 27 26 25 29 29 C 1.38231 * 120.00410 * 0.02710 * 28 27 26 30 30 H 1.09000 * 109.47521 * 294.97960 * 1 2 3 31 31 H 1.08999 * 109.47368 * 54.97522 * 1 2 3 32 32 H 1.08997 * 109.47689 * 174.97709 * 1 2 3 33 33 H 0.97000 * 120.00000 * 4.96318 * 7 6 4 34 34 H 1.09003 * 109.47027 * 95.14068 * 13 12 2 35 35 H 1.08998 * 109.47079 * 215.14250 * 13 12 2 36 36 H 1.09004 * 109.47261 * 335.13926 * 13 12 2 37 37 H 1.08998 * 109.52621 * 61.94341 * 19 18 16 38 38 H 1.08999 * 109.52345 * 182.14700 * 19 18 16 39 39 H 1.08996 * 109.52450 * 175.21928 * 20 19 18 40 40 H 1.09008 * 109.51922 * 295.41301 * 20 19 18 41 41 H 1.07994 * 120.00556 * 0.02562 * 25 24 22 42 42 H 1.08000 * 119.99717 * 180.25131 * 26 25 24 43 43 H 1.08000 * 120.00164 * 179.79137 * 27 26 25 44 44 H 1.08008 * 119.99660 * 179.97438 * 28 27 26 45 45 H 1.08006 * 120.00177 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7103 -1.2305 5 1 2.1373 -1.7853 -1.2285 6 6 2.3576 0.0119 -2.3590 7 7 2.1356 1.3076 -2.3971 8 14 3.1138 -0.8499 -3.8337 9 1 2.0351 -1.3127 -4.7434 10 1 4.0008 0.0954 -4.5584 11 1 3.9067 -2.0175 -3.3719 12 7 2.0183 -0.6907 1.1961 13 6 1.7597 -2.1219 1.3724 14 6 2.7054 -0.0094 2.1343 15 8 2.8334 1.1929 2.0387 16 6 3.3147 -0.7415 3.3021 17 1 2.7659 -1.6667 3.4785 18 8 3.2500 0.0829 4.4697 19 6 3.9847 1.3047 4.3494 20 6 5.4500 0.9817 4.0429 21 8 5.5146 0.1573 2.8754 22 6 4.7800 -1.0644 2.9957 23 1 5.1981 -1.6628 3.8052 24 6 4.8664 -1.8336 1.7026 25 6 4.9936 -1.1575 0.5036 26 6 5.0774 -1.8632 -0.6822 27 6 5.0241 -3.2445 -0.6698 28 6 4.8921 -3.9202 0.5288 29 6 4.8127 -3.2148 1.7150 30 1 -0.3634 0.4340 0.9315 31 1 -0.3634 0.5898 -0.8415 32 1 -0.3634 -1.0236 -0.0900 33 1 1.8105 1.7674 -1.6072 34 1 2.6160 -2.6928 1.0133 35 1 1.5987 -2.3345 2.4293 36 1 0.8720 -2.4032 0.8059 37 1 3.5666 1.9030 3.5399 38 1 3.9222 1.8609 5.2847 39 1 5.9978 1.9074 3.8662 40 1 5.8907 0.4522 4.8877 41 1 5.0315 -0.0783 0.4934 42 1 5.1809 -1.3351 -1.6186 43 1 5.0861 -3.7956 -1.5965 44 1 4.8500 -4.9994 0.5385 45 1 4.7091 -3.7428 2.6514 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412338388.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:01:37 Heat of formation + Delta-G solvation = -94.487977 kcal Electronic energy + Delta-G solvation = -29948.695934 eV Core-core repulsion = 26124.534335 eV Total energy + Delta-G solvation = -3824.161599 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.22679 -39.82420 -39.65726 -37.33479 -36.85235 -35.10380 -33.84766 -31.70584 -31.52603 -30.73557 -28.79405 -27.63205 -26.83642 -26.00652 -24.17038 -23.29402 -22.78288 -21.92453 -20.14828 -18.71928 -18.60040 -18.14050 -18.00910 -17.30788 -17.00350 -16.74040 -16.35878 -15.88359 -15.67459 -15.34133 -15.20711 -15.04970 -14.90571 -14.59633 -14.19511 -14.09589 -13.79937 -13.54588 -13.48782 -13.37901 -13.21091 -13.04896 -12.91808 -12.71753 -12.59364 -12.26263 -12.05540 -11.97361 -11.92261 -11.78260 -11.48138 -10.77896 -10.70492 -10.52065 -9.85461 -9.69757 -9.46775 -9.19261 -8.54486 -6.25601 0.45577 0.66737 1.48939 1.56173 1.64246 1.72279 2.22241 2.57360 2.63312 2.65195 2.99504 3.28229 3.55086 3.56644 3.65789 3.97187 4.03113 4.06206 4.22011 4.25572 4.33978 4.37479 4.38909 4.41140 4.51562 4.63206 4.69612 4.71395 4.74616 4.80671 4.86341 4.98014 5.03170 5.13718 5.22268 5.25347 5.31597 5.62689 5.67749 5.76438 5.79896 5.84803 5.98291 6.10063 6.21508 6.27541 6.59095 6.79835 7.35126 7.55425 8.82276 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.013259 B = 0.006963 C = 0.005717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.292146 B = 4020.421582 C = 4896.768126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.241 3.759 3 H 0.015 0.985 4 C -0.563 4.563 5 H 0.063 0.937 6 C -0.023 4.023 7 N -0.945 5.945 8 Si 1.092 2.908 9 H -0.278 1.278 10 H -0.299 1.299 11 H -0.246 1.246 12 N -0.578 5.578 13 C 0.072 3.928 14 C 0.484 3.516 15 O -0.590 6.590 16 C 0.048 3.952 17 H 0.156 0.844 18 O -0.365 6.365 19 C -0.010 4.010 20 C 0.031 3.969 21 O -0.393 6.393 22 C 0.119 3.881 23 H 0.117 0.883 24 C -0.104 4.104 25 C -0.074 4.074 26 C -0.114 4.114 27 C -0.117 4.117 28 C -0.114 4.114 29 C -0.102 4.102 30 H 0.026 0.974 31 H 0.033 0.967 32 H 0.062 0.938 33 H 0.253 0.747 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.127 0.873 39 H 0.110 0.890 40 H 0.085 0.915 41 H 0.068 0.932 42 H 0.092 0.908 43 H 0.132 0.868 44 H 0.160 0.840 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.850 -13.406 12.988 19.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.139 3.861 3 H 0.033 0.967 4 C -0.602 4.602 5 H 0.081 0.919 6 C -0.221 4.221 7 N -0.584 5.584 8 Si 0.915 3.085 9 H -0.204 1.204 10 H -0.226 1.226 11 H -0.169 1.169 12 N -0.308 5.308 13 C -0.070 4.070 14 C 0.272 3.728 15 O -0.473 6.473 16 C -0.013 4.013 17 H 0.173 0.827 18 O -0.283 6.283 19 C -0.085 4.085 20 C -0.045 4.045 21 O -0.312 6.312 22 C 0.061 3.939 23 H 0.135 0.865 24 C -0.104 4.104 25 C -0.093 4.093 26 C -0.132 4.132 27 C -0.135 4.135 28 C -0.132 4.132 29 C -0.119 4.119 30 H 0.045 0.955 31 H 0.052 0.948 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.087 0.913 35 H 0.103 0.897 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.145 0.855 39 H 0.128 0.872 40 H 0.103 0.897 41 H 0.086 0.914 42 H 0.110 0.890 43 H 0.150 0.850 44 H 0.178 0.822 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 6.403 -12.573 11.400 18.140 hybrid contribution -0.853 1.156 0.920 1.706 sum 5.550 -11.417 12.320 17.690 Atomic orbital electron populations 1.21981 0.97951 1.00829 0.98180 1.18768 0.90787 0.93065 0.83479 0.96733 1.22084 1.45547 0.94897 0.97656 0.91869 1.26913 0.95123 0.95768 1.04341 1.70883 1.45629 1.10803 1.31076 0.83374 0.76714 0.75396 0.73047 1.20371 1.22572 1.16948 1.48271 1.52296 1.10434 1.19809 1.22023 1.02634 0.80458 1.01888 1.21617 0.78638 0.87672 0.84824 1.90471 1.62501 1.16807 1.77508 1.23095 0.97819 0.95510 0.84840 0.82651 1.88081 1.73370 1.32614 1.34199 1.23877 0.92298 0.87296 1.05068 1.23344 0.96477 0.96310 0.88366 1.88154 1.71208 1.32074 1.39766 1.21445 0.89136 0.86266 0.97045 0.86513 1.19453 1.04110 0.94646 0.92222 1.20489 0.97728 0.97827 0.93225 1.21010 0.99813 0.95529 0.96887 1.21353 0.99255 0.93175 0.99738 1.21353 0.99539 1.01193 0.91111 1.21146 0.99444 0.91124 1.00235 0.95487 0.94825 0.91950 0.93631 0.91276 0.89748 0.91079 0.90891 0.85530 0.87165 0.89723 0.91381 0.88982 0.84990 0.82223 0.82053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.98 9.17 71.98 0.66 -5.32 16 2 C 0.24 12.13 2.48 44.24 0.11 12.24 16 3 H 0.01 0.90 5.21 -2.39 -0.01 0.89 16 4 C -0.56 -28.95 7.69 25.60 0.20 -28.76 16 5 H 0.06 3.10 7.26 -2.91 -0.02 3.08 16 6 C -0.02 -1.28 5.45 84.65 0.46 -0.82 16 7 N -0.95 -58.78 13.63 21.45 0.29 -58.49 16 8 Si 1.09 48.87 28.92 68.60 1.98 50.86 16 9 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 10 H -0.30 -14.03 7.11 99.48 0.71 -13.33 16 11 H -0.25 -9.48 6.78 99.48 0.67 -8.80 16 12 N -0.58 -23.97 2.16 -826.79 -1.78 -25.75 16 13 C 0.07 2.24 8.28 127.77 1.06 3.30 16 14 C 0.48 20.49 5.05 87.66 0.44 20.93 16 15 O -0.59 -30.45 12.80 13.26 0.17 -30.28 16 16 C 0.05 1.52 2.96 29.90 0.09 1.61 16 17 H 0.16 3.81 5.75 -2.39 -0.01 3.79 16 18 O -0.36 -11.59 10.65 -124.25 -1.32 -12.91 16 19 C -0.01 -0.29 6.59 72.03 0.47 0.18 16 20 C 0.03 0.85 7.05 72.03 0.51 1.35 16 21 O -0.39 -13.61 9.15 -135.79 -1.24 -14.85 16 22 C 0.12 3.48 2.78 29.90 0.08 3.56 16 23 H 0.12 2.53 8.09 -2.38 -0.02 2.51 16 24 C -0.10 -3.18 3.18 -19.87 -0.06 -3.24 16 25 C -0.07 -2.93 7.83 22.27 0.17 -2.75 16 26 C -0.11 -4.28 9.52 22.27 0.21 -4.06 16 27 C -0.12 -3.37 10.05 22.27 0.22 -3.14 16 28 C -0.11 -2.49 9.53 22.27 0.21 -2.28 16 29 C -0.10 -2.25 8.16 22.27 0.18 -2.06 16 30 H 0.03 1.15 8.14 -2.39 -0.02 1.14 16 31 H 0.03 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.06 2.54 7.07 -2.39 -0.02 2.52 16 33 H 0.25 16.42 6.55 -92.71 -0.61 15.81 16 34 H 0.07 2.06 4.90 -2.39 -0.01 2.05 16 35 H 0.08 1.97 6.18 -2.39 -0.01 1.96 16 36 H 0.07 2.21 6.82 -2.39 -0.02 2.20 16 37 H 0.07 2.93 5.03 -2.43 -0.01 2.92 16 38 H 0.13 2.94 8.14 -2.39 -0.02 2.92 16 39 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 40 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 41 H 0.07 3.37 7.45 -2.91 -0.02 3.35 16 42 H 0.09 3.81 6.68 -2.91 -0.02 3.79 16 43 H 0.13 3.29 8.06 -2.91 -0.02 3.26 16 44 H 0.16 2.22 8.06 -2.91 -0.02 2.20 16 45 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 Total: -1.00 -75.62 345.94 4.26 -71.37 By element: Atomic # 1 Polarization: 28.18 SS G_CDS: 1.14 Total: 29.32 kcal Atomic # 6 Polarization: -14.28 SS G_CDS: 5.02 Total: -9.26 kcal Atomic # 7 Polarization: -82.75 SS G_CDS: -1.49 Total: -84.24 kcal Atomic # 8 Polarization: -55.65 SS G_CDS: -2.40 Total: -58.04 kcal Atomic # 14 Polarization: 48.87 SS G_CDS: 1.98 Total: 50.86 kcal Total: -75.62 4.26 -71.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412338388.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.119 kcal (2) G-P(sol) polarization free energy of solvation -75.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds