Wall clock time and date at job start Sat Apr 11 2020 00:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47397 * 2 1 4 4 C 1.53001 * 109.47312 * 240.00301 * 2 1 3 5 5 N 1.46502 * 109.47396 * 64.99386 * 4 2 1 6 6 C 1.46499 * 120.00349 * 270.00931 * 5 4 2 7 7 C 1.34777 * 119.99559 * 89.99707 * 5 4 2 8 8 O 1.21283 * 120.00046 * 0.02562 * 7 5 4 9 9 C 1.50698 * 119.99686 * 180.02562 * 7 5 4 10 10 C 1.53005 * 109.46990 * 180.02562 * 9 7 5 11 11 H 1.08994 * 109.46934 * 305.97546 * 10 9 7 12 12 C 1.50700 * 109.47299 * 65.97885 * 10 9 7 13 13 H 1.08008 * 119.99531 * 26.90748 * 12 10 9 14 14 C 1.37869 * 120.00160 * 206.90965 * 12 10 9 15 15 N 1.31508 * 120.00032 * 353.27812 * 14 12 10 16 16 Si 1.86806 * 120.00073 * 173.54969 * 14 12 10 17 17 H 1.48497 * 109.46895 * 179.72442 * 16 14 12 18 18 H 1.48495 * 109.46957 * 299.72695 * 16 14 12 19 19 H 1.48501 * 109.46761 * 59.72686 * 16 14 12 20 20 C 1.50705 * 109.47056 * 185.97689 * 10 9 7 21 21 C 1.38237 * 120.00118 * 294.44966 * 20 10 9 22 22 C 1.38237 * 119.99818 * 179.78603 * 21 20 10 23 23 C 1.38236 * 120.00003 * 0.44191 * 22 21 20 24 24 C 1.38236 * 119.99991 * 359.81061 * 23 22 21 25 25 C 1.38228 * 119.99825 * 114.71859 * 20 10 9 26 26 C 1.50694 * 109.47387 * 120.00032 * 2 1 3 27 27 O 1.20833 * 120.00168 * 120.00556 * 26 2 1 28 28 O 1.34228 * 120.00455 * 300.00019 * 26 2 1 29 29 H 1.08997 * 109.47331 * 59.99954 * 1 2 3 30 30 H 1.09004 * 109.46682 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46897 * 299.99498 * 1 2 3 32 32 H 1.08999 * 109.46881 * 304.99680 * 4 2 1 33 33 H 1.08999 * 109.47345 * 185.00077 * 4 2 1 34 34 H 1.08998 * 109.46580 * 270.00058 * 6 5 4 35 35 H 1.09007 * 109.46909 * 29.99033 * 6 5 4 36 36 H 1.08999 * 109.47455 * 149.99624 * 6 5 4 37 37 H 1.09000 * 109.47229 * 60.00363 * 9 7 5 38 38 H 1.09003 * 109.47630 * 300.00294 * 9 7 5 39 39 H 0.97008 * 120.00303 * 354.69126 * 15 14 12 40 40 H 1.08005 * 119.99967 * 359.97438 * 21 20 10 41 41 H 1.07999 * 119.99448 * 180.27078 * 22 21 20 42 42 H 1.07997 * 119.99991 * 179.83259 * 23 22 21 43 43 H 1.07993 * 119.99965 * 180.02562 * 24 23 22 44 44 H 1.07999 * 120.00249 * 359.97438 * 25 20 10 45 45 H 0.96695 * 117.00820 * 179.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.6524 0.0354 -2.4424 6 6 0.3745 -0.2423 -3.1028 7 6 2.4714 0.9870 -2.9324 8 8 3.5295 1.2167 -2.3859 9 6 2.0724 1.7656 -4.1595 10 6 3.1704 2.7745 -4.5026 11 1 3.3824 3.3917 -3.6296 12 6 4.4195 2.0377 -4.9123 13 1 4.3469 1.0502 -5.3438 14 6 5.6548 2.6240 -4.7363 15 7 5.7384 3.8738 -4.3356 16 14 7.2098 1.6456 -5.0742 17 1 8.3974 2.4994 -4.8176 18 1 7.2514 0.4587 -4.1828 19 1 7.2167 1.2010 -6.4911 20 6 2.7095 3.6518 -5.6380 21 6 2.4907 3.1053 -6.8888 22 6 2.0636 3.9092 -7.9292 23 6 1.8642 5.2612 -7.7210 24 6 2.0880 5.8085 -6.4715 25 6 2.5108 5.0038 -5.4301 26 6 2.0324 -0.7104 1.2304 27 8 2.7272 -1.6927 1.1195 28 8 1.7082 -0.2519 2.4496 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.6055 -1.7197 -1.2952 33 1 3.1263 -0.7994 -1.2056 34 1 0.5170 -1.0127 -3.8606 35 1 -0.3485 -0.5886 -2.3641 36 1 0.0041 0.6677 -3.5748 37 1 1.1395 2.2951 -3.9663 38 1 1.9348 1.0804 -4.9959 39 1 4.9337 4.4067 -4.2380 40 1 2.6505 2.0498 -7.0525 41 1 1.8885 3.4815 -8.9053 42 1 1.5331 5.8897 -8.5345 43 1 1.9317 6.8647 -6.3088 44 1 2.6855 5.4314 -4.4539 45 1 2.0536 -0.7410 3.2088 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589019758.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:02:00 Heat of formation + Delta-G solvation = -109.949589 kcal Electronic energy + Delta-G solvation = -27229.579214 eV Core-core repulsion = 23404.747149 eV Total energy + Delta-G solvation = -3824.832065 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.58602 -39.42952 -38.40115 -36.41399 -35.82980 -34.24882 -33.22417 -31.28507 -30.12447 -29.13254 -27.79844 -25.86176 -25.07065 -24.10854 -22.75509 -21.67842 -20.77883 -19.88452 -18.57482 -18.10644 -17.08233 -16.85779 -16.52762 -15.93237 -15.69627 -15.44776 -15.07183 -14.49541 -14.10545 -13.88142 -13.71458 -13.62901 -13.17065 -12.92732 -12.77491 -12.65027 -12.58528 -12.35149 -12.24589 -11.93134 -11.79354 -11.64767 -11.56693 -11.42231 -11.11613 -10.91012 -10.70801 -10.53673 -10.44137 -10.13619 -10.03052 -9.67886 -9.07130 -8.62481 -8.40515 -8.27148 -8.15251 -7.64894 -6.22095 -3.91235 2.10188 2.17641 2.23052 2.75898 3.34403 3.51004 3.51785 3.57317 3.72454 4.59255 4.60116 4.67521 4.69053 4.92877 5.09446 5.19617 5.33350 5.40820 5.47076 5.54652 5.58367 5.59281 5.62474 5.69206 5.74882 5.80507 5.92308 5.96271 6.04306 6.08703 6.15142 6.30480 6.35704 6.40513 6.63496 6.74893 6.80463 6.91870 7.19345 7.21472 7.36320 7.71658 7.76165 7.78567 7.84837 8.22209 8.51688 8.89446 8.97814 9.77448 11.17292 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.012509 B = 0.003993 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.873341 B = 7010.631946 C = 8307.178433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.101 4.101 3 H 0.115 0.885 4 C 0.134 3.866 5 N -0.632 5.632 6 C 0.077 3.923 7 C 0.514 3.486 8 O -0.493 6.493 9 C -0.113 4.113 10 C 0.072 3.928 11 H 0.049 0.951 12 C -0.567 4.567 13 H 0.045 0.955 14 C 0.033 3.967 15 N -0.906 5.906 16 Si 1.059 2.941 17 H -0.284 1.284 18 H -0.288 1.288 19 H -0.290 1.290 20 C -0.032 4.032 21 C -0.106 4.106 22 C -0.130 4.130 23 C -0.152 4.152 24 C -0.125 4.125 25 C -0.130 4.130 26 C 0.489 3.511 27 O -0.514 6.514 28 O -0.516 6.516 29 H 0.077 0.923 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.052 0.948 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.080 0.920 39 H 0.271 0.729 40 H 0.115 0.885 41 H 0.107 0.893 42 H 0.106 0.894 43 H 0.107 0.893 44 H 0.110 0.890 45 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.184 -5.909 4.929 17.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.122 4.122 3 H 0.133 0.867 4 C 0.010 3.990 5 N -0.369 5.369 6 C -0.067 4.067 7 C 0.302 3.698 8 O -0.363 6.363 9 C -0.153 4.153 10 C 0.053 3.947 11 H 0.067 0.933 12 C -0.605 4.605 13 H 0.063 0.937 14 C -0.173 4.173 15 N -0.541 5.541 16 Si 0.888 3.112 17 H -0.209 1.209 18 H -0.215 1.215 19 H -0.217 1.217 20 C -0.033 4.033 21 C -0.125 4.125 22 C -0.148 4.148 23 C -0.170 4.170 24 C -0.143 4.143 25 C -0.148 4.148 26 C 0.331 3.669 27 O -0.402 6.402 28 O -0.328 6.328 29 H 0.096 0.904 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.112 0.888 34 H 0.071 0.929 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.098 0.902 39 H 0.082 0.918 40 H 0.133 0.867 41 H 0.125 0.875 42 H 0.124 0.876 43 H 0.125 0.875 44 H 0.128 0.872 45 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -12.865 -5.742 4.918 14.922 hybrid contribution -1.396 -0.424 0.321 1.494 sum -14.261 -6.167 5.240 16.396 Atomic orbital electron populations 1.21876 0.92036 1.02572 1.03682 1.21502 0.98396 1.02356 0.89939 0.86715 1.21094 1.02461 0.93402 0.82028 1.48017 1.20773 1.39526 1.28610 1.21857 0.85277 1.01876 0.97658 1.20981 0.83578 0.79294 0.85899 1.90761 1.21800 1.64600 1.59162 1.21689 0.99906 0.98890 0.94824 1.17883 0.92574 0.91932 0.92339 0.93279 1.21521 0.91037 1.02570 1.45332 0.93691 1.25559 1.01346 0.96855 0.93526 1.70739 1.32960 1.07693 1.42708 0.83705 0.76138 0.75417 0.75968 1.20939 1.21465 1.21710 1.20843 0.91224 0.94189 0.97045 1.20927 0.99122 0.99774 0.92628 1.21018 1.01321 0.94084 0.98389 1.20826 1.04169 0.95249 0.96802 1.20965 1.00928 0.98781 0.93607 1.21071 1.00960 0.94180 0.98632 1.23427 0.76650 0.82223 0.84636 1.90731 1.35733 1.26435 1.87276 1.84540 1.72279 1.59107 1.16881 0.90419 0.92199 0.91366 0.90274 0.88779 0.92929 0.91309 0.90814 0.91588 0.90183 0.91819 0.86696 0.87454 0.87591 0.87463 0.87182 0.73359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 8.11 37.16 0.30 -0.98 16 2 C -0.10 -1.23 3.03 -91.77 -0.28 -1.51 16 3 H 0.11 1.59 8.14 -51.93 -0.42 1.17 16 4 C 0.13 1.88 4.25 -4.04 -0.02 1.86 16 5 N -0.63 -9.19 2.70 -181.57 -0.49 -9.68 16 6 C 0.08 0.78 9.31 59.85 0.56 1.33 16 7 C 0.51 10.01 7.43 -10.99 -0.08 9.93 16 8 O -0.49 -12.11 14.60 5.55 0.08 -12.03 16 9 C -0.11 -2.13 3.51 -27.88 -0.10 -2.22 16 10 C 0.07 1.69 1.23 -92.92 -0.11 1.58 16 11 H 0.05 1.31 6.59 -51.93 -0.34 0.97 16 12 C -0.57 -15.35 6.35 -34.44 -0.22 -15.56 16 13 H 0.04 1.23 7.82 -52.48 -0.41 0.82 16 14 C 0.03 0.94 5.45 -17.83 -0.10 0.85 16 15 N -0.91 -27.65 13.56 55.43 0.75 -26.90 16 16 Si 1.06 26.46 29.91 -169.99 -5.08 21.38 16 17 H -0.28 -7.14 7.11 56.52 0.40 -6.73 16 18 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 C -0.03 -0.70 4.53 -104.62 -0.47 -1.18 16 21 C -0.11 -2.14 8.90 -39.58 -0.35 -2.49 16 22 C -0.13 -2.30 10.05 -39.58 -0.40 -2.70 16 23 C -0.15 -2.60 10.05 -39.58 -0.40 -3.00 16 24 C -0.12 -2.25 10.05 -39.58 -0.40 -2.65 16 25 C -0.13 -2.67 9.18 -39.58 -0.36 -3.04 16 26 C 0.49 6.11 7.63 36.00 0.27 6.39 16 27 O -0.51 -7.92 16.68 -18.76 -0.31 -8.23 16 28 O -0.52 -4.97 13.33 -39.25 -0.52 -5.50 16 29 H 0.08 0.66 5.89 -51.93 -0.31 0.35 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.57 8.11 -51.93 -0.42 0.14 16 32 H 0.08 0.95 8.07 -51.93 -0.42 0.53 16 33 H 0.09 1.65 7.23 -51.93 -0.38 1.27 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.52 5.98 -51.93 -0.31 0.21 16 36 H 0.07 0.70 6.44 -51.93 -0.33 0.37 16 37 H 0.07 1.06 7.40 -51.93 -0.38 0.68 16 38 H 0.08 1.42 7.93 -51.93 -0.41 1.01 16 39 H 0.27 8.11 6.24 -40.82 -0.25 7.85 16 40 H 0.12 2.26 7.85 -52.48 -0.41 1.85 16 41 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 42 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 43 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 44 H 0.11 2.23 7.95 -52.49 -0.42 1.81 16 45 H 0.41 2.17 9.10 45.56 0.41 2.58 16 LS Contribution 372.34 15.07 5.61 5.61 Total: -1.00 -35.64 372.34 -7.84 -43.48 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -5.72 Total: 5.29 kcal Atomic # 6 Polarization: -11.25 SS G_CDS: -2.15 Total: -13.41 kcal Atomic # 7 Polarization: -36.84 SS G_CDS: 0.26 Total: -36.58 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: -0.75 Total: -25.76 kcal Atomic # 14 Polarization: 26.46 SS G_CDS: -5.08 Total: 21.38 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.64 -7.84 -43.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589019758.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.474 kcal (2) G-P(sol) polarization free energy of solvation -35.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds