Wall clock time and date at job start Sat Apr 11 2020 00:02:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.53028 * 2 1 4 4 C 1.53032 * 109.50716 * 239.89996 * 2 1 3 5 5 N 1.46845 * 109.52251 * 299.23826 * 4 2 1 6 6 C 1.46904 * 111.00303 * 174.15963 * 5 4 2 7 7 C 1.50703 * 109.47128 * 190.25521 * 6 5 4 8 8 C 1.38294 * 119.92983 * 90.00153 * 7 6 5 9 9 C 1.38096 * 120.06969 * 179.97438 * 8 7 6 10 10 C 1.38887 * 119.92909 * 359.97438 * 9 8 7 11 11 O 1.35746 * 120.06604 * 180.02562 * 10 9 8 12 12 C 1.34833 * 117.00531 * 5.54199 * 11 10 9 13 13 H 1.07995 * 119.99437 * 354.94399 * 12 11 10 14 14 C 1.38650 * 120.00178 * 174.66237 * 12 11 10 15 15 N 1.31559 * 119.99887 * 180.27491 * 14 12 11 16 16 Si 1.86798 * 120.00128 * 0.27972 * 14 12 11 17 17 H 1.48503 * 109.47411 * 89.99643 * 16 14 12 18 18 H 1.48499 * 109.47326 * 209.99387 * 16 14 12 19 19 H 1.48499 * 109.47106 * 329.99596 * 16 14 12 20 20 C 1.38871 * 119.86145 * 0.28182 * 10 9 8 21 21 C 1.38107 * 119.92971 * 359.46603 * 20 10 9 22 22 C 1.46851 * 111.19741 * 298.26024 * 5 4 2 23 23 C 1.53033 * 109.52779 * 61.73966 * 22 5 4 24 24 C 1.53117 * 109.50253 * 120.09133 * 2 1 3 25 25 H 1.08998 * 109.57676 * 182.22520 * 24 2 1 26 26 C 1.50698 * 109.52673 * 302.38634 * 24 2 1 27 27 O 1.20831 * 119.99755 * 359.68416 * 26 24 2 28 28 O 1.34226 * 120.00392 * 179.67894 * 26 24 2 29 29 H 1.09000 * 109.47524 * 299.90533 * 1 2 3 30 30 H 1.08996 * 109.46892 * 59.90704 * 1 2 3 31 31 H 1.09004 * 109.46638 * 179.90376 * 1 2 3 32 32 H 1.08994 * 109.46327 * 179.22202 * 4 2 1 33 33 H 1.08998 * 109.46168 * 59.25257 * 4 2 1 34 34 H 1.08999 * 109.46946 * 70.25640 * 6 5 4 35 35 H 1.08993 * 109.46963 * 310.25702 * 6 5 4 36 36 H 1.08006 * 119.96631 * 0.02562 * 8 7 6 37 37 H 1.07998 * 120.03684 * 179.97438 * 9 8 7 38 38 H 0.97000 * 119.99828 * 180.02562 * 15 14 12 39 39 H 1.07995 * 120.03647 * 179.71990 * 20 10 9 40 40 H 1.07999 * 119.96577 * 180.27627 * 21 20 10 41 41 H 1.09005 * 109.46111 * 181.76263 * 22 5 4 42 42 H 1.09002 * 109.46172 * 301.72129 * 22 5 4 43 43 H 1.09004 * 109.50125 * 60.75967 * 23 22 5 44 44 H 1.08995 * 109.50424 * 180.84107 * 23 22 5 45 45 H 0.96696 * 117.00574 * 179.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8944 1.0273 0.0000 4 6 2.0410 -0.7234 -1.2480 5 7 1.5677 -2.1135 -1.2378 6 6 1.9225 -2.7997 -2.4873 7 6 1.2124 -4.1274 -2.5503 8 6 -0.0405 -4.2130 -3.1295 9 6 -0.6936 -5.4283 -3.1893 10 6 -0.0906 -6.5654 -2.6675 11 8 -0.7299 -7.7615 -2.7253 12 6 -1.8949 -7.8010 -3.4028 13 1 -2.3201 -6.8908 -3.7991 14 6 -2.5440 -9.0109 -3.5959 15 7 -3.6780 -9.0500 -4.2617 16 14 -1.8085 -10.5852 -2.9105 17 1 -2.3208 -10.8134 -1.5354 18 1 -2.1912 -11.7287 -3.7772 19 1 -0.3288 -10.4653 -2.8739 20 6 1.1653 -6.4752 -2.0818 21 6 1.8154 -5.2578 -2.0297 22 6 2.0847 -2.8419 -0.0722 23 6 1.5750 -2.1817 1.2109 24 6 2.0412 -0.7237 1.2488 25 1 3.1305 -0.6900 1.2702 26 6 1.4923 -0.0513 2.4807 27 8 0.7709 0.9120 2.3725 28 8 1.8045 -0.5226 3.6981 29 1 -0.3634 0.5123 0.8908 30 1 -0.3633 0.5153 -0.8891 31 1 -0.3633 -1.0277 -0.0017 32 1 3.1309 -0.7109 -1.2543 33 1 1.6670 -0.2190 -2.1389 34 1 2.9998 -2.9620 -2.5194 35 1 1.6220 -2.1862 -3.3366 36 1 -0.5084 -3.3286 -3.5363 37 1 -1.6722 -5.4944 -3.6414 38 1 -4.1323 -9.8964 -4.3964 39 1 1.6348 -7.3567 -1.6711 40 1 2.7941 -5.1878 -1.5783 41 1 1.7425 -3.8762 -0.1092 42 1 3.1744 -2.8196 -0.0840 43 1 0.4857 -2.2160 1.2299 44 1 1.9710 -2.7136 2.0759 45 1 1.4288 -0.0580 4.4584 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589398690.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:02:03 Heat of formation + Delta-G solvation = -90.769626 kcal Electronic energy + Delta-G solvation = -26785.309985 eV Core-core repulsion = 22961.309626 eV Total energy + Delta-G solvation = -3824.000359 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.05496 -39.48644 -38.77005 -36.90202 -36.37305 -34.20937 -32.38307 -31.88819 -30.32248 -29.92322 -27.54942 -26.37578 -25.07790 -23.58663 -22.97296 -22.09847 -21.57729 -20.27912 -18.90505 -18.30685 -17.87670 -17.26496 -17.03276 -16.32165 -15.62472 -15.32402 -15.07667 -14.60302 -14.45058 -14.08896 -13.96016 -13.81327 -13.64631 -13.59374 -13.40247 -12.91500 -12.66353 -12.48262 -12.24556 -12.07288 -11.81311 -11.75673 -11.62706 -11.46594 -11.23295 -11.09231 -10.85727 -10.79550 -10.74512 -10.63602 -10.47076 -10.16755 -10.11788 -9.38371 -8.87407 -8.30749 -8.22277 -7.31528 -6.42021 -4.08707 1.93040 2.11880 2.17892 2.76286 3.22031 3.24803 3.39260 3.88832 4.23016 4.26928 4.47612 4.56266 4.70502 4.84074 4.90520 5.04518 5.07357 5.11222 5.21302 5.24774 5.31572 5.43256 5.46003 5.57215 5.62571 5.65898 5.71825 5.75953 5.80354 5.93909 5.96408 6.03396 6.10935 6.13981 6.30235 6.33826 6.55137 6.56481 6.78836 6.97325 7.04007 7.14864 7.26736 7.34001 7.61326 7.63716 7.80251 8.03581 8.93245 9.55728 10.65659 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.020741 B = 0.002642 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.684002 B =10594.211851 C =10874.747205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.069 4.069 3 H 0.077 0.923 4 C 0.061 3.939 5 N -0.530 5.530 6 C 0.113 3.887 7 C -0.170 4.170 8 C -0.050 4.050 9 C -0.222 4.222 10 C 0.161 3.839 11 O -0.218 6.218 12 C -0.389 4.389 13 H 0.107 0.893 14 C 0.063 3.937 15 N -0.880 5.880 16 Si 0.905 3.095 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.260 1.260 20 C -0.193 4.193 21 C -0.072 4.072 22 C 0.054 3.946 23 C -0.109 4.109 24 C -0.077 4.077 25 H 0.103 0.897 26 C 0.483 3.517 27 O -0.509 6.509 28 O -0.517 6.517 29 H 0.072 0.928 30 H 0.051 0.949 31 H 0.069 0.931 32 H 0.031 0.969 33 H 0.080 0.920 34 H 0.033 0.967 35 H 0.075 0.925 36 H 0.109 0.891 37 H 0.132 0.868 38 H 0.279 0.721 39 H 0.115 0.885 40 H 0.109 0.891 41 H 0.093 0.907 42 H 0.032 0.968 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.746 16.671 10.508 24.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.088 4.088 3 H 0.095 0.905 4 C -0.067 4.067 5 N -0.254 5.254 6 C -0.014 4.014 7 C -0.172 4.172 8 C -0.069 4.069 9 C -0.241 4.241 10 C 0.109 3.891 11 O -0.123 6.123 12 C -0.464 4.464 13 H 0.124 0.876 14 C -0.140 4.140 15 N -0.518 5.518 16 Si 0.731 3.269 17 H -0.199 1.199 18 H -0.208 1.208 19 H -0.184 1.184 20 C -0.213 4.213 21 C -0.091 4.091 22 C -0.074 4.074 23 C -0.147 4.147 24 C -0.096 4.096 25 H 0.121 0.879 26 C 0.326 3.674 27 O -0.397 6.397 28 O -0.329 6.329 29 H 0.091 0.909 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.050 0.950 33 H 0.099 0.901 34 H 0.051 0.949 35 H 0.094 0.906 36 H 0.128 0.872 37 H 0.150 0.850 38 H 0.089 0.911 39 H 0.133 0.867 40 H 0.127 0.873 41 H 0.111 0.889 42 H 0.050 0.950 43 H 0.100 0.900 44 H 0.097 0.903 45 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 13.074 16.374 10.164 23.288 hybrid contribution 0.683 -0.333 0.631 0.987 sum 13.757 16.041 10.794 23.729 Atomic orbital electron populations 1.22061 0.93451 1.03233 1.02559 1.21036 0.98196 0.98112 0.91491 0.90473 1.22115 0.96962 0.89642 0.98027 1.61940 1.59978 1.01105 1.02414 1.20792 0.96426 0.92904 0.91229 1.19119 0.97044 0.93548 1.07456 1.20611 0.93402 0.96352 0.96522 1.21284 1.02572 0.92444 1.07802 1.19135 0.91005 0.85738 0.93220 1.83566 1.35223 1.27709 1.65810 1.20774 0.95416 0.97412 1.32838 0.87602 1.24470 0.95227 0.98538 0.95776 1.69649 1.15429 1.27908 1.38784 0.86180 0.80684 0.81099 0.78935 1.19886 1.20837 1.18364 1.20156 0.94591 0.98090 1.08438 1.20476 0.98286 0.91775 0.98530 1.22146 0.96612 0.99408 0.89185 1.21645 1.02908 0.91724 0.98377 1.21201 1.01730 0.97184 0.89461 0.87884 1.23578 0.77550 0.81594 0.84674 1.90656 1.34959 1.27108 1.86937 1.84554 1.71081 1.60233 1.17002 0.90931 0.92973 0.91229 0.95049 0.90124 0.94859 0.90646 0.87246 0.85037 0.91052 0.86690 0.87344 0.88858 0.95028 0.90008 0.90328 0.73354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 8.40 37.16 0.31 -1.42 16 2 C -0.07 -0.65 2.42 -90.54 -0.22 -0.87 16 3 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 4 C 0.06 0.56 4.90 -3.84 -0.02 0.54 16 5 N -0.53 -5.96 3.93 -236.12 -0.93 -6.88 16 6 C 0.11 1.37 5.12 -4.97 -0.03 1.34 16 7 C -0.17 -2.63 4.90 -104.58 -0.51 -3.15 16 8 C -0.05 -0.88 9.69 -39.61 -0.38 -1.26 16 9 C -0.22 -4.69 9.17 -39.39 -0.36 -5.05 16 10 C 0.16 3.64 6.65 -39.11 -0.26 3.38 16 11 O -0.22 -5.70 8.59 0.05 0.00 -5.70 16 12 C -0.39 -10.89 9.95 30.88 0.31 -10.58 16 13 H 0.11 3.03 5.44 -52.49 -0.29 2.75 16 14 C 0.06 1.76 5.49 -17.52 -0.10 1.67 16 15 N -0.88 -25.37 13.96 55.48 0.77 -24.60 16 16 Si 0.91 21.56 28.62 -169.99 -4.86 16.69 16 17 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.26 -6.18 7.11 56.52 0.40 -5.78 16 20 C -0.19 -3.69 9.99 -39.40 -0.39 -4.08 16 21 C -0.07 -1.14 7.87 -39.61 -0.31 -1.45 16 22 C 0.05 0.57 5.16 -3.83 -0.02 0.55 16 23 C -0.11 -1.04 4.95 -26.65 -0.13 -1.17 16 24 C -0.08 -0.67 2.48 -91.65 -0.23 -0.90 16 25 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 26 C 0.48 4.60 7.33 36.00 0.26 4.86 16 27 O -0.51 -6.14 14.29 -18.75 -0.27 -6.41 16 28 O -0.52 -3.80 13.35 -39.25 -0.52 -4.32 16 29 H 0.07 0.89 5.34 -51.93 -0.28 0.61 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.86 6.01 -51.93 -0.31 0.55 16 32 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.08 0.72 8.01 -51.93 -0.42 0.31 16 34 H 0.03 0.37 8.06 -51.93 -0.42 -0.05 16 35 H 0.08 0.86 7.92 -51.93 -0.41 0.45 16 36 H 0.11 1.71 8.06 -52.48 -0.42 1.29 16 37 H 0.13 2.96 5.64 -52.49 -0.30 2.66 16 38 H 0.28 7.44 8.31 -40.82 -0.34 7.10 16 39 H 0.12 2.06 8.06 -52.49 -0.42 1.64 16 40 H 0.11 1.41 7.95 -52.49 -0.42 1.00 16 41 H 0.09 1.15 5.75 -51.93 -0.30 0.85 16 42 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.08 0.90 6.58 -51.93 -0.34 0.56 16 44 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.41 1.36 9.10 45.56 0.41 1.78 16 LS Contribution 357.60 15.07 5.39 5.39 Total: -1.00 -31.00 357.60 -8.07 -39.07 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -5.58 Total: 4.33 kcal Atomic # 6 Polarization: -15.50 SS G_CDS: -2.08 Total: -17.58 kcal Atomic # 7 Polarization: -31.33 SS G_CDS: -0.15 Total: -31.48 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: -0.79 Total: -16.43 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.86 Total: 16.69 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.00 -8.07 -39.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589398690.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.696 kcal (2) G-P(sol) polarization free energy of solvation -31.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds