Wall clock time and date at job start Sat Apr 11 2020 00:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.53028 * 2 1 4 4 C 1.53032 * 109.50716 * 239.89996 * 2 1 3 5 5 N 1.46845 * 109.52251 * 299.23826 * 4 2 1 6 6 C 1.46904 * 111.00303 * 174.15963 * 5 4 2 7 7 C 1.50703 * 109.47128 * 190.25521 * 6 5 4 8 8 C 1.38294 * 119.92983 * 90.00153 * 7 6 5 9 9 C 1.38096 * 120.06969 * 179.97438 * 8 7 6 10 10 C 1.38887 * 119.92909 * 359.97438 * 9 8 7 11 11 O 1.35746 * 120.06604 * 180.02562 * 10 9 8 12 12 C 1.34833 * 117.00531 * 5.54199 * 11 10 9 13 13 H 1.07995 * 119.99437 * 354.94399 * 12 11 10 14 14 C 1.38650 * 120.00178 * 174.66237 * 12 11 10 15 15 N 1.31559 * 119.99887 * 180.27491 * 14 12 11 16 16 Si 1.86798 * 120.00128 * 0.27972 * 14 12 11 17 17 H 1.48503 * 109.47411 * 89.99643 * 16 14 12 18 18 H 1.48499 * 109.47326 * 209.99387 * 16 14 12 19 19 H 1.48499 * 109.47106 * 329.99596 * 16 14 12 20 20 C 1.38871 * 119.86145 * 0.28182 * 10 9 8 21 21 C 1.38107 * 119.92971 * 359.46603 * 20 10 9 22 22 C 1.46851 * 111.19741 * 298.26024 * 5 4 2 23 23 C 1.53033 * 109.52779 * 61.73966 * 22 5 4 24 24 C 1.53117 * 109.50253 * 120.09133 * 2 1 3 25 25 H 1.08998 * 109.57676 * 182.22520 * 24 2 1 26 26 C 1.50698 * 109.52673 * 302.38634 * 24 2 1 27 27 O 1.20831 * 119.99755 * 359.68416 * 26 24 2 28 28 O 1.34226 * 120.00392 * 179.67894 * 26 24 2 29 29 H 1.09000 * 109.47524 * 299.90533 * 1 2 3 30 30 H 1.08996 * 109.46892 * 59.90704 * 1 2 3 31 31 H 1.09004 * 109.46638 * 179.90376 * 1 2 3 32 32 H 1.08994 * 109.46327 * 179.22202 * 4 2 1 33 33 H 1.08998 * 109.46168 * 59.25257 * 4 2 1 34 34 H 1.08999 * 109.46946 * 70.25640 * 6 5 4 35 35 H 1.08993 * 109.46963 * 310.25702 * 6 5 4 36 36 H 1.08006 * 119.96631 * 0.02562 * 8 7 6 37 37 H 1.07998 * 120.03684 * 179.97438 * 9 8 7 38 38 H 0.97000 * 119.99828 * 180.02562 * 15 14 12 39 39 H 1.07995 * 120.03647 * 179.71990 * 20 10 9 40 40 H 1.07999 * 119.96577 * 180.27627 * 21 20 10 41 41 H 1.09005 * 109.46111 * 181.76263 * 22 5 4 42 42 H 1.09002 * 109.46172 * 301.72129 * 22 5 4 43 43 H 1.09004 * 109.50125 * 60.75967 * 23 22 5 44 44 H 1.08995 * 109.50424 * 180.84107 * 23 22 5 45 45 H 0.96696 * 117.00574 * 179.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8944 1.0273 0.0000 4 6 2.0410 -0.7234 -1.2480 5 7 1.5677 -2.1135 -1.2378 6 6 1.9225 -2.7997 -2.4873 7 6 1.2124 -4.1274 -2.5503 8 6 -0.0405 -4.2130 -3.1295 9 6 -0.6936 -5.4283 -3.1893 10 6 -0.0906 -6.5654 -2.6675 11 8 -0.7299 -7.7615 -2.7253 12 6 -1.8949 -7.8010 -3.4028 13 1 -2.3201 -6.8908 -3.7991 14 6 -2.5440 -9.0109 -3.5959 15 7 -3.6780 -9.0500 -4.2617 16 14 -1.8085 -10.5852 -2.9105 17 1 -2.3208 -10.8134 -1.5354 18 1 -2.1912 -11.7287 -3.7772 19 1 -0.3288 -10.4653 -2.8739 20 6 1.1653 -6.4752 -2.0818 21 6 1.8154 -5.2578 -2.0297 22 6 2.0847 -2.8419 -0.0722 23 6 1.5750 -2.1817 1.2109 24 6 2.0412 -0.7237 1.2488 25 1 3.1305 -0.6900 1.2702 26 6 1.4923 -0.0513 2.4807 27 8 0.7709 0.9120 2.3725 28 8 1.8045 -0.5226 3.6981 29 1 -0.3634 0.5123 0.8908 30 1 -0.3633 0.5153 -0.8891 31 1 -0.3633 -1.0277 -0.0017 32 1 3.1309 -0.7109 -1.2543 33 1 1.6670 -0.2190 -2.1389 34 1 2.9998 -2.9620 -2.5194 35 1 1.6220 -2.1862 -3.3366 36 1 -0.5084 -3.3286 -3.5363 37 1 -1.6722 -5.4944 -3.6414 38 1 -4.1323 -9.8964 -4.3964 39 1 1.6348 -7.3567 -1.6711 40 1 2.7941 -5.1878 -1.5783 41 1 1.7425 -3.8762 -0.1092 42 1 3.1744 -2.8196 -0.0840 43 1 0.4857 -2.2160 1.2299 44 1 1.9710 -2.7136 2.0759 45 1 1.4288 -0.0580 4.4584 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589398690.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:02:02 Heat of formation + Delta-G solvation = -110.686414 kcal Electronic energy + Delta-G solvation = -26786.173642 eV Core-core repulsion = 22961.309626 eV Total energy + Delta-G solvation = -3824.864016 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.79546 -40.91632 -39.83878 -38.33348 -37.13311 -35.21977 -34.39189 -32.65863 -31.80221 -31.27460 -28.41316 -27.76166 -26.59926 -24.58950 -23.98886 -23.36842 -22.51366 -21.63650 -19.83892 -19.58343 -19.05923 -18.99460 -17.78632 -17.07725 -16.71198 -16.49041 -16.34713 -15.88001 -15.59608 -15.55525 -15.46426 -15.05942 -14.68295 -14.55825 -14.35639 -14.26186 -14.12438 -14.01516 -13.57265 -13.05285 -12.94461 -12.78723 -12.61032 -12.57092 -12.38846 -12.25626 -12.22217 -12.07448 -11.88773 -11.85810 -11.52017 -11.26998 -11.22442 -10.95599 -10.88397 -9.73795 -9.14787 -8.88768 -8.49017 -6.21529 0.61620 0.67372 1.22050 1.31879 1.36540 1.52263 2.16827 2.28754 2.72278 2.98465 3.15831 3.34652 3.56765 3.75759 3.97059 4.03726 4.11790 4.19423 4.27474 4.34560 4.41395 4.49138 4.51262 4.63111 4.68500 4.71698 4.74554 4.84008 4.88919 4.93631 4.96748 5.02861 5.10122 5.17304 5.29699 5.30157 5.32014 5.42280 5.52699 5.60807 5.77242 5.79783 5.86743 5.94209 6.21145 6.28334 6.33981 6.85533 7.03441 7.60998 8.62863 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.020741 B = 0.002642 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.684002 B =10594.211851 C =10874.747205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.067 4.067 3 H 0.085 0.915 4 C 0.065 3.935 5 N -0.547 5.547 6 C 0.116 3.884 7 C -0.141 4.141 8 C -0.055 4.055 9 C -0.240 4.240 10 C 0.119 3.881 11 O -0.247 6.247 12 C -0.398 4.398 13 H 0.079 0.921 14 C 0.008 3.992 15 N -0.926 5.926 16 Si 0.972 3.028 17 H -0.266 1.266 18 H -0.268 1.268 19 H -0.261 1.261 20 C -0.192 4.192 21 C -0.059 4.059 22 C 0.054 3.946 23 C -0.104 4.104 24 C -0.073 4.073 25 H 0.129 0.871 26 C 0.486 3.514 27 O -0.540 6.540 28 O -0.513 6.513 29 H 0.058 0.942 30 H 0.050 0.950 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.084 0.916 34 H 0.058 0.942 35 H 0.086 0.914 36 H 0.128 0.872 37 H 0.102 0.898 38 H 0.284 0.716 39 H 0.127 0.873 40 H 0.153 0.847 41 H 0.074 0.926 42 H 0.055 0.945 43 H 0.058 0.942 44 H 0.090 0.910 45 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.717 18.068 11.901 27.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.086 4.086 3 H 0.103 0.897 4 C -0.062 4.062 5 N -0.272 5.272 6 C -0.011 4.011 7 C -0.142 4.142 8 C -0.074 4.074 9 C -0.259 4.259 10 C 0.070 3.930 11 O -0.154 6.154 12 C -0.474 4.474 13 H 0.096 0.904 14 C -0.190 4.190 15 N -0.567 5.567 16 Si 0.794 3.206 17 H -0.191 1.191 18 H -0.193 1.193 19 H -0.185 1.185 20 C -0.211 4.211 21 C -0.078 4.078 22 C -0.073 4.073 23 C -0.141 4.141 24 C -0.092 4.092 25 H 0.146 0.854 26 C 0.330 3.670 27 O -0.431 6.431 28 O -0.327 6.327 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.103 0.897 34 H 0.076 0.924 35 H 0.104 0.896 36 H 0.146 0.854 37 H 0.120 0.880 38 H 0.094 0.906 39 H 0.145 0.855 40 H 0.170 0.830 41 H 0.092 0.908 42 H 0.073 0.927 43 H 0.077 0.923 44 H 0.108 0.892 45 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 17.078 17.811 11.588 27.261 hybrid contribution -0.375 -0.405 0.307 0.632 sum 16.703 17.407 11.895 26.897 Atomic orbital electron populations 1.21972 0.95241 1.01770 1.01795 1.21012 0.96575 0.98806 0.92183 0.89698 1.22117 0.98167 0.88036 0.97921 1.61823 1.61052 1.02154 1.02139 1.20795 0.97224 0.90817 0.92261 1.19633 0.95527 0.95614 1.03453 1.20855 0.94379 0.95409 0.96731 1.21262 1.01988 0.94013 1.08642 1.19693 0.92707 0.85172 0.95442 1.83504 1.34912 1.29529 1.67501 1.20694 0.96577 0.96859 1.33269 0.90395 1.25303 0.95664 1.01739 0.96292 1.69738 1.17012 1.28967 1.40995 0.85191 0.79515 0.77232 0.78613 1.19101 1.19313 1.18516 1.20495 0.93165 1.00100 1.07335 1.20941 0.99538 0.90232 0.97046 1.22139 0.97885 0.98225 0.89087 1.21563 1.01510 0.92467 0.98604 1.21214 1.03065 0.96181 0.88782 0.85351 1.23738 0.76818 0.81025 0.85444 1.90656 1.36367 1.28627 1.87442 1.84511 1.70850 1.60200 1.17131 0.92354 0.93099 0.92933 0.92855 0.89743 0.92377 0.89574 0.85425 0.88009 0.90619 0.85495 0.82968 0.90753 0.92700 0.92310 0.89174 0.71366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.18 8.40 71.98 0.60 -2.58 16 2 C -0.07 -1.06 2.42 -10.74 -0.03 -1.08 16 3 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 4 C 0.06 0.93 4.90 86.32 0.42 1.35 16 5 N -0.55 -10.12 3.93 -900.94 -3.54 -13.66 16 6 C 0.12 2.24 5.12 85.56 0.44 2.68 16 7 C -0.14 -3.92 4.90 -19.84 -0.10 -4.01 16 8 C -0.06 -1.89 9.69 22.25 0.22 -1.68 16 9 C -0.24 -10.61 9.17 22.39 0.21 -10.41 16 10 C 0.12 5.53 6.65 22.58 0.15 5.68 16 11 O -0.25 -13.48 8.59 -22.72 -0.20 -13.68 16 12 C -0.40 -23.74 9.95 67.92 0.68 -23.07 16 13 H 0.08 4.91 5.44 -2.91 -0.02 4.89 16 14 C 0.01 0.47 5.49 84.83 0.47 0.93 16 15 N -0.93 -56.08 13.96 21.61 0.30 -55.78 16 16 Si 0.97 45.74 28.62 68.60 1.96 47.71 16 17 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 18 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 19 H -0.26 -12.16 7.11 99.48 0.71 -11.45 16 20 C -0.19 -7.05 9.99 22.39 0.22 -6.83 16 21 C -0.06 -1.66 7.87 22.25 0.18 -1.49 16 22 C 0.05 0.92 5.16 86.32 0.45 1.36 16 23 C -0.10 -1.67 4.95 30.65 0.15 -1.52 16 24 C -0.07 -1.04 2.48 -11.46 -0.03 -1.07 16 25 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 26 C 0.49 8.18 7.33 71.24 0.52 8.70 16 27 O -0.54 -12.40 14.29 21.95 0.31 -12.09 16 28 O -0.51 -6.24 13.35 -51.38 -0.69 -6.92 16 29 H 0.06 1.41 5.34 -2.39 -0.01 1.40 16 30 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.05 1.27 6.01 -2.38 -0.01 1.26 16 32 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.08 1.17 8.01 -2.39 -0.02 1.15 16 34 H 0.06 0.91 8.06 -2.39 -0.02 0.89 16 35 H 0.09 1.56 7.92 -2.39 -0.02 1.54 16 36 H 0.13 3.86 8.06 -2.91 -0.02 3.84 16 37 H 0.10 5.05 5.64 -2.91 -0.02 5.03 16 38 H 0.28 15.76 8.31 -92.71 -0.77 14.99 16 39 H 0.13 4.32 8.06 -2.91 -0.02 4.29 16 40 H 0.15 3.04 7.95 -2.91 -0.02 3.02 16 41 H 0.07 1.55 5.75 -2.38 -0.01 1.53 16 42 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.06 1.23 6.58 -2.38 -0.02 1.21 16 44 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.42 1.90 9.10 -74.06 -0.67 1.23 16 Total: -1.00 -72.15 357.60 3.05 -69.10 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: 0.34 Total: 18.34 kcal Atomic # 6 Polarization: -37.56 SS G_CDS: 4.54 Total: -33.02 kcal Atomic # 7 Polarization: -66.20 SS G_CDS: -3.24 Total: -69.44 kcal Atomic # 8 Polarization: -32.13 SS G_CDS: -0.57 Total: -32.69 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 1.96 Total: 47.71 kcal Total: -72.15 3.05 -69.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589398690.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.582 kcal (2) G-P(sol) polarization free energy of solvation -72.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds