Wall clock time and date at job start Sat Apr 11 2020 00:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.46734 * 2 1 4 4 C 1.50700 * 109.46957 * 119.99606 * 2 1 3 5 5 H 1.07993 * 120.00151 * 120.00370 * 4 2 1 6 6 C 1.37874 * 120.00092 * 299.99670 * 4 2 1 7 7 N 1.31513 * 120.00178 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00128 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.46744 * 60.00510 * 8 6 4 10 10 H 1.48505 * 109.47034 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47349 * 300.00391 * 8 6 4 12 12 C 1.50700 * 109.47045 * 239.99627 * 2 1 3 13 13 O 1.21278 * 119.99791 * 252.26061 * 12 2 1 14 14 N 1.34774 * 120.00007 * 72.26365 * 12 2 1 15 15 C 1.46500 * 119.99824 * 0.81041 * 14 12 2 16 16 C 1.52997 * 109.47157 * 261.49960 * 15 14 12 17 17 C 1.52999 * 109.47369 * 173.49259 * 16 15 14 18 18 C 1.50694 * 109.47633 * 179.97438 * 17 16 15 19 19 O 1.20829 * 119.99727 * 0.02562 * 18 17 16 20 20 O 1.34227 * 120.00567 * 180.02562 * 18 17 16 21 21 C 1.46496 * 119.99913 * 180.81109 * 14 12 2 22 22 C 1.50697 * 109.47570 * 270.00141 * 21 14 12 23 23 C 1.38228 * 120.00435 * 89.99427 * 22 21 14 24 24 C 1.38237 * 120.00359 * 179.97438 * 23 22 21 25 25 C 1.38233 * 119.99672 * 0.07418 * 24 23 22 26 26 C 1.38237 * 120.00313 * 359.90691 * 25 24 23 27 27 C 1.38233 * 119.99637 * 0.04717 * 26 25 24 28 28 H 1.08991 * 109.47198 * 43.33058 * 1 2 3 29 29 H 1.09003 * 109.46901 * 163.33445 * 1 2 3 30 30 H 1.09004 * 109.47019 * 283.32398 * 1 2 3 31 31 H 0.97003 * 120.00165 * 179.97438 * 7 6 4 32 32 H 1.08996 * 109.47372 * 21.49873 * 15 14 12 33 33 H 1.09004 * 109.46803 * 141.50501 * 15 14 12 34 34 H 1.09001 * 109.47430 * 293.49084 * 16 15 14 35 35 H 1.09003 * 109.47392 * 53.49163 * 16 15 14 36 36 H 1.08995 * 109.47513 * 300.00487 * 17 16 15 37 37 H 1.09009 * 109.46738 * 60.00019 * 17 16 15 38 38 H 0.96696 * 117.00589 * 180.02562 * 20 18 17 39 39 H 1.08997 * 109.47142 * 149.99598 * 21 14 12 40 40 H 1.08998 * 109.47187 * 30.00297 * 21 14 12 41 41 H 1.08007 * 119.99499 * 359.70846 * 23 22 21 42 42 H 1.08003 * 119.99895 * 179.97438 * 24 23 22 43 43 H 1.08000 * 119.99434 * 179.97438 * 25 24 23 44 44 H 1.07993 * 119.99797 * 180.02562 * 26 25 24 45 45 H 1.08000 * 119.99967 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6993 -0.2392 2.4827 7 7 0.9429 0.8299 2.6034 8 14 2.3225 -1.1192 4.0081 9 1 3.8075 -1.1186 4.0078 10 1 1.8269 -0.4195 5.2205 11 1 1.8281 -2.5195 4.0084 12 6 2.0324 -0.7105 -1.2304 13 8 2.5362 -1.8093 -1.1329 14 7 1.9217 -0.1247 -2.4392 15 6 1.3293 1.2102 -2.5548 16 6 -0.1370 1.0830 -2.9724 17 6 -0.7992 2.4618 -2.9360 18 6 -2.2433 2.3367 -3.3479 19 8 -2.6966 1.2554 -3.6402 20 8 -3.0261 3.4262 -3.3902 21 6 2.3939 -0.8229 -3.6374 22 6 3.8402 -0.4781 -3.8827 23 6 4.8397 -1.2500 -3.3207 24 6 6.1665 -0.9339 -3.5462 25 6 6.4936 0.1549 -4.3325 26 6 5.4940 0.9267 -4.8948 27 6 4.1673 0.6100 -4.6701 28 1 -0.3633 0.7475 -0.7051 29 1 -0.3633 -0.9845 -0.2947 30 1 -0.3633 0.2368 1.0000 31 1 0.7082 1.1611 3.4844 32 1 1.3903 1.7193 -1.5929 33 1 1.8723 1.7848 -3.3052 34 1 -0.1932 0.6796 -3.9835 35 1 -0.6539 0.4134 -2.2849 36 1 -0.7430 2.8653 -1.9250 37 1 -0.2823 3.1313 -3.6236 38 1 -3.9455 3.2961 -3.6600 39 1 1.7965 -0.5159 -4.4958 40 1 2.2963 -1.8989 -3.4931 41 1 4.5841 -2.0975 -2.7019 42 1 6.9474 -1.5368 -3.1068 43 1 7.5301 0.4021 -4.5083 44 1 5.7496 1.7771 -5.5094 45 1 3.3864 1.2132 -5.1091 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592210134.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:02:23 Heat of formation + Delta-G solvation = -109.721952 kcal Electronic energy + Delta-G solvation = -27276.512358 eV Core-core repulsion = 23451.690164 eV Total energy + Delta-G solvation = -3824.822194 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.31231 -39.68253 -38.51087 -36.34991 -35.62154 -34.04408 -33.12118 -31.41456 -30.73317 -30.15670 -27.45142 -25.93562 -25.18467 -22.99151 -22.41182 -22.25791 -20.94757 -20.68968 -18.50387 -18.00562 -16.80629 -16.52243 -16.48655 -16.18875 -15.80385 -15.42396 -15.20685 -14.75532 -14.51752 -14.27109 -14.00158 -13.32460 -13.25380 -13.04941 -12.82384 -12.61164 -12.36103 -12.17693 -12.10612 -11.70886 -11.56478 -11.47015 -11.32901 -11.08483 -10.98319 -10.80197 -10.78453 -10.70837 -10.60878 -10.31161 -10.23527 -9.96469 -8.94276 -8.84923 -8.75846 -8.47010 -8.22108 -8.14557 -6.02575 -4.05817 1.45391 1.56696 2.18516 2.96400 3.36450 3.38914 3.43989 3.60564 3.70693 4.09730 4.47190 4.83532 4.91764 4.97371 4.98792 5.11239 5.13820 5.23051 5.30573 5.35408 5.44708 5.58366 5.59743 5.64016 5.77953 5.81214 5.89984 6.07848 6.11626 6.16995 6.25871 6.33373 6.45395 6.57537 6.67235 6.67555 6.81767 6.87521 6.96365 7.10412 7.16591 7.41638 7.79043 7.84230 7.96660 8.11997 8.39283 9.01746 9.21654 9.59297 11.04292 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.006437 B = 0.006068 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4348.558457 B = 4613.113425 C = 8291.091108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.033 3.967 3 H 0.048 0.952 4 C -0.498 4.498 5 H 0.071 0.929 6 C 0.058 3.942 7 N -0.896 5.896 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.523 3.477 13 O -0.540 6.540 14 N -0.619 5.619 15 C 0.113 3.887 16 C -0.137 4.137 17 C -0.112 4.112 18 C 0.479 3.521 19 O -0.515 6.515 20 O -0.521 6.521 21 C 0.152 3.848 22 C -0.097 4.097 23 C -0.092 4.092 24 C -0.124 4.124 25 C -0.124 4.124 26 C -0.128 4.128 27 C -0.111 4.111 28 H 0.027 0.973 29 H 0.024 0.976 30 H 0.094 0.906 31 H 0.261 0.739 32 H 0.096 0.904 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.093 0.907 36 H 0.114 0.886 37 H 0.105 0.895 38 H 0.407 0.593 39 H 0.076 0.924 40 H 0.087 0.913 41 H 0.130 0.870 42 H 0.119 0.881 43 H 0.116 0.884 44 H 0.117 0.883 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.463 6.489 -15.843 17.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.013 3.987 3 H 0.066 0.934 4 C -0.537 4.537 5 H 0.089 0.911 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.202 1.202 12 C 0.315 3.685 13 O -0.416 6.416 14 N -0.353 5.353 15 C -0.011 4.011 16 C -0.176 4.176 17 C -0.150 4.150 18 C 0.321 3.679 19 O -0.403 6.403 20 O -0.332 6.332 21 C 0.029 3.971 22 C -0.098 4.098 23 C -0.111 4.111 24 C -0.142 4.142 25 C -0.142 4.142 26 C -0.146 4.146 27 C -0.129 4.129 28 H 0.046 0.954 29 H 0.043 0.957 30 H 0.112 0.888 31 H 0.071 0.929 32 H 0.114 0.886 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.111 0.889 36 H 0.132 0.868 37 H 0.123 0.877 38 H 0.265 0.735 39 H 0.094 0.906 40 H 0.105 0.895 41 H 0.148 0.852 42 H 0.137 0.863 43 H 0.134 0.866 44 H 0.135 0.865 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 0.938 5.734 -15.573 16.622 hybrid contribution -0.330 -0.327 0.607 0.765 sum 0.608 5.408 -14.966 15.924 Atomic orbital electron populations 1.21945 0.96406 0.97721 1.03615 1.18845 0.94155 0.96556 0.89182 0.93404 1.21108 1.30844 1.12665 0.89062 0.91076 1.24921 0.95179 0.95097 0.99008 1.69865 1.37000 1.23056 1.23603 0.86545 0.79255 0.79804 0.81768 1.20252 1.21383 1.20211 1.22036 0.76264 0.85985 0.84201 1.90504 1.44054 1.21244 1.85769 1.48195 1.62279 1.18199 1.06634 1.21508 0.91529 0.84680 1.03350 1.22127 0.96434 0.95353 1.03664 1.21335 0.87563 1.00954 1.05154 1.23637 0.89725 0.81234 0.73266 1.90737 1.75580 1.28752 1.45193 1.84551 1.27536 1.39570 1.81590 1.20223 0.89680 0.98881 0.88315 1.20360 0.96452 0.95748 0.97257 1.21298 0.92309 0.99855 0.97611 1.21176 0.96490 0.97666 0.98840 1.21103 0.98999 0.95850 0.98271 1.21047 0.93016 0.99827 1.00737 1.21005 0.96226 0.96789 0.98911 0.95414 0.95698 0.88762 0.92939 0.88599 0.91448 0.91319 0.88883 0.86797 0.87697 0.73455 0.90579 0.89469 0.85245 0.86324 0.86563 0.86491 0.86464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 8.20 37.16 0.30 -2.84 16 2 C 0.03 0.81 1.80 -92.92 -0.17 0.64 16 3 H 0.05 1.19 6.72 -51.93 -0.35 0.84 16 4 C -0.50 -13.95 8.36 -34.44 -0.29 -14.24 16 5 H 0.07 2.11 6.82 -52.49 -0.36 1.75 16 6 C 0.06 1.60 5.21 -17.82 -0.09 1.51 16 7 N -0.90 -24.66 11.35 55.43 0.63 -24.03 16 8 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 C 0.52 11.66 6.85 -10.99 -0.08 11.59 16 13 O -0.54 -13.61 14.61 5.56 0.08 -13.53 16 14 N -0.62 -10.60 2.46 -175.07 -0.43 -11.03 16 15 C 0.11 1.55 4.89 -4.04 -0.02 1.53 16 16 C -0.14 -1.75 3.95 -26.73 -0.11 -1.86 16 17 C -0.11 -1.15 5.81 -27.89 -0.16 -1.31 16 18 C 0.48 5.61 8.33 36.00 0.30 5.91 16 19 O -0.51 -7.83 16.74 -18.75 -0.31 -8.14 16 20 O -0.52 -4.76 13.42 -39.25 -0.53 -5.29 16 21 C 0.15 2.27 5.53 -5.20 -0.03 2.24 16 22 C -0.10 -1.42 5.46 -104.63 -0.57 -1.99 16 23 C -0.09 -1.45 9.70 -39.59 -0.38 -1.84 16 24 C -0.12 -1.70 10.05 -39.58 -0.40 -2.10 16 25 C -0.12 -1.51 10.05 -39.58 -0.40 -1.90 16 26 C -0.13 -1.50 10.05 -39.58 -0.40 -1.90 16 27 C -0.11 -1.38 9.70 -39.58 -0.38 -1.76 16 28 H 0.03 0.52 4.44 -51.93 -0.23 0.29 16 29 H 0.02 0.56 8.02 -51.93 -0.42 0.14 16 30 H 0.09 2.40 5.81 -51.93 -0.30 2.09 16 31 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 32 H 0.10 1.45 5.51 -51.93 -0.29 1.17 16 33 H 0.07 0.75 8.13 -51.93 -0.42 0.32 16 34 H 0.07 0.84 8.01 -51.93 -0.42 0.43 16 35 H 0.09 1.47 5.59 -51.93 -0.29 1.18 16 36 H 0.11 1.15 8.14 -51.93 -0.42 0.72 16 37 H 0.10 0.78 8.14 -51.92 -0.42 0.36 16 38 H 0.41 2.08 9.10 45.56 0.41 2.50 16 39 H 0.08 0.92 7.93 -51.93 -0.41 0.51 16 40 H 0.09 1.43 7.38 -51.93 -0.38 1.05 16 41 H 0.13 2.26 7.53 -52.48 -0.40 1.86 16 42 H 0.12 1.42 8.06 -52.48 -0.42 1.00 16 43 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 44 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 45 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 371.21 15.07 5.59 5.59 Total: -1.00 -33.77 371.21 -8.37 -42.15 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -5.52 Total: 5.88 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: -2.87 Total: -8.31 kcal Atomic # 7 Polarization: -35.26 SS G_CDS: 0.20 Total: -35.07 kcal Atomic # 8 Polarization: -26.20 SS G_CDS: -0.76 Total: -26.96 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.77 -8.37 -42.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592210134.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.575 kcal (2) G-P(sol) polarization free energy of solvation -33.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds