Wall clock time and date at job start Sat Apr 11 2020 00:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.50379 * 2 1 4 4 C 1.53044 * 109.53340 * 120.09905 * 2 1 3 5 5 N 1.46836 * 109.52598 * 60.78059 * 4 2 1 6 6 C 1.46904 * 111.00169 * 185.84210 * 5 4 2 7 7 C 1.50699 * 109.46479 * 301.83356 * 6 5 4 8 8 C 1.38310 * 119.92800 * 90.00437 * 7 6 5 9 9 C 1.38102 * 120.06647 * 180.02562 * 8 7 6 10 10 C 1.38884 * 119.93296 * 359.97438 * 9 8 7 11 11 O 1.35746 * 120.07060 * 179.97438 * 10 9 8 12 12 C 1.34833 * 116.99806 * 5.53748 * 11 10 9 13 13 H 1.08004 * 120.00060 * 354.94519 * 12 11 10 14 14 C 1.38657 * 119.99788 * 174.93921 * 12 11 10 15 15 N 1.31564 * 119.99503 * 179.72513 * 14 12 11 16 16 Si 1.86792 * 120.00071 * 0.02562 * 14 12 11 17 17 H 1.48504 * 109.47306 * 269.72181 * 16 14 12 18 18 H 1.48501 * 109.47206 * 29.72553 * 16 14 12 19 19 H 1.48504 * 109.47326 * 149.72089 * 16 14 12 20 20 C 1.38879 * 119.86116 * 0.25315 * 10 9 8 21 21 C 1.38105 * 119.92811 * 359.49299 * 20 10 9 22 22 C 1.46852 * 111.20177 * 61.74229 * 5 4 2 23 23 C 1.53042 * 109.51869 * 298.25914 * 22 5 4 24 24 C 1.53114 * 109.50338 * 239.91718 * 2 1 3 25 25 H 1.09005 * 109.52245 * 177.76804 * 24 2 1 26 26 C 1.50700 * 109.52140 * 57.57972 * 24 2 1 27 27 O 1.20820 * 119.99894 * 0.31906 * 26 24 2 28 28 O 1.34234 * 119.99820 * 180.31319 * 26 24 2 29 29 H 1.09003 * 109.47218 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46984 * 300.07745 * 1 2 3 31 31 H 1.08995 * 109.47095 * 60.07870 * 1 2 3 32 32 H 1.09008 * 109.45994 * 300.76234 * 4 2 1 33 33 H 1.08998 * 109.46146 * 180.79937 * 4 2 1 34 34 H 1.08997 * 109.47032 * 181.83970 * 6 5 4 35 35 H 1.08997 * 109.47223 * 61.83334 * 6 5 4 36 36 H 1.07990 * 119.96608 * 359.97438 * 8 7 6 37 37 H 1.08001 * 120.03410 * 179.97438 * 9 8 7 38 38 H 0.96995 * 119.99332 * 180.28063 * 15 14 12 39 39 H 1.08001 * 120.03675 * 179.72435 * 20 10 9 40 40 H 1.08000 * 119.96370 * 180.23105 * 21 20 10 41 41 H 1.08995 * 109.46056 * 58.26783 * 22 5 4 42 42 H 1.08993 * 109.46608 * 178.25324 * 22 5 4 43 43 H 1.09002 * 109.49979 * 179.11737 * 23 22 5 44 44 H 1.08997 * 109.50148 * 299.23105 * 23 22 5 45 45 H 0.96703 * 116.99362 * 179.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0418 -0.7233 1.2479 5 7 1.5692 -2.1135 1.2377 6 6 1.9246 -2.7996 2.4872 7 6 3.4195 -2.7602 2.6739 8 6 4.0021 -1.7078 3.3565 9 6 5.3718 -1.6686 3.5289 10 6 6.1642 -2.6876 3.0165 11 8 7.5108 -2.6516 3.1838 12 6 8.0057 -1.6616 3.9540 13 1 7.3477 -0.8961 4.3382 14 6 9.3592 -1.6264 4.2528 15 7 9.8429 -0.6574 4.9998 16 14 10.4972 -2.9501 3.5878 17 1 10.5717 -4.0719 4.5580 18 1 9.9711 -3.4501 2.2923 19 1 11.8535 -2.3805 3.3845 20 6 5.5766 -3.7405 2.3275 21 6 4.2058 -3.7767 2.1630 22 6 2.0862 -2.8418 0.0720 23 6 1.5758 -2.1817 -1.2109 24 6 2.0412 -0.7234 -1.2489 25 1 3.1305 -0.6891 -1.2695 26 6 1.4916 -0.0513 -2.4806 27 8 0.7699 0.9116 -2.3722 28 8 1.8038 -0.5224 -3.6982 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5151 0.8893 31 1 -0.3633 0.5126 -0.8906 32 1 1.6677 -0.2190 2.1390 33 1 3.1316 -0.7103 1.2539 34 1 1.5916 -3.8363 2.4398 35 1 1.4403 -2.3003 3.3263 36 1 3.3855 -0.9155 3.7543 37 1 5.8262 -0.8463 4.0616 38 1 10.7904 -0.6306 5.2054 39 1 6.1905 -4.5322 1.9240 40 1 3.7479 -4.5972 1.6305 41 1 3.1759 -2.8187 0.0835 42 1 1.7444 -3.8760 0.1090 43 1 1.9724 -2.7130 -2.0761 44 1 0.4865 -2.2167 -1.2296 45 1 1.4270 -0.0584 -4.4583 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589398694.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:02:07 Heat of formation + Delta-G solvation = -111.704793 kcal Electronic energy + Delta-G solvation = -27213.108957 eV Core-core repulsion = 23388.200781 eV Total energy + Delta-G solvation = -3824.908176 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.87136 -41.02947 -39.93201 -38.25750 -37.13705 -35.24765 -34.40765 -32.74631 -31.78477 -31.07269 -28.35765 -27.80229 -26.88008 -24.53999 -24.09135 -23.23009 -22.58592 -21.74401 -19.82824 -19.67431 -19.08026 -18.95832 -17.77572 -17.10597 -16.69823 -16.48022 -16.36413 -16.02460 -15.73188 -15.57804 -15.39290 -15.03204 -14.80651 -14.56942 -14.37359 -14.18894 -14.17214 -14.03248 -13.50178 -13.11945 -12.98932 -12.64265 -12.58565 -12.52243 -12.45037 -12.40121 -12.24116 -12.06616 -11.95171 -11.87427 -11.53070 -11.29350 -11.27441 -10.96997 -10.90402 -9.78684 -9.25246 -8.96096 -8.52080 -6.24817 0.56148 0.61823 1.19695 1.29849 1.33814 1.50134 2.13365 2.26058 2.72366 2.98765 3.12559 3.22608 3.54611 3.73968 3.97150 4.01954 4.11603 4.16575 4.19736 4.35761 4.39913 4.48684 4.55055 4.57936 4.69114 4.72426 4.76250 4.86052 4.90617 4.95952 4.97253 5.04724 5.09266 5.19142 5.24899 5.30931 5.32905 5.37160 5.51332 5.56311 5.73036 5.76406 5.79075 5.90324 6.15950 6.23241 6.24623 6.82357 7.02211 7.57138 8.59661 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.017346 B = 0.003039 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.823489 B = 9210.410397 C = 9651.989522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.069 4.069 3 H 0.066 0.934 4 C 0.061 3.939 5 N -0.518 5.518 6 C 0.110 3.890 7 C -0.184 4.184 8 C -0.061 4.061 9 C -0.240 4.240 10 C 0.120 3.880 11 O -0.246 6.246 12 C -0.399 4.399 13 H 0.079 0.921 14 C 0.009 3.991 15 N -0.924 5.924 16 Si 0.972 3.028 17 H -0.265 1.265 18 H -0.263 1.263 19 H -0.268 1.268 20 C -0.194 4.194 21 C -0.054 4.054 22 C 0.049 3.951 23 C -0.099 4.099 24 C -0.081 4.081 25 H 0.103 0.897 26 C 0.490 3.510 27 O -0.538 6.538 28 O -0.512 6.512 29 H 0.069 0.931 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.080 0.920 33 H 0.026 0.974 34 H 0.102 0.898 35 H 0.086 0.914 36 H 0.128 0.872 37 H 0.102 0.898 38 H 0.285 0.715 39 H 0.126 0.874 40 H 0.154 0.846 41 H 0.033 0.967 42 H 0.100 0.900 43 H 0.091 0.909 44 H 0.081 0.919 45 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.887 -5.281 -14.146 24.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.088 4.088 3 H 0.085 0.915 4 C -0.067 4.067 5 N -0.241 5.241 6 C -0.018 4.018 7 C -0.186 4.186 8 C -0.079 4.079 9 C -0.259 4.259 10 C 0.071 3.929 11 O -0.154 6.154 12 C -0.475 4.475 13 H 0.096 0.904 14 C -0.189 4.189 15 N -0.565 5.565 16 Si 0.794 3.206 17 H -0.190 1.190 18 H -0.187 1.187 19 H -0.192 1.192 20 C -0.213 4.213 21 C -0.073 4.073 22 C -0.079 4.079 23 C -0.136 4.136 24 C -0.100 4.100 25 H 0.121 0.879 26 C 0.334 3.666 27 O -0.428 6.428 28 O -0.325 6.325 29 H 0.088 0.912 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.099 0.901 33 H 0.044 0.956 34 H 0.120 0.880 35 H 0.104 0.896 36 H 0.146 0.854 37 H 0.120 0.880 38 H 0.094 0.906 39 H 0.144 0.856 40 H 0.172 0.828 41 H 0.051 0.949 42 H 0.118 0.882 43 H 0.109 0.891 44 H 0.100 0.900 45 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -20.106 -5.261 -13.828 24.963 hybrid contribution 1.840 0.826 -0.065 2.018 sum -18.266 -4.435 -13.893 23.374 Atomic orbital electron populations 1.21941 0.93455 1.02685 1.01972 1.20996 0.97872 0.98016 0.91953 0.91539 1.22082 0.97192 0.89612 0.97824 1.62445 1.57744 1.01554 1.02330 1.21126 0.87372 1.01009 0.92266 1.20549 0.98520 0.96117 1.03397 1.20927 0.92467 0.98046 0.96487 1.21262 0.95619 1.00883 1.08128 1.19708 0.82844 0.95078 0.95296 1.83514 1.18666 1.49629 1.63581 1.20685 0.94479 1.04033 1.28350 0.90368 1.25297 0.97803 0.99812 0.95984 1.69736 1.15740 1.33425 1.37579 0.85205 0.77378 0.78412 0.79638 1.19014 1.18680 1.19233 1.20540 0.96210 0.98476 1.06072 1.20983 0.90996 0.98158 0.97141 1.22211 0.97691 0.98699 0.89260 1.21585 1.02376 0.91151 0.98510 1.21204 1.01975 0.97733 0.89130 0.87935 1.23555 0.76742 0.81025 0.85290 1.90644 1.36492 1.28246 1.87420 1.84520 1.70834 1.60158 1.17033 0.91199 0.93007 0.92110 0.90115 0.95588 0.88014 0.89554 0.85381 0.88009 0.90573 0.85618 0.82800 0.94919 0.88208 0.89081 0.90022 0.71252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 8.40 71.98 0.60 -2.22 16 2 C -0.07 -1.41 2.42 -10.74 -0.03 -1.44 16 3 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 4 C 0.06 1.29 3.97 86.33 0.34 1.63 16 5 N -0.52 -9.42 4.14 -900.93 -3.73 -13.15 16 6 C 0.11 2.04 5.55 85.56 0.48 2.52 16 7 C -0.18 -4.82 4.04 -19.83 -0.08 -4.90 16 8 C -0.06 -1.97 8.00 22.25 0.18 -1.79 16 9 C -0.24 -10.29 9.17 22.39 0.21 -10.09 16 10 C 0.12 5.47 6.65 22.58 0.15 5.62 16 11 O -0.25 -13.31 8.59 -22.73 -0.20 -13.50 16 12 C -0.40 -23.56 9.95 67.92 0.68 -22.88 16 13 H 0.08 4.86 5.44 -2.91 -0.02 4.85 16 14 C 0.01 0.54 5.49 84.83 0.47 1.01 16 15 N -0.92 -55.38 13.96 21.62 0.30 -55.08 16 16 Si 0.97 45.34 28.62 68.60 1.96 47.30 16 17 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 18 H -0.26 -12.19 7.11 99.48 0.71 -11.48 16 19 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 20 C -0.19 -7.00 9.99 22.39 0.22 -6.77 16 21 C -0.05 -1.48 8.10 22.25 0.18 -1.29 16 22 C 0.05 0.80 4.82 86.33 0.42 1.22 16 23 C -0.10 -1.47 4.95 30.65 0.15 -1.32 16 24 C -0.08 -1.50 2.48 -11.46 -0.03 -1.52 16 25 H 0.10 1.99 8.14 -2.38 -0.02 1.97 16 26 C 0.49 9.32 7.33 71.24 0.52 9.84 16 27 O -0.54 -13.12 14.28 21.98 0.31 -12.80 16 28 O -0.51 -7.02 13.35 -51.46 -0.69 -7.70 16 29 H 0.07 1.30 6.01 -2.39 -0.01 1.28 16 30 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 31 H 0.06 1.37 5.33 -2.39 -0.01 1.36 16 32 H 0.08 1.66 8.12 -2.38 -0.02 1.64 16 33 H 0.03 0.67 6.46 -2.39 -0.02 0.66 16 34 H 0.10 1.51 8.00 -2.39 -0.02 1.49 16 35 H 0.09 1.54 8.08 -2.39 -0.02 1.52 16 36 H 0.13 3.59 8.02 -2.92 -0.02 3.57 16 37 H 0.10 4.93 5.64 -2.91 -0.02 4.91 16 38 H 0.28 15.63 8.31 -92.71 -0.77 14.86 16 39 H 0.13 4.23 8.06 -2.91 -0.02 4.21 16 40 H 0.15 2.95 8.03 -2.91 -0.02 2.93 16 41 H 0.03 0.66 6.55 -2.39 -0.02 0.64 16 42 H 0.10 1.25 8.06 -2.39 -0.02 1.23 16 43 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.08 1.19 6.58 -2.39 -0.02 1.17 16 45 H 0.43 2.27 9.10 -74.06 -0.67 1.59 16 Total: -1.00 -70.25 353.98 2.77 -67.48 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: 0.35 Total: 19.85 kcal Atomic # 6 Polarization: -36.84 SS G_CDS: 4.46 Total: -32.39 kcal Atomic # 7 Polarization: -64.80 SS G_CDS: -3.43 Total: -68.24 kcal Atomic # 8 Polarization: -33.44 SS G_CDS: -0.57 Total: -34.01 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 1.96 Total: 47.30 kcal Total: -70.25 2.77 -67.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589398694.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.226 kcal (2) G-P(sol) polarization free energy of solvation -70.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds