Wall clock time and date at job start Sat Apr 11 2020 00:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47649 * 2 1 4 4 C 1.53002 * 109.46687 * 119.99877 * 2 1 3 5 5 C 1.50706 * 109.47153 * 294.99260 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47364 * 179.72558 * 9 7 5 11 11 H 1.48508 * 109.46883 * 299.72681 * 9 7 5 12 12 H 1.48497 * 109.46870 * 59.72491 * 9 7 5 13 13 C 1.53005 * 109.47080 * 239.99305 * 2 1 3 14 14 N 1.46897 * 109.46940 * 65.00472 * 13 2 1 15 15 C 1.46900 * 110.99727 * 179.97438 * 14 13 2 16 16 C 1.50701 * 109.46738 * 179.97438 * 15 14 13 17 17 C 1.38357 * 119.86557 * 269.72789 * 16 15 14 18 18 C 1.38014 * 120.16753 * 179.72667 * 17 16 15 19 19 C 1.39304 * 119.90539 * 0.57127 * 18 17 16 20 20 C 1.48435 * 120.12981 * 179.72694 * 19 18 17 21 21 N 1.34054 * 126.67310 * 179.66329 * 20 19 18 22 22 N 1.28983 * 107.26710 * 179.83475 * 21 20 19 23 23 N 1.28729 * 108.94320 * 0.43541 * 22 21 20 24 24 H 0.97006 * 125.34206 * 179.74368 * 23 22 21 25 25 N 1.28872 * 109.32230 * 359.72159 * 23 22 21 26 26 C 1.39494 * 119.73912 * 359.70174 * 19 18 17 27 27 F 1.35099 * 120.08922 * 180.02562 * 26 19 18 28 28 C 1.38247 * 119.86847 * 90.00416 * 16 15 14 29 29 H 1.09000 * 109.47309 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46932 * 300.00791 * 1 2 3 31 31 H 1.09001 * 109.46866 * 60.00233 * 1 2 3 32 32 H 1.09004 * 109.47178 * 175.00050 * 4 2 1 33 33 H 1.08993 * 109.47411 * 54.99732 * 4 2 1 34 34 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 35 35 H 1.08997 * 109.46867 * 185.00573 * 13 2 1 36 36 H 1.09001 * 109.46919 * 305.00269 * 13 2 1 37 37 H 1.00902 * 110.99988 * 303.95038 * 14 13 2 38 38 H 1.08995 * 109.47492 * 299.99990 * 15 14 13 39 39 H 1.09003 * 109.47169 * 60.00204 * 15 14 13 40 40 H 1.07994 * 119.91975 * 0.02562 * 17 16 15 41 41 H 1.07996 * 120.04697 * 180.27130 * 18 17 16 42 42 H 1.07995 * 119.95263 * 359.97438 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6413 0.0572 2.4766 6 1 1.0801 0.9744 2.3756 7 6 1.9931 -0.4014 3.7283 8 7 2.6720 -1.5211 3.8516 9 14 1.4984 0.5631 5.2497 10 1 1.9882 -0.1399 6.4625 11 1 2.0952 1.9217 5.1901 12 1 0.0187 0.6744 5.3057 13 6 2.0400 -0.7214 -1.2492 14 7 1.6515 0.0372 -2.4456 15 6 2.1259 -0.6269 -3.6670 16 6 1.7089 0.1782 -4.8708 17 6 0.4959 -0.0786 -5.4849 18 6 0.1053 0.6587 -6.5842 19 6 0.9399 1.6559 -7.0839 20 6 0.5274 2.4478 -8.2697 21 7 1.2203 3.4362 -8.8529 22 7 0.5189 3.8591 -9.8493 23 7 -0.5772 3.1864 -9.9043 24 1 -1.2802 3.3118 -10.5609 25 7 -0.5940 2.3198 -8.9506 26 6 2.1644 1.9077 -6.4652 27 9 2.9791 2.8735 -6.9435 28 6 2.5424 1.1665 -5.3605 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5140 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 3.1263 -0.7995 1.2057 33 1 1.6053 -1.7197 1.2953 34 1 2.9286 -2.0221 3.0617 35 1 3.1263 -0.7997 -1.2054 36 1 1.6053 -1.7200 -1.2950 37 1 0.6529 0.1791 -2.4753 38 1 3.2127 -0.7042 -3.6399 39 1 1.6921 -1.6250 -3.7299 40 1 -0.1490 -0.8547 -5.1001 41 1 -0.8438 0.4596 -7.0594 42 1 3.4898 1.3599 -4.8796 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589803184.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:02:17 Heat of formation + Delta-G solvation = 85.644694 kcal Electronic energy + Delta-G solvation = -24986.510635 eV Core-core repulsion = 21111.285372 eV Total energy + Delta-G solvation = -3875.225263 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.150 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.04993 -44.81840 -39.64778 -37.11528 -35.05232 -34.50705 -33.66875 -32.23585 -31.05474 -30.58053 -27.06303 -26.45632 -25.14710 -24.78243 -23.40379 -22.91363 -22.25662 -21.40293 -19.68771 -19.29580 -17.53146 -17.46464 -16.85393 -16.76011 -16.63248 -15.79575 -15.66003 -14.66457 -14.57781 -14.40355 -14.11828 -13.92666 -13.69625 -13.51431 -13.21057 -12.81235 -12.67632 -12.47288 -12.14529 -12.03082 -11.73791 -11.69234 -11.62443 -11.40359 -11.26524 -11.24340 -11.04072 -10.69896 -10.26743 -10.07714 -9.87175 -9.48697 -9.22808 -8.92091 -8.48334 -8.31199 -8.28254 -6.31954 -4.00192 0.21782 0.80202 0.87503 1.84163 1.92772 3.22215 3.24991 3.45984 3.47915 3.66359 3.70747 3.91549 4.27751 4.42525 4.56329 4.62242 4.81487 4.86576 4.96036 5.07812 5.18458 5.34772 5.44163 5.53460 5.62805 5.65123 5.67739 5.76457 5.84390 5.92624 5.97884 6.11403 6.16639 6.32999 6.42930 6.46125 6.76505 6.99339 7.01519 7.16314 7.41654 7.46284 7.60302 7.76580 8.26799 8.50723 8.92984 9.71096 11.08425 Molecular weight = 319.15amu Principal moments of inertia in cm(-1) A = 0.027996 B = 0.001922 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.891821 B =14562.453366 C =14638.666103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.078 4.078 3 H 0.068 0.932 4 C 0.015 3.985 5 C -0.594 4.594 6 H 0.050 0.950 7 C 0.012 3.988 8 N -0.915 5.915 9 Si 1.067 2.933 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.289 1.289 13 C 0.063 3.937 14 N -0.684 5.684 15 C 0.090 3.910 16 C -0.024 4.024 17 C -0.129 4.129 18 C -0.050 4.050 19 C -0.063 4.063 20 C 0.221 3.779 21 N -0.257 5.257 22 N -0.049 5.049 23 N -0.228 5.228 24 H 0.476 0.524 25 N -0.292 5.292 26 C 0.144 3.856 27 F -0.117 7.117 28 C -0.135 4.135 29 H 0.040 0.960 30 H 0.064 0.936 31 H 0.033 0.967 32 H 0.006 0.994 33 H 0.005 0.995 34 H 0.268 0.732 35 H 0.069 0.931 36 H 0.026 0.974 37 H 0.341 0.659 38 H 0.086 0.914 39 H 0.044 0.956 40 H 0.136 0.864 41 H 0.142 0.858 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.983 4.170 -28.570 29.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.097 4.097 3 H 0.086 0.914 4 C -0.023 4.023 5 C -0.632 4.632 6 H 0.068 0.932 7 C -0.191 4.191 8 N -0.552 5.552 9 Si 0.896 3.104 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.215 1.215 13 C -0.065 4.065 14 N -0.316 5.316 15 C -0.039 4.039 16 C -0.026 4.026 17 C -0.148 4.148 18 C -0.071 4.071 19 C -0.068 4.068 20 C -0.059 4.059 21 N -0.130 5.130 22 N -0.045 5.045 23 N -0.074 5.074 24 H 0.330 0.670 25 N -0.144 5.144 26 C 0.122 3.878 27 F -0.096 7.096 28 C -0.155 4.155 29 H 0.059 0.941 30 H 0.083 0.917 31 H 0.052 0.948 32 H 0.024 0.976 33 H 0.023 0.977 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.044 0.956 37 H 0.160 0.840 38 H 0.104 0.896 39 H 0.062 0.938 40 H 0.154 0.846 41 H 0.159 0.841 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -6.241 5.115 -27.361 28.526 hybrid contribution -1.128 -0.783 -2.003 2.428 sum -7.369 4.332 -29.364 30.583 Atomic orbital electron populations 1.21737 0.96441 1.00427 1.00522 1.21092 0.95043 1.00106 0.93423 0.91394 1.19240 0.95382 0.95407 0.92245 1.22027 1.38660 1.10277 0.92261 0.93203 1.25825 0.94746 0.97157 1.01398 1.70785 1.36259 1.14692 1.33461 0.83568 0.76008 0.75197 0.75661 1.20875 1.21466 1.21535 1.22190 1.00490 0.94460 0.89361 1.60611 1.20018 1.50278 1.00684 1.20988 1.01558 0.94105 0.87242 1.19918 0.93165 0.94366 0.95121 1.21079 0.96567 1.00957 0.96177 1.20996 0.98615 0.92339 0.95108 1.17228 0.95667 0.99664 0.94196 1.23432 0.88376 0.96070 0.98027 1.76277 1.23535 1.10204 1.02958 1.78958 0.93580 1.16916 1.15012 1.47735 1.16689 1.21076 1.21880 0.66991 1.74894 1.22779 1.14518 1.02191 1.17560 0.87897 0.88383 0.93954 1.91596 1.70939 1.59923 1.87103 1.21031 1.02446 0.96489 0.95502 0.94083 0.91691 0.94782 0.97559 0.97668 0.92205 0.91297 0.95623 0.83957 0.89597 0.93788 0.84600 0.84057 0.83501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.43 8.77 37.16 0.33 -2.10 16 2 C -0.08 -1.54 2.55 -90.62 -0.23 -1.77 16 3 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 4 C 0.01 0.37 3.76 -27.88 -0.10 0.26 16 5 C -0.59 -16.64 8.41 -34.44 -0.29 -16.93 16 6 H 0.05 1.38 7.06 -52.49 -0.37 1.01 16 7 C 0.01 0.35 5.46 -17.82 -0.10 0.25 16 8 N -0.92 -28.02 13.65 55.43 0.76 -27.26 16 9 Si 1.07 25.35 29.90 -169.99 -5.08 20.26 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 13 C 0.06 1.01 5.14 -3.82 -0.02 0.99 16 14 N -0.68 -9.02 6.49 -115.06 -0.75 -9.77 16 15 C 0.09 0.93 5.81 -4.98 -0.03 0.90 16 16 C -0.02 -0.23 5.39 -104.57 -0.56 -0.80 16 17 C -0.13 -1.06 9.68 -39.62 -0.38 -1.45 16 18 C -0.05 -0.43 9.70 -39.27 -0.38 -0.81 16 19 C -0.06 -0.66 5.88 -104.83 -0.62 -1.28 16 20 C 0.22 2.42 7.92 -156.31 -1.24 1.19 16 21 N -0.26 -3.12 11.23 32.15 0.36 -2.76 16 22 N -0.05 -0.48 13.47 60.35 0.81 0.34 16 23 N -0.23 -1.47 7.90 60.35 0.48 -0.99 16 24 H 0.48 0.63 8.96 -340.36 -3.05 -2.42 16 25 N -0.29 -2.57 12.08 32.17 0.39 -2.18 16 26 C 0.14 1.61 7.28 -39.09 -0.28 1.33 16 27 F -0.12 -1.49 15.83 2.25 0.04 -1.45 16 28 C -0.14 -1.39 9.66 -39.56 -0.38 -1.77 16 29 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 1.30 6.95 -51.93 -0.36 0.94 16 31 H 0.03 0.51 6.68 -51.93 -0.35 0.16 16 32 H 0.01 0.16 8.01 -51.93 -0.42 -0.25 16 33 H 0.01 0.13 8.00 -51.93 -0.42 -0.28 16 34 H 0.27 8.14 7.22 -40.82 -0.29 7.84 16 35 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.34 4.29 6.98 -39.29 -0.27 4.02 16 38 H 0.09 0.87 8.08 -51.93 -0.42 0.45 16 39 H 0.04 0.41 8.08 -51.93 -0.42 -0.01 16 40 H 0.14 0.87 8.06 -52.49 -0.42 0.44 16 41 H 0.14 0.95 7.88 -52.49 -0.41 0.54 16 42 H 0.15 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 359.88 15.07 5.42 5.42 Total: -1.00 -33.59 359.88 -9.98 -43.58 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -8.11 Total: -3.22 kcal Atomic # 6 Polarization: -17.68 SS G_CDS: -4.29 Total: -21.97 kcal Atomic # 7 Polarization: -44.67 SS G_CDS: 2.05 Total: -42.62 kcal Atomic # 9 Polarization: -1.49 SS G_CDS: 0.04 Total: -1.45 kcal Atomic # 14 Polarization: 25.35 SS G_CDS: -5.08 Total: 20.26 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.59 -9.98 -43.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589803184.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.224 kcal (2) G-P(sol) polarization free energy of solvation -33.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds