Wall clock time and date at job start Sat Apr 11 2020 00:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.47035 * 2 1 4 4 C 1.50692 * 109.46794 * 119.99985 * 2 1 3 5 5 O 1.20833 * 120.00133 * 120.00236 * 4 2 1 6 6 O 1.34229 * 120.00479 * 299.99564 * 4 2 1 7 7 C 1.50704 * 109.46892 * 240.00164 * 2 1 3 8 8 C 1.38280 * 119.92944 * 120.00143 * 7 2 1 9 9 C 1.38110 * 120.07031 * 180.02562 * 8 7 2 10 10 C 1.38879 * 119.92578 * 359.97438 * 9 8 7 11 11 N 1.39925 * 120.06766 * 179.97438 * 10 9 8 12 12 C 1.34782 * 119.99729 * 35.07242 * 11 10 9 13 13 O 1.21284 * 120.00143 * 355.09583 * 12 11 10 14 14 C 1.50702 * 119.99969 * 175.09954 * 12 11 10 15 15 C 1.52992 * 109.47449 * 179.97438 * 14 12 11 16 16 C 1.53000 * 109.47542 * 179.97438 * 15 14 12 17 17 C 1.52994 * 109.47177 * 180.02562 * 16 15 14 18 18 C 1.50702 * 109.47083 * 180.02562 * 17 16 15 19 19 H 1.08004 * 119.99939 * 0.02562 * 18 17 16 20 20 C 1.37872 * 120.00335 * 180.02562 * 18 17 16 21 21 N 1.31519 * 120.00001 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00364 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46925 * 89.99899 * 22 20 18 24 24 H 1.48500 * 109.47444 * 209.99637 * 22 20 18 25 25 H 1.48499 * 109.46980 * 330.00059 * 22 20 18 26 26 C 1.38870 * 119.86024 * 0.27366 * 10 9 8 27 27 C 1.38108 * 119.92882 * 359.47543 * 26 10 9 28 28 H 1.09002 * 109.47002 * 60.00266 * 1 2 3 29 29 H 1.09002 * 109.47035 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47390 * 300.00171 * 1 2 3 31 31 H 0.96699 * 117.00070 * 180.02562 * 6 4 2 32 32 H 1.08002 * 119.96352 * 0.02562 * 8 7 2 33 33 H 1.08000 * 120.03471 * 179.97438 * 9 8 7 34 34 H 0.97001 * 120.00418 * 214.79990 * 11 10 9 35 35 H 1.09004 * 109.46916 * 300.00085 * 14 12 11 36 36 H 1.09007 * 109.47097 * 59.99341 * 14 12 11 37 37 H 1.09004 * 109.47338 * 300.00079 * 15 14 12 38 38 H 1.09004 * 109.46798 * 59.99628 * 15 14 12 39 39 H 1.08996 * 109.47269 * 300.00801 * 16 15 14 40 40 H 1.08998 * 109.46725 * 60.00380 * 16 15 14 41 41 H 1.09000 * 109.47462 * 299.99804 * 17 16 15 42 42 H 1.08998 * 109.47014 * 60.00519 * 17 16 15 43 43 H 0.96996 * 120.00055 * 180.02562 * 21 20 18 44 44 H 1.08003 * 120.03283 * 179.70452 * 26 10 9 45 45 H 1.07998 * 119.96440 * 180.25361 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.7270 -1.6928 1.1196 6 8 1.7081 -0.2518 2.4496 7 6 2.0323 -0.7104 -1.2305 8 6 2.8273 -0.0370 -2.1398 9 6 3.2887 -0.6850 -3.2687 10 6 2.9540 -2.0146 -3.4899 11 7 3.4195 -2.6739 -4.6330 12 6 4.6416 -2.3888 -5.1246 13 8 5.3016 -1.4992 -4.6307 14 6 5.1880 -3.1754 -6.2881 15 6 6.5810 -2.6543 -6.6469 16 6 7.1360 -3.4533 -7.8278 17 6 8.5293 -2.9326 -8.1861 18 6 9.0757 -3.7192 -9.3496 19 1 8.4878 -4.5111 -9.7898 20 6 10.3261 -3.4280 -9.8522 21 7 11.0418 -2.4634 -9.3166 22 14 11.0037 -4.4035 -11.2940 23 1 10.6119 -3.7441 -12.5656 24 1 12.4847 -4.4596 -11.2015 25 1 10.4530 -5.7822 -11.2612 26 6 2.1513 -2.6865 -2.5774 27 6 1.6973 -2.0343 -1.4479 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 2.0541 -0.7406 3.2088 32 1 3.0875 0.9969 -1.9669 33 1 3.9092 -0.1584 -3.9787 34 1 2.8642 -3.3389 -5.0693 35 1 5.2528 -4.2290 -6.0161 36 1 4.5258 -3.0620 -7.1465 37 1 6.5159 -1.6008 -6.9191 38 1 7.2434 -2.7675 -5.7886 39 1 7.2012 -4.5067 -7.5552 40 1 6.4738 -3.3405 -8.6861 41 1 8.4645 -1.8792 -8.4586 42 1 9.1913 -3.0458 -7.3276 43 1 11.9214 -2.2583 -9.6704 44 1 1.8853 -3.7191 -2.7491 45 1 1.0764 -2.5575 -0.7358 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589504823.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:02:12 Heat of formation + Delta-G solvation = -129.105685 kcal Electronic energy + Delta-G solvation = -25082.259898 eV Core-core repulsion = 21256.597162 eV Total energy + Delta-G solvation = -3825.662736 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.07701 -40.44039 -38.79288 -36.53148 -35.63285 -34.86810 -33.64022 -32.61634 -31.16836 -30.09671 -28.62680 -25.91527 -25.33379 -23.57078 -22.95342 -22.13115 -20.75497 -20.19998 -20.00032 -18.39409 -17.92005 -17.20272 -16.79849 -16.31754 -16.13104 -15.84930 -15.69348 -14.85968 -14.61628 -14.40799 -14.09572 -13.94820 -13.87423 -13.59401 -13.34930 -12.93828 -12.68621 -12.59472 -12.25941 -12.19496 -11.88485 -11.76972 -11.66936 -11.61352 -11.35405 -10.99087 -10.78367 -10.56028 -10.51581 -10.43229 -10.40419 -9.82301 -9.62013 -9.24195 -9.07937 -8.98920 -8.30295 -8.25892 -5.95012 -3.97645 0.96970 1.24853 1.82754 2.50157 2.69719 2.95125 3.34215 3.40295 3.43464 3.62458 4.09491 4.38521 4.48980 4.59273 4.66188 4.79965 4.81939 4.94863 5.14931 5.18842 5.22995 5.26428 5.30530 5.40162 5.40333 5.48874 5.61512 5.76723 5.84784 6.02463 6.09256 6.10503 6.16973 6.27194 6.31594 6.34278 6.52198 6.81652 6.84792 6.99567 7.18375 7.26157 7.50321 7.74033 7.89716 8.05894 8.07935 8.47804 9.10021 9.66037 11.16277 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.034869 B = 0.001701 C = 0.001673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.817497 B =16454.549343 C =16735.089000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.036 4.036 3 H 0.116 0.884 4 C 0.478 3.522 5 O -0.501 6.501 6 O -0.518 6.518 7 C -0.106 4.106 8 C -0.086 4.086 9 C -0.123 4.123 10 C 0.157 3.843 11 N -0.682 5.682 12 C 0.512 3.488 13 O -0.513 6.513 14 C -0.137 4.137 15 C -0.104 4.104 16 C -0.110 4.110 17 C 0.019 3.981 18 C -0.521 4.521 19 H 0.054 0.946 20 C 0.055 3.945 21 N -0.895 5.895 22 Si 0.892 3.108 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.274 1.274 26 C -0.149 4.149 27 C -0.067 4.067 28 H 0.075 0.925 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.410 0.590 32 H 0.126 0.874 33 H 0.143 0.857 34 H 0.411 0.589 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.047 0.953 40 H 0.047 0.953 41 H 0.016 0.984 42 H 0.016 0.984 43 H 0.260 0.740 44 H 0.126 0.874 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.093 3.854 20.807 34.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.055 4.055 3 H 0.134 0.866 4 C 0.319 3.681 5 O -0.387 6.387 6 O -0.330 6.330 7 C -0.107 4.107 8 C -0.105 4.105 9 C -0.144 4.144 10 C 0.063 3.937 11 N -0.328 5.328 12 C 0.301 3.699 13 O -0.387 6.387 14 C -0.177 4.177 15 C -0.142 4.142 16 C -0.148 4.148 17 C -0.018 4.018 18 C -0.559 4.559 19 H 0.073 0.927 20 C -0.146 4.146 21 N -0.534 5.534 22 Si 0.720 3.280 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.199 1.199 26 C -0.170 4.170 27 C -0.086 4.086 28 H 0.094 0.906 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.269 0.731 32 H 0.144 0.856 33 H 0.161 0.839 34 H 0.247 0.753 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.034 0.966 42 H 0.034 0.966 43 H 0.070 0.930 44 H 0.144 0.856 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -26.332 4.488 20.713 33.801 hybrid contribution 0.507 -1.264 -0.433 1.429 sum -25.824 3.224 20.281 32.994 Atomic orbital electron populations 1.21812 0.91102 1.03239 1.03679 1.19855 0.98262 1.00185 0.87183 0.86584 1.23459 0.77226 0.82734 0.84643 1.90781 1.34997 1.25877 1.87083 1.84516 1.72389 1.59218 1.16876 1.19187 1.01104 0.94848 0.95534 1.20892 0.95984 0.99849 0.93780 1.21299 1.00934 0.92921 0.99203 1.17860 0.96367 0.91531 0.87947 1.43755 1.18310 1.42848 1.27846 1.21357 0.79786 0.84015 0.84765 1.90707 1.58034 1.30551 1.59418 1.21826 1.00194 1.00387 0.95288 1.21476 0.92287 1.00576 0.99885 1.21649 0.99716 0.98326 0.95101 1.19098 0.89929 0.96427 0.96319 1.21282 1.01279 1.17773 1.15578 0.92745 1.25045 0.97094 0.95336 0.97117 1.69975 1.11712 1.30265 1.41477 0.86605 0.78101 0.80447 0.82888 1.20711 1.21255 1.19933 1.20843 1.02022 0.99780 0.94341 1.20599 0.98619 0.93512 0.95861 0.90559 0.91877 0.90920 0.73120 0.85598 0.83928 0.75340 0.88727 0.88738 0.91676 0.91687 0.93417 0.93411 0.96571 0.96558 0.93043 0.85623 0.86198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.65 8.94 37.16 0.33 -0.32 16 2 C -0.04 -0.24 3.00 -92.92 -0.28 -0.52 16 3 H 0.12 0.59 7.87 -51.93 -0.41 0.18 16 4 C 0.48 3.96 7.49 36.00 0.27 4.23 16 5 O -0.50 -6.04 15.86 -18.76 -0.30 -6.34 16 6 O -0.52 -2.90 13.33 -39.26 -0.52 -3.43 16 7 C -0.11 -0.98 4.40 -104.59 -0.46 -1.44 16 8 C -0.09 -0.88 9.66 -39.61 -0.38 -1.26 16 9 C -0.12 -1.53 8.70 -39.39 -0.34 -1.87 16 10 C 0.16 1.82 6.30 -83.69 -0.53 1.29 16 11 N -0.68 -7.15 5.34 -9.86 -0.05 -7.20 16 12 C 0.51 6.99 7.68 -10.98 -0.08 6.90 16 13 O -0.51 -9.05 13.41 5.55 0.07 -8.97 16 14 C -0.14 -1.74 5.70 -27.89 -0.16 -1.90 16 15 C -0.10 -1.83 4.50 -26.74 -0.12 -1.95 16 16 C -0.11 -2.25 5.15 -26.73 -0.14 -2.39 16 17 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 18 C -0.52 -15.04 9.11 -34.44 -0.31 -15.35 16 19 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16 20 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 21 N -0.89 -27.58 13.29 55.43 0.74 -26.85 16 22 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 26 C -0.15 -1.47 9.97 -39.40 -0.39 -1.86 16 27 C -0.07 -0.64 7.92 -39.61 -0.31 -0.95 16 28 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.30 7.38 -51.93 -0.38 -0.09 16 30 H 0.07 0.27 8.11 -51.93 -0.42 -0.15 16 31 H 0.41 0.80 9.10 45.56 0.41 1.21 16 32 H 0.13 1.01 7.94 -52.49 -0.42 0.59 16 33 H 0.14 1.99 6.21 -52.49 -0.33 1.66 16 34 H 0.41 2.81 8.82 -40.82 -0.36 2.45 16 35 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 38 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 39 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 44 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 45 H 0.12 0.99 7.51 -52.49 -0.39 0.59 16 LS Contribution 381.30 15.07 5.75 5.75 Total: -1.00 -37.20 381.30 -8.55 -45.75 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -6.06 Total: -0.13 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: -3.15 Total: -15.51 kcal Atomic # 7 Polarization: -34.73 SS G_CDS: 0.68 Total: -34.05 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: -0.75 Total: -18.74 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -37.20 -8.55 -45.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589504823.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.358 kcal (2) G-P(sol) polarization free energy of solvation -37.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds