Wall clock time and date at job start Sat Apr 11 2020 00:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.50379 * 2 1 4 4 C 1.53044 * 109.53340 * 120.09905 * 2 1 3 5 5 N 1.46836 * 109.52598 * 60.78059 * 4 2 1 6 6 C 1.46904 * 111.00169 * 185.84210 * 5 4 2 7 7 C 1.50699 * 109.46479 * 301.83356 * 6 5 4 8 8 C 1.38310 * 119.92800 * 90.00437 * 7 6 5 9 9 C 1.38102 * 120.06647 * 180.02562 * 8 7 6 10 10 C 1.38884 * 119.93296 * 359.97438 * 9 8 7 11 11 O 1.35746 * 120.07060 * 179.97438 * 10 9 8 12 12 C 1.34833 * 116.99806 * 5.53748 * 11 10 9 13 13 H 1.08004 * 120.00060 * 354.94519 * 12 11 10 14 14 C 1.38657 * 119.99788 * 174.93921 * 12 11 10 15 15 N 1.31564 * 119.99503 * 179.72513 * 14 12 11 16 16 Si 1.86792 * 120.00071 * 0.02562 * 14 12 11 17 17 H 1.48504 * 109.47306 * 269.72181 * 16 14 12 18 18 H 1.48501 * 109.47206 * 29.72553 * 16 14 12 19 19 H 1.48504 * 109.47326 * 149.72089 * 16 14 12 20 20 C 1.38879 * 119.86116 * 0.25315 * 10 9 8 21 21 C 1.38105 * 119.92811 * 359.49299 * 20 10 9 22 22 C 1.46852 * 111.20177 * 61.74229 * 5 4 2 23 23 C 1.53042 * 109.51869 * 298.25914 * 22 5 4 24 24 C 1.53114 * 109.50338 * 239.91718 * 2 1 3 25 25 H 1.09005 * 109.52245 * 177.76804 * 24 2 1 26 26 C 1.50700 * 109.52140 * 57.57972 * 24 2 1 27 27 O 1.20820 * 119.99894 * 0.31906 * 26 24 2 28 28 O 1.34234 * 119.99820 * 180.31319 * 26 24 2 29 29 H 1.09003 * 109.47218 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46984 * 300.07745 * 1 2 3 31 31 H 1.08995 * 109.47095 * 60.07870 * 1 2 3 32 32 H 1.09008 * 109.45994 * 300.76234 * 4 2 1 33 33 H 1.08998 * 109.46146 * 180.79937 * 4 2 1 34 34 H 1.08997 * 109.47032 * 181.83970 * 6 5 4 35 35 H 1.08997 * 109.47223 * 61.83334 * 6 5 4 36 36 H 1.07990 * 119.96608 * 359.97438 * 8 7 6 37 37 H 1.08001 * 120.03410 * 179.97438 * 9 8 7 38 38 H 0.96995 * 119.99332 * 180.28063 * 15 14 12 39 39 H 1.08001 * 120.03675 * 179.72435 * 20 10 9 40 40 H 1.08000 * 119.96370 * 180.23105 * 21 20 10 41 41 H 1.08995 * 109.46056 * 58.26783 * 22 5 4 42 42 H 1.08993 * 109.46608 * 178.25324 * 22 5 4 43 43 H 1.09002 * 109.49979 * 179.11737 * 23 22 5 44 44 H 1.08997 * 109.50148 * 299.23105 * 23 22 5 45 45 H 0.96703 * 116.99362 * 179.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0418 -0.7233 1.2479 5 7 1.5692 -2.1135 1.2377 6 6 1.9246 -2.7996 2.4872 7 6 3.4195 -2.7602 2.6739 8 6 4.0021 -1.7078 3.3565 9 6 5.3718 -1.6686 3.5289 10 6 6.1642 -2.6876 3.0165 11 8 7.5108 -2.6516 3.1838 12 6 8.0057 -1.6616 3.9540 13 1 7.3477 -0.8961 4.3382 14 6 9.3592 -1.6264 4.2528 15 7 9.8429 -0.6574 4.9998 16 14 10.4972 -2.9501 3.5878 17 1 10.5717 -4.0719 4.5580 18 1 9.9711 -3.4501 2.2923 19 1 11.8535 -2.3805 3.3845 20 6 5.5766 -3.7405 2.3275 21 6 4.2058 -3.7767 2.1630 22 6 2.0862 -2.8418 0.0720 23 6 1.5758 -2.1817 -1.2109 24 6 2.0412 -0.7234 -1.2489 25 1 3.1305 -0.6891 -1.2695 26 6 1.4916 -0.0513 -2.4806 27 8 0.7699 0.9116 -2.3722 28 8 1.8038 -0.5224 -3.6982 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5151 0.8893 31 1 -0.3633 0.5126 -0.8906 32 1 1.6677 -0.2190 2.1390 33 1 3.1316 -0.7103 1.2539 34 1 1.5916 -3.8363 2.4398 35 1 1.4403 -2.3003 3.3263 36 1 3.3855 -0.9155 3.7543 37 1 5.8262 -0.8463 4.0616 38 1 10.7904 -0.6306 5.2054 39 1 6.1905 -4.5322 1.9240 40 1 3.7479 -4.5972 1.6305 41 1 3.1759 -2.8187 0.0835 42 1 1.7444 -3.8760 0.1090 43 1 1.9724 -2.7130 -2.0761 44 1 0.4865 -2.2167 -1.2296 45 1 1.4270 -0.0584 -4.4583 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589398694.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:02:08 Heat of formation + Delta-G solvation = -92.130134 kcal Electronic energy + Delta-G solvation = -27212.260136 eV Core-core repulsion = 23388.200781 eV Total energy + Delta-G solvation = -3824.059356 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.01957 -39.67697 -38.70424 -36.89755 -36.29572 -34.16004 -32.43097 -31.87231 -30.34495 -29.75254 -27.40343 -26.54531 -25.23966 -23.48702 -23.02712 -21.95784 -21.58762 -20.43456 -18.77236 -18.24383 -17.94701 -17.29911 -16.92894 -16.20588 -15.61826 -15.18661 -15.14272 -14.77169 -14.35409 -14.05991 -13.98159 -13.85093 -13.70183 -13.55601 -13.30018 -12.84385 -12.66257 -12.53942 -12.27882 -12.11051 -11.73124 -11.61678 -11.53555 -11.39215 -11.24478 -11.13388 -11.00858 -10.82734 -10.71171 -10.61633 -10.45513 -10.21403 -10.10093 -9.45646 -8.92592 -8.33474 -8.24306 -7.39455 -6.47829 -4.14805 1.99926 2.03745 2.09385 2.83364 3.17380 3.21174 3.35254 3.98509 4.18062 4.37026 4.42460 4.55108 4.77999 4.80864 4.99973 5.03833 5.16244 5.22224 5.26825 5.32538 5.37016 5.48492 5.55018 5.62688 5.64289 5.71650 5.77428 5.79017 5.90801 5.96136 6.01663 6.05669 6.10683 6.20354 6.25371 6.30597 6.48611 6.54292 6.69931 6.93055 7.03477 7.10523 7.20361 7.26232 7.53554 7.70062 7.72891 7.97036 8.87150 9.48764 10.59673 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.017346 B = 0.003039 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.823489 B = 9210.410397 C = 9651.989522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.071 4.071 3 H 0.078 0.922 4 C 0.057 3.943 5 N -0.527 5.527 6 C 0.108 3.892 7 C -0.215 4.215 8 C -0.061 4.061 9 C -0.222 4.222 10 C 0.162 3.838 11 O -0.216 6.216 12 C -0.391 4.391 13 H 0.106 0.894 14 C 0.064 3.936 15 N -0.878 5.878 16 Si 0.906 3.094 17 H -0.273 1.273 18 H -0.260 1.260 19 H -0.282 1.282 20 C -0.194 4.194 21 C -0.065 4.065 22 C 0.052 3.948 23 C -0.106 4.106 24 C -0.078 4.078 25 H 0.107 0.893 26 C 0.484 3.516 27 O -0.510 6.510 28 O -0.517 6.517 29 H 0.064 0.936 30 H 0.050 0.950 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.049 0.951 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.108 0.892 37 H 0.132 0.868 38 H 0.280 0.720 39 H 0.115 0.885 40 H 0.111 0.889 41 H 0.048 0.952 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.248 -2.747 -12.290 21.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.090 4.090 3 H 0.096 0.904 4 C -0.071 4.071 5 N -0.249 5.249 6 C -0.019 4.019 7 C -0.218 4.218 8 C -0.080 4.080 9 C -0.241 4.241 10 C 0.109 3.891 11 O -0.121 6.121 12 C -0.466 4.466 13 H 0.124 0.876 14 C -0.140 4.140 15 N -0.515 5.515 16 Si 0.731 3.269 17 H -0.198 1.198 18 H -0.184 1.184 19 H -0.207 1.207 20 C -0.214 4.214 21 C -0.084 4.084 22 C -0.076 4.076 23 C -0.144 4.144 24 C -0.097 4.097 25 H 0.125 0.875 26 C 0.327 3.673 27 O -0.398 6.398 28 O -0.328 6.328 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.067 0.933 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.126 0.874 37 H 0.150 0.850 38 H 0.090 0.910 39 H 0.133 0.867 40 H 0.129 0.871 41 H 0.067 0.933 42 H 0.095 0.905 43 H 0.096 0.904 44 H 0.095 0.905 45 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -17.415 -2.715 -11.934 21.285 hybrid contribution 1.416 0.041 -0.502 1.503 sum -15.999 -2.674 -12.436 20.440 Atomic orbital electron populations 1.22048 0.93887 1.02615 1.02479 1.21061 0.97686 0.98524 0.91711 0.90386 1.22141 0.98710 0.88902 0.97302 1.62408 1.58290 1.01999 1.02247 1.20956 0.90371 0.99071 0.91494 1.20021 0.96311 0.98207 1.07218 1.20681 0.94085 0.96680 0.96505 1.21283 0.93789 1.01594 1.07449 1.19144 0.83646 0.93096 0.93197 1.83574 1.16670 1.49743 1.62116 1.20768 0.94286 1.03770 1.27812 0.87629 1.24478 0.96425 0.97540 0.95518 1.69647 1.15123 1.31361 1.35390 0.86179 0.79097 0.81066 0.80550 1.19841 1.18383 1.20713 1.20209 0.94541 0.99453 1.07159 1.20505 0.92497 0.97171 0.98256 1.22096 0.98642 0.97520 0.89361 1.21620 1.02163 0.92188 0.98436 1.21202 1.02256 0.96897 0.89378 0.87505 1.23612 0.77422 0.81614 0.84642 1.90643 1.35133 1.27057 1.86936 1.84572 1.71073 1.60211 1.16991 0.91701 0.93069 0.91021 0.90364 0.93287 0.90689 0.90590 0.87434 0.85040 0.90976 0.86661 0.87140 0.93334 0.90456 0.90449 0.90483 0.73478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 8.40 37.16 0.31 -1.35 16 2 C -0.07 -0.77 2.42 -90.54 -0.22 -0.99 16 3 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 4 C 0.06 0.67 3.97 -3.84 -0.02 0.65 16 5 N -0.53 -5.83 4.14 -236.11 -0.98 -6.81 16 6 C 0.11 1.27 5.55 -4.97 -0.03 1.24 16 7 C -0.22 -3.18 4.04 -104.57 -0.42 -3.60 16 8 C -0.06 -1.01 8.00 -39.60 -0.32 -1.33 16 9 C -0.22 -4.57 9.17 -39.39 -0.36 -4.93 16 10 C 0.16 3.59 6.65 -39.10 -0.26 3.33 16 11 O -0.22 -5.58 8.59 0.05 0.00 -5.58 16 12 C -0.39 -10.82 9.95 30.89 0.31 -10.52 16 13 H 0.11 2.99 5.44 -52.48 -0.29 2.70 16 14 C 0.06 1.77 5.49 -17.51 -0.10 1.67 16 15 N -0.88 -25.04 13.96 55.48 0.77 -24.27 16 16 Si 0.91 21.36 28.62 -169.99 -4.86 16.49 16 17 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 18 H -0.26 -6.14 7.11 56.52 0.40 -5.74 16 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 20 C -0.19 -3.65 9.99 -39.39 -0.39 -4.04 16 21 C -0.07 -1.01 8.10 -39.61 -0.32 -1.33 16 22 C 0.05 0.54 4.82 -3.83 -0.02 0.52 16 23 C -0.11 -0.98 4.95 -26.65 -0.13 -1.11 16 24 C -0.08 -0.80 2.48 -91.65 -0.23 -1.02 16 25 H 0.11 1.11 8.14 -51.93 -0.42 0.68 16 26 C 0.48 5.03 7.33 36.01 0.26 5.29 16 27 O -0.51 -6.50 14.28 -18.74 -0.27 -6.77 16 28 O -0.52 -4.17 13.35 -39.27 -0.52 -4.69 16 29 H 0.06 0.70 6.01 -51.93 -0.31 0.39 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.86 5.33 -51.93 -0.28 0.58 16 32 H 0.08 0.89 8.12 -51.92 -0.42 0.47 16 33 H 0.05 0.67 6.46 -51.93 -0.34 0.33 16 34 H 0.07 0.81 8.00 -51.93 -0.42 0.39 16 35 H 0.08 0.86 8.08 -51.93 -0.42 0.44 16 36 H 0.11 1.58 8.02 -52.49 -0.42 1.16 16 37 H 0.13 2.90 5.64 -52.49 -0.30 2.60 16 38 H 0.28 7.38 8.31 -40.82 -0.34 7.04 16 39 H 0.12 2.04 8.06 -52.49 -0.42 1.62 16 40 H 0.11 1.41 8.03 -52.49 -0.42 0.99 16 41 H 0.05 0.58 6.55 -51.93 -0.34 0.24 16 42 H 0.08 0.72 8.06 -51.93 -0.42 0.30 16 43 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.08 0.71 6.58 -51.93 -0.34 0.37 16 45 H 0.41 1.58 9.10 45.56 0.41 1.99 16 LS Contribution 353.98 15.07 5.33 5.33 Total: -1.00 -30.37 353.98 -7.99 -38.36 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -5.54 Total: 5.44 kcal Atomic # 6 Polarization: -15.59 SS G_CDS: -1.93 Total: -17.51 kcal Atomic # 7 Polarization: -30.87 SS G_CDS: -0.20 Total: -31.07 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: -0.79 Total: -17.04 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.86 Total: 16.49 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.37 -7.99 -38.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589398694.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.765 kcal (2) G-P(sol) polarization free energy of solvation -30.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds