Wall clock time and date at job start Sat Apr 11 2020 00:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47397 * 2 1 4 4 C 1.53001 * 109.47312 * 240.00301 * 2 1 3 5 5 N 1.46502 * 109.47396 * 64.99386 * 4 2 1 6 6 C 1.46499 * 120.00349 * 270.00931 * 5 4 2 7 7 C 1.34777 * 119.99559 * 89.99707 * 5 4 2 8 8 O 1.21283 * 120.00046 * 0.02562 * 7 5 4 9 9 C 1.50698 * 119.99686 * 180.02562 * 7 5 4 10 10 C 1.53005 * 109.46990 * 180.02562 * 9 7 5 11 11 H 1.08994 * 109.46934 * 305.97546 * 10 9 7 12 12 C 1.50700 * 109.47299 * 65.97885 * 10 9 7 13 13 H 1.08008 * 119.99531 * 26.90748 * 12 10 9 14 14 C 1.37869 * 120.00160 * 206.90965 * 12 10 9 15 15 N 1.31508 * 120.00032 * 353.27812 * 14 12 10 16 16 Si 1.86806 * 120.00073 * 173.54969 * 14 12 10 17 17 H 1.48497 * 109.46895 * 179.72442 * 16 14 12 18 18 H 1.48495 * 109.46957 * 299.72695 * 16 14 12 19 19 H 1.48501 * 109.46761 * 59.72686 * 16 14 12 20 20 C 1.50705 * 109.47056 * 185.97689 * 10 9 7 21 21 C 1.38237 * 120.00118 * 294.44966 * 20 10 9 22 22 C 1.38237 * 119.99818 * 179.78603 * 21 20 10 23 23 C 1.38236 * 120.00003 * 0.44191 * 22 21 20 24 24 C 1.38236 * 119.99991 * 359.81061 * 23 22 21 25 25 C 1.38228 * 119.99825 * 114.71859 * 20 10 9 26 26 C 1.50694 * 109.47387 * 120.00032 * 2 1 3 27 27 O 1.20833 * 120.00168 * 120.00556 * 26 2 1 28 28 O 1.34228 * 120.00455 * 300.00019 * 26 2 1 29 29 H 1.08997 * 109.47331 * 59.99954 * 1 2 3 30 30 H 1.09004 * 109.46682 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46897 * 299.99498 * 1 2 3 32 32 H 1.08999 * 109.46881 * 304.99680 * 4 2 1 33 33 H 1.08999 * 109.47345 * 185.00077 * 4 2 1 34 34 H 1.08998 * 109.46580 * 270.00058 * 6 5 4 35 35 H 1.09007 * 109.46909 * 29.99033 * 6 5 4 36 36 H 1.08999 * 109.47455 * 149.99624 * 6 5 4 37 37 H 1.09000 * 109.47229 * 60.00363 * 9 7 5 38 38 H 1.09003 * 109.47630 * 300.00294 * 9 7 5 39 39 H 0.97008 * 120.00303 * 354.69126 * 15 14 12 40 40 H 1.08005 * 119.99967 * 359.97438 * 21 20 10 41 41 H 1.07999 * 119.99448 * 180.27078 * 22 21 20 42 42 H 1.07997 * 119.99991 * 179.83259 * 23 22 21 43 43 H 1.07993 * 119.99965 * 180.02562 * 24 23 22 44 44 H 1.07999 * 120.00249 * 359.97438 * 25 20 10 45 45 H 0.96695 * 117.00820 * 179.97438 * 28 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.6524 0.0354 -2.4424 6 6 0.3745 -0.2423 -3.1028 7 6 2.4714 0.9870 -2.9324 8 8 3.5295 1.2167 -2.3859 9 6 2.0724 1.7656 -4.1595 10 6 3.1704 2.7745 -4.5026 11 1 3.3824 3.3917 -3.6296 12 6 4.4195 2.0377 -4.9123 13 1 4.3469 1.0502 -5.3438 14 6 5.6548 2.6240 -4.7363 15 7 5.7384 3.8738 -4.3356 16 14 7.2098 1.6456 -5.0742 17 1 8.3974 2.4994 -4.8176 18 1 7.2514 0.4587 -4.1828 19 1 7.2167 1.2010 -6.4911 20 6 2.7095 3.6518 -5.6380 21 6 2.4907 3.1053 -6.8888 22 6 2.0636 3.9092 -7.9292 23 6 1.8642 5.2612 -7.7210 24 6 2.0880 5.8085 -6.4715 25 6 2.5108 5.0038 -5.4301 26 6 2.0324 -0.7104 1.2304 27 8 2.7272 -1.6927 1.1195 28 8 1.7082 -0.2519 2.4496 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.6055 -1.7197 -1.2952 33 1 3.1263 -0.7994 -1.2056 34 1 0.5170 -1.0127 -3.8606 35 1 -0.3485 -0.5886 -2.3641 36 1 0.0041 0.6677 -3.5748 37 1 1.1395 2.2951 -3.9663 38 1 1.9348 1.0804 -4.9959 39 1 4.9337 4.4067 -4.2380 40 1 2.6505 2.0498 -7.0525 41 1 1.8885 3.4815 -8.9053 42 1 1.5331 5.8897 -8.5345 43 1 1.9317 6.8647 -6.3088 44 1 2.6855 5.4314 -4.4539 45 1 2.0536 -0.7410 3.2088 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589019758.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:02:00 Heat of formation + Delta-G solvation = -132.916938 kcal Electronic energy + Delta-G solvation = -27230.575153 eV Core-core repulsion = 23404.747149 eV Total energy + Delta-G solvation = -3825.828004 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.64739 -40.84164 -39.87409 -37.49511 -37.01589 -36.04169 -34.36385 -33.16965 -31.59483 -30.55924 -28.81524 -27.41429 -26.20959 -25.56188 -24.33039 -23.17147 -21.94222 -21.38057 -19.96245 -19.11850 -18.75181 -18.10763 -17.98922 -17.23924 -16.92631 -16.73514 -16.28917 -15.91678 -15.66848 -15.62076 -15.05895 -14.88028 -14.50351 -14.20526 -14.06609 -13.98262 -13.91496 -13.55166 -13.50928 -13.35091 -13.16393 -12.77246 -12.69450 -12.64167 -12.60394 -12.33073 -12.19845 -12.07072 -11.94765 -11.70259 -11.55836 -11.47442 -10.74850 -10.56206 -10.35600 -9.63452 -9.62322 -9.25900 -8.44411 -6.11069 0.69183 0.75001 1.09839 1.45941 1.56337 1.71812 1.73400 1.87314 2.39703 2.60716 3.11890 3.35583 3.58569 3.67893 3.95652 4.05462 4.14733 4.28799 4.29800 4.33003 4.34043 4.45289 4.48684 4.55419 4.62589 4.64262 4.79852 4.82043 4.84602 4.87661 4.93066 4.96841 5.09607 5.23972 5.25749 5.41463 5.44210 5.50978 5.63337 5.76189 5.83459 5.95411 6.24767 6.31682 6.40449 6.48629 6.78708 6.90651 7.43396 7.63416 8.95873 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.012509 B = 0.003993 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.873341 B = 7010.631946 C = 8307.178433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.099 4.099 3 H 0.092 0.908 4 C 0.135 3.865 5 N -0.619 5.619 6 C 0.066 3.934 7 C 0.509 3.491 8 O -0.560 6.560 9 C -0.104 4.104 10 C 0.074 3.926 11 H 0.004 0.996 12 C -0.555 4.555 13 H 0.037 0.963 14 C -0.024 4.024 15 N -0.944 5.944 16 Si 1.093 2.907 17 H -0.288 1.288 18 H -0.290 1.290 19 H -0.265 1.265 20 C -0.054 4.054 21 C -0.122 4.122 22 C -0.124 4.124 23 C -0.144 4.144 24 C -0.125 4.125 25 C -0.152 4.152 26 C 0.495 3.505 27 O -0.549 6.549 28 O -0.507 6.507 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.106 0.894 33 H 0.049 0.951 34 H 0.065 0.935 35 H 0.103 0.897 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.261 0.739 40 H 0.113 0.887 41 H 0.142 0.858 42 H 0.146 0.854 43 H 0.135 0.865 44 H 0.095 0.905 45 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.320 -6.517 3.242 19.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.120 4.120 3 H 0.110 0.890 4 C 0.011 3.989 5 N -0.354 5.354 6 C -0.075 4.075 7 C 0.298 3.702 8 O -0.436 6.436 9 C -0.144 4.144 10 C 0.054 3.946 11 H 0.022 0.978 12 C -0.593 4.593 13 H 0.055 0.945 14 C -0.223 4.223 15 N -0.582 5.582 16 Si 0.918 3.082 17 H -0.214 1.214 18 H -0.216 1.216 19 H -0.190 1.190 20 C -0.055 4.055 21 C -0.140 4.140 22 C -0.142 4.142 23 C -0.162 4.162 24 C -0.143 4.143 25 C -0.170 4.170 26 C 0.338 3.662 27 O -0.439 6.439 28 O -0.321 6.321 29 H 0.103 0.897 30 H 0.098 0.902 31 H 0.096 0.904 32 H 0.124 0.876 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.121 0.879 36 H 0.102 0.898 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.071 0.929 40 H 0.131 0.869 41 H 0.160 0.840 42 H 0.164 0.836 43 H 0.153 0.847 44 H 0.113 0.887 45 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges -16.081 -6.387 3.236 17.603 hybrid contribution -0.570 -0.244 0.888 1.083 sum -16.652 -6.631 4.123 18.391 Atomic orbital electron populations 1.21881 0.88781 1.04125 1.04583 1.21405 1.00946 1.00483 0.89128 0.89030 1.21091 1.00180 0.94865 0.82759 1.47942 1.21466 1.37551 1.28421 1.22232 0.83435 1.02972 0.98837 1.21156 0.83231 0.79972 0.85813 1.90737 1.24856 1.66923 1.61133 1.21562 0.99438 0.98279 0.95120 1.17704 0.93035 0.92413 0.91414 0.97810 1.21782 0.92451 1.01957 1.43118 0.94468 1.26647 1.04495 0.97181 0.93949 1.70814 1.32488 1.08763 1.46130 0.83254 0.73542 0.74257 0.77134 1.21401 1.21629 1.19016 1.20592 0.93514 0.94406 0.96963 1.21002 1.00137 1.00196 0.92656 1.21402 0.99532 0.94280 0.99015 1.21305 1.02202 0.95459 0.97213 1.21296 0.99725 0.99931 0.93335 1.21120 1.02422 0.94274 0.99219 1.23410 0.75816 0.81514 0.85466 1.90723 1.37238 1.28100 1.87861 1.84487 1.71818 1.59019 1.16756 0.89651 0.90219 0.90407 0.87574 0.93224 0.91657 0.87877 0.89808 0.88580 0.88651 0.92863 0.86895 0.83998 0.83602 0.84741 0.88671 0.70996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 8.11 71.98 0.58 -1.49 16 2 C -0.10 -2.39 3.03 -11.54 -0.04 -2.42 16 3 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 4 C 0.13 3.80 4.25 86.38 0.37 4.16 16 5 N -0.62 -17.70 2.70 -846.75 -2.28 -19.99 16 6 C 0.07 1.15 9.31 127.77 1.19 2.34 16 7 C 0.51 20.48 7.43 87.66 0.65 21.13 16 8 O -0.56 -29.54 14.60 -3.04 -0.04 -29.58 16 9 C -0.10 -3.96 3.51 29.85 0.10 -3.85 16 10 C 0.07 3.61 1.23 -12.28 -0.02 3.60 16 11 H 0.00 0.21 6.59 -2.39 -0.02 0.20 16 12 C -0.56 -31.23 6.35 25.60 0.16 -31.06 16 13 H 0.04 2.09 7.82 -2.91 -0.02 2.06 16 14 C -0.02 -1.45 5.45 84.65 0.46 -0.99 16 15 N -0.94 -60.70 13.56 21.44 0.29 -60.41 16 16 Si 1.09 55.13 29.91 68.60 2.05 57.19 16 17 H -0.29 -14.61 7.11 99.48 0.71 -13.91 16 18 H -0.29 -14.49 7.11 99.48 0.71 -13.79 16 19 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 20 C -0.05 -2.39 4.53 -19.87 -0.09 -2.48 16 21 C -0.12 -4.75 8.90 22.27 0.20 -4.55 16 22 C -0.12 -3.99 10.05 22.27 0.22 -3.77 16 23 C -0.14 -4.36 10.05 22.27 0.22 -4.13 16 24 C -0.12 -4.25 10.05 22.27 0.22 -4.03 16 25 C -0.15 -6.34 9.18 22.27 0.20 -6.13 16 26 C 0.49 12.25 7.63 71.23 0.54 12.79 16 27 O -0.55 -17.12 16.68 21.94 0.37 -16.75 16 28 O -0.51 -9.16 13.33 -51.40 -0.68 -9.84 16 29 H 0.08 1.17 5.89 -2.39 -0.01 1.16 16 30 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.08 1.07 8.11 -2.39 -0.02 1.05 16 32 H 0.11 2.39 8.07 -2.39 -0.02 2.37 16 33 H 0.05 1.86 7.23 -2.39 -0.02 1.84 16 34 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.10 1.12 5.98 -2.38 -0.01 1.10 16 36 H 0.08 1.32 6.44 -2.39 -0.02 1.31 16 37 H 0.10 3.02 7.40 -2.39 -0.02 3.00 16 38 H 0.10 3.30 7.93 -2.39 -0.02 3.29 16 39 H 0.26 16.71 6.24 -92.70 -0.58 16.13 16 40 H 0.11 4.34 7.85 -2.91 -0.02 4.32 16 41 H 0.14 3.55 8.06 -2.91 -0.02 3.52 16 42 H 0.15 3.29 8.06 -2.91 -0.02 3.27 16 43 H 0.13 3.76 8.06 -2.91 -0.02 3.74 16 44 H 0.10 4.11 7.95 -2.91 -0.02 4.09 16 45 H 0.43 3.93 9.10 -74.06 -0.67 3.26 16 Total: -1.00 -84.31 372.34 5.21 -79.10 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: 0.52 Total: 21.17 kcal Atomic # 6 Polarization: -25.89 SS G_CDS: 5.00 Total: -20.89 kcal Atomic # 7 Polarization: -78.40 SS G_CDS: -1.99 Total: -80.40 kcal Atomic # 8 Polarization: -55.81 SS G_CDS: -0.36 Total: -56.17 kcal Atomic # 14 Polarization: 55.13 SS G_CDS: 2.05 Total: 57.19 kcal Total: -84.31 5.21 -79.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589019758.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.815 kcal (2) G-P(sol) polarization free energy of solvation -84.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds