Wall clock time and date at job start Sat Apr 11 2020 00:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.47035 * 2 1 4 4 C 1.50692 * 109.46794 * 119.99985 * 2 1 3 5 5 O 1.20833 * 120.00133 * 120.00236 * 4 2 1 6 6 O 1.34229 * 120.00479 * 299.99564 * 4 2 1 7 7 C 1.50704 * 109.46892 * 240.00164 * 2 1 3 8 8 C 1.38280 * 119.92944 * 120.00143 * 7 2 1 9 9 C 1.38110 * 120.07031 * 180.02562 * 8 7 2 10 10 C 1.38879 * 119.92578 * 359.97438 * 9 8 7 11 11 N 1.39925 * 120.06766 * 179.97438 * 10 9 8 12 12 C 1.34782 * 119.99729 * 35.07242 * 11 10 9 13 13 O 1.21284 * 120.00143 * 355.09583 * 12 11 10 14 14 C 1.50702 * 119.99969 * 175.09954 * 12 11 10 15 15 C 1.52992 * 109.47449 * 179.97438 * 14 12 11 16 16 C 1.53000 * 109.47542 * 179.97438 * 15 14 12 17 17 C 1.52994 * 109.47177 * 180.02562 * 16 15 14 18 18 C 1.50702 * 109.47083 * 180.02562 * 17 16 15 19 19 H 1.08004 * 119.99939 * 0.02562 * 18 17 16 20 20 C 1.37872 * 120.00335 * 180.02562 * 18 17 16 21 21 N 1.31519 * 120.00001 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00364 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46925 * 89.99899 * 22 20 18 24 24 H 1.48500 * 109.47444 * 209.99637 * 22 20 18 25 25 H 1.48499 * 109.46980 * 330.00059 * 22 20 18 26 26 C 1.38870 * 119.86024 * 0.27366 * 10 9 8 27 27 C 1.38108 * 119.92882 * 359.47543 * 26 10 9 28 28 H 1.09002 * 109.47002 * 60.00266 * 1 2 3 29 29 H 1.09002 * 109.47035 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47390 * 300.00171 * 1 2 3 31 31 H 0.96699 * 117.00070 * 180.02562 * 6 4 2 32 32 H 1.08002 * 119.96352 * 0.02562 * 8 7 2 33 33 H 1.08000 * 120.03471 * 179.97438 * 9 8 7 34 34 H 0.97001 * 120.00418 * 214.79990 * 11 10 9 35 35 H 1.09004 * 109.46916 * 300.00085 * 14 12 11 36 36 H 1.09007 * 109.47097 * 59.99341 * 14 12 11 37 37 H 1.09004 * 109.47338 * 300.00079 * 15 14 12 38 38 H 1.09004 * 109.46798 * 59.99628 * 15 14 12 39 39 H 1.08996 * 109.47269 * 300.00801 * 16 15 14 40 40 H 1.08998 * 109.46725 * 60.00380 * 16 15 14 41 41 H 1.09000 * 109.47462 * 299.99804 * 17 16 15 42 42 H 1.08998 * 109.47014 * 60.00519 * 17 16 15 43 43 H 0.96996 * 120.00055 * 180.02562 * 21 20 18 44 44 H 1.08003 * 120.03283 * 179.70452 * 26 10 9 45 45 H 1.07998 * 119.96440 * 180.25361 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.7270 -1.6928 1.1196 6 8 1.7081 -0.2518 2.4496 7 6 2.0323 -0.7104 -1.2305 8 6 2.8273 -0.0370 -2.1398 9 6 3.2887 -0.6850 -3.2687 10 6 2.9540 -2.0146 -3.4899 11 7 3.4195 -2.6739 -4.6330 12 6 4.6416 -2.3888 -5.1246 13 8 5.3016 -1.4992 -4.6307 14 6 5.1880 -3.1754 -6.2881 15 6 6.5810 -2.6543 -6.6469 16 6 7.1360 -3.4533 -7.8278 17 6 8.5293 -2.9326 -8.1861 18 6 9.0757 -3.7192 -9.3496 19 1 8.4878 -4.5111 -9.7898 20 6 10.3261 -3.4280 -9.8522 21 7 11.0418 -2.4634 -9.3166 22 14 11.0037 -4.4035 -11.2940 23 1 10.6119 -3.7441 -12.5656 24 1 12.4847 -4.4596 -11.2015 25 1 10.4530 -5.7822 -11.2612 26 6 2.1513 -2.6865 -2.5774 27 6 1.6973 -2.0343 -1.4479 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 2.0541 -0.7406 3.2088 32 1 3.0875 0.9969 -1.9669 33 1 3.9092 -0.1584 -3.9787 34 1 2.8642 -3.3389 -5.0693 35 1 5.2528 -4.2290 -6.0161 36 1 4.5258 -3.0620 -7.1465 37 1 6.5159 -1.6008 -6.9191 38 1 7.2434 -2.7675 -5.7886 39 1 7.2012 -4.5067 -7.5552 40 1 6.4738 -3.3405 -8.6861 41 1 8.4645 -1.8792 -8.4586 42 1 9.1913 -3.0458 -7.3276 43 1 11.9214 -2.2583 -9.6704 44 1 1.8853 -3.7191 -2.7491 45 1 1.0764 -2.5575 -0.7358 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589504823.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:02:11 Heat of formation + Delta-G solvation = -153.544061 kcal Electronic energy + Delta-G solvation = -25083.319625 eV Core-core repulsion = 21256.597162 eV Total energy + Delta-G solvation = -3826.722463 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.82113 -41.29092 -39.63836 -37.16577 -36.75163 -36.26460 -34.67603 -34.29070 -31.94362 -31.65276 -29.60693 -27.45046 -26.05612 -24.71664 -23.96216 -23.26653 -21.86918 -21.43627 -21.08810 -19.00394 -18.79772 -18.40635 -18.02993 -17.59744 -16.97069 -16.94081 -16.51726 -16.33623 -15.85445 -15.55026 -15.23664 -14.84718 -14.54294 -14.50781 -14.30477 -14.15183 -13.80173 -13.60416 -13.49416 -13.24823 -13.18693 -12.82129 -12.76942 -12.52489 -12.39274 -12.34618 -12.16342 -12.14458 -11.99712 -11.45012 -11.39714 -11.35244 -11.27955 -11.11883 -10.75146 -10.55146 -9.87455 -9.08622 -8.18878 -6.31138 0.17702 0.45394 1.21243 1.40208 1.42547 1.53581 1.53863 2.00576 2.17706 2.41842 2.86821 3.13816 3.49496 3.68512 3.84683 3.99268 4.05209 4.12607 4.14338 4.21159 4.41935 4.43181 4.56229 4.59834 4.67520 4.71063 4.82484 4.86525 4.88229 4.93964 5.05538 5.17938 5.23033 5.31397 5.32271 5.36904 5.37435 5.50391 5.57108 5.58097 5.62722 5.77966 5.88027 6.03774 6.24993 6.42118 6.87497 6.99859 7.13188 7.38548 8.93313 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.034869 B = 0.001701 C = 0.001673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.817497 B =16454.549343 C =16735.089000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.037 4.037 3 H 0.134 0.866 4 C 0.484 3.516 5 O -0.546 6.546 6 O -0.509 6.509 7 C -0.103 4.103 8 C -0.095 4.095 9 C -0.148 4.148 10 C 0.135 3.865 11 N -0.663 5.663 12 C 0.511 3.489 13 O -0.564 6.564 14 C -0.125 4.125 15 C -0.097 4.097 16 C -0.096 4.096 17 C 0.017 3.983 18 C -0.542 4.542 19 H 0.067 0.933 20 C -0.008 4.008 21 N -0.938 5.938 22 Si 0.970 3.030 23 H -0.271 1.271 24 H -0.284 1.284 25 H -0.259 1.259 26 C -0.146 4.146 27 C -0.074 4.074 28 H 0.084 0.916 29 H 0.062 0.938 30 H 0.085 0.915 31 H 0.426 0.574 32 H 0.142 0.858 33 H 0.118 0.882 34 H 0.430 0.570 35 H 0.123 0.877 36 H 0.126 0.874 37 H 0.045 0.955 38 H 0.041 0.959 39 H 0.061 0.939 40 H 0.063 0.937 41 H -0.015 1.015 42 H -0.016 1.016 43 H 0.263 0.737 44 H 0.150 0.850 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.610 2.309 20.883 36.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.056 4.056 3 H 0.152 0.848 4 C 0.327 3.673 5 O -0.436 6.436 6 O -0.322 6.322 7 C -0.104 4.104 8 C -0.114 4.114 9 C -0.168 4.168 10 C 0.041 3.959 11 N -0.310 5.310 12 C 0.300 3.700 13 O -0.441 6.441 14 C -0.164 4.164 15 C -0.135 4.135 16 C -0.133 4.133 17 C -0.020 4.020 18 C -0.580 4.580 19 H 0.085 0.915 20 C -0.205 4.205 21 N -0.578 5.578 22 Si 0.794 3.206 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.183 1.183 26 C -0.166 4.166 27 C -0.093 4.093 28 H 0.103 0.897 29 H 0.081 0.919 30 H 0.104 0.896 31 H 0.288 0.712 32 H 0.159 0.841 33 H 0.136 0.864 34 H 0.269 0.731 35 H 0.141 0.859 36 H 0.144 0.856 37 H 0.064 0.936 38 H 0.060 0.940 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.004 0.996 42 H 0.002 0.998 43 H 0.071 0.929 44 H 0.168 0.832 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -28.921 2.923 20.812 35.751 hybrid contribution 1.253 -0.705 -0.320 1.472 sum -27.668 2.219 20.492 34.502 Atomic orbital electron populations 1.21809 0.89170 1.03587 1.04733 1.19968 0.99712 1.00482 0.85434 0.84798 1.23682 0.76129 0.81891 0.85562 1.90771 1.37142 1.27908 1.87744 1.84479 1.71905 1.59066 1.16794 1.19464 0.99985 0.94970 0.95968 1.21096 0.96081 1.00762 0.93418 1.21282 1.01740 0.93854 0.99920 1.18025 0.97460 0.91565 0.88841 1.43490 1.17403 1.42629 1.27429 1.21492 0.80349 0.83394 0.84716 1.90703 1.59629 1.32758 1.61049 1.21694 0.97293 1.01249 0.96157 1.21259 0.95115 0.99326 0.97817 1.21444 0.96162 0.98986 0.96728 1.19067 0.93268 0.94874 0.94768 1.21766 1.01870 1.18197 1.16167 0.91502 1.26104 0.97549 0.96421 1.00404 1.70135 1.12210 1.32116 1.43363 0.85373 0.77171 0.79268 0.78769 1.19665 1.21001 1.18321 1.21100 1.00952 1.00810 0.93747 1.20893 0.98610 0.93800 0.95958 0.89736 0.91894 0.89646 0.71198 0.84072 0.86427 0.73077 0.85923 0.85574 0.93598 0.93987 0.92053 0.91813 0.99649 0.99803 0.92879 0.83192 0.84792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 8.94 71.98 0.64 -0.28 16 2 C -0.04 -0.43 3.00 -12.29 -0.04 -0.47 16 3 H 0.13 1.08 7.87 -2.39 -0.02 1.06 16 4 C 0.48 7.28 7.49 71.23 0.53 7.82 16 5 O -0.55 -12.77 15.86 21.94 0.35 -12.42 16 6 O -0.51 -4.64 13.33 -51.41 -0.69 -5.33 16 7 C -0.10 -1.80 4.40 -19.84 -0.09 -1.89 16 8 C -0.10 -1.95 9.66 22.25 0.21 -1.73 16 9 C -0.15 -3.79 8.70 22.39 0.19 -3.60 16 10 C 0.14 3.07 6.30 38.15 0.24 3.31 16 11 N -0.66 -13.18 5.34 -303.49 -1.62 -14.80 16 12 C 0.51 13.84 7.68 87.66 0.67 14.51 16 13 O -0.56 -20.87 13.41 -3.04 -0.04 -20.92 16 14 C -0.12 -2.95 5.70 29.85 0.17 -2.78 16 15 C -0.10 -3.46 4.50 30.59 0.14 -3.32 16 16 C -0.10 -3.88 5.15 30.59 0.16 -3.72 16 17 C 0.02 0.96 4.97 29.85 0.15 1.11 16 18 C -0.54 -31.57 9.11 25.60 0.23 -31.33 16 19 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 20 C -0.01 -0.45 5.46 84.65 0.46 0.01 16 21 N -0.94 -59.38 13.29 21.45 0.28 -59.09 16 22 Si 0.97 45.01 29.54 68.60 2.03 47.04 16 23 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 24 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 25 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 26 C -0.15 -2.65 9.97 22.39 0.22 -2.43 16 27 C -0.07 -1.31 7.92 22.25 0.18 -1.13 16 28 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.06 0.44 7.38 -2.39 -0.02 0.43 16 30 H 0.08 0.39 8.11 -2.39 -0.02 0.37 16 31 H 0.43 0.85 9.10 -74.06 -0.67 0.18 16 32 H 0.14 2.26 7.94 -2.91 -0.02 2.24 16 33 H 0.12 3.58 6.21 -2.91 -0.02 3.56 16 34 H 0.43 4.85 8.82 -92.71 -0.82 4.03 16 35 H 0.12 2.28 8.14 -2.38 -0.02 2.26 16 36 H 0.13 2.24 8.14 -2.38 -0.02 2.22 16 37 H 0.05 1.78 8.10 -2.38 -0.02 1.76 16 38 H 0.04 1.66 8.10 -2.38 -0.02 1.64 16 39 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 40 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 41 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 42 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 43 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 44 H 0.15 1.88 8.06 -2.91 -0.02 1.86 16 45 H 0.13 1.95 7.51 -2.91 -0.02 1.93 16 Total: -1.00 -84.49 381.30 3.92 -80.58 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -0.48 Total: 10.87 kcal Atomic # 6 Polarization: -30.01 SS G_CDS: 4.08 Total: -25.93 kcal Atomic # 7 Polarization: -72.56 SS G_CDS: -1.34 Total: -73.89 kcal Atomic # 8 Polarization: -38.29 SS G_CDS: -0.38 Total: -38.67 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -84.49 3.92 -80.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589504823.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.969 kcal (2) G-P(sol) polarization free energy of solvation -84.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds