Wall clock time and date at job start Sat Apr 11 2020 00:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47112 * 2 1 4 4 C 1.50697 * 109.46753 * 240.00789 * 2 1 3 5 5 H 1.08001 * 120.00161 * 239.99817 * 4 2 1 6 6 C 1.37880 * 120.00735 * 59.99743 * 4 2 1 7 7 N 1.31521 * 119.99549 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00492 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46971 * 179.97438 * 8 6 4 10 10 H 1.48496 * 109.47321 * 300.00175 * 8 6 4 11 11 H 1.48503 * 109.46761 * 60.00391 * 8 6 4 12 12 C 1.50693 * 109.47548 * 120.00519 * 2 1 3 13 13 O 1.21287 * 120.00116 * 108.46443 * 12 2 1 14 14 N 1.34775 * 119.99910 * 288.47187 * 12 2 1 15 15 C 1.46499 * 120.00013 * 6.62749 * 14 12 2 16 16 C 1.50706 * 109.46921 * 115.15326 * 15 14 12 17 17 C 1.38230 * 119.99846 * 303.78481 * 16 15 14 18 18 C 1.38233 * 119.99672 * 179.76735 * 17 16 15 19 19 C 1.38237 * 120.00221 * 0.51036 * 18 17 16 20 20 C 1.38235 * 119.99783 * 359.74309 * 19 18 17 21 21 C 1.38237 * 119.99608 * 124.06360 * 16 15 14 22 22 C 1.46499 * 119.99851 * 186.62988 * 14 12 2 23 23 C 1.53003 * 109.47221 * 59.95803 * 22 14 12 24 24 C 1.52998 * 109.47337 * 179.97438 * 22 14 12 25 25 C 1.50699 * 109.47343 * 299.95640 * 22 14 12 26 26 O 1.20826 * 120.00101 * 142.82499 * 25 22 14 27 27 O 1.34228 * 119.99827 * 322.82812 * 25 22 14 28 28 H 1.09002 * 109.47212 * 305.12224 * 1 2 3 29 29 H 1.09002 * 109.47522 * 65.11859 * 1 2 3 30 30 H 1.09002 * 109.47278 * 185.11876 * 1 2 3 31 31 H 0.96997 * 120.00069 * 179.97438 * 7 6 4 32 32 H 1.09005 * 109.47168 * 235.14851 * 15 14 12 33 33 H 1.08995 * 109.47243 * 355.15136 * 15 14 12 34 34 H 1.08001 * 120.00080 * 359.97438 * 17 16 15 35 35 H 1.08006 * 119.99999 * 180.23004 * 18 17 16 36 36 H 1.07993 * 120.00163 * 179.72479 * 19 18 17 37 37 H 1.08002 * 119.99881 * 179.97438 * 20 19 18 38 38 H 1.07992 * 120.00258 * 359.97438 * 21 16 15 39 39 H 1.09005 * 109.47344 * 63.89433 * 23 22 14 40 40 H 1.09001 * 109.47340 * 183.89415 * 23 22 14 41 41 H 1.09004 * 109.46938 * 303.89515 * 23 22 14 42 42 H 1.09007 * 109.46812 * 67.68862 * 24 22 14 43 43 H 1.08997 * 109.47598 * 187.68943 * 24 22 14 44 44 H 1.09002 * 109.47084 * 307.69166 * 24 22 14 45 45 H 0.96704 * 116.99963 * 185.01583 * 27 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7102 -1.2306 5 1 2.6531 -1.5884 -1.1317 6 6 1.6991 -0.2392 -2.4828 7 7 0.9434 0.8305 -2.6034 8 14 2.3223 -1.1192 -4.0081 9 1 1.8266 -0.4194 -5.2206 10 1 3.8072 -1.1186 -4.0080 11 1 1.8277 -2.5194 -4.0084 12 6 2.0324 -0.7105 1.2303 13 8 2.5482 -1.8037 1.1312 14 7 1.9084 -0.1311 2.4408 15 6 1.1580 1.1192 2.5811 16 6 -0.0622 0.8799 3.4326 17 6 -0.9756 -0.0935 3.0733 18 6 -2.0924 -0.3162 3.8570 19 6 -2.3012 0.4415 4.9941 20 6 -1.3904 1.4184 5.3505 21 6 -0.2709 1.6377 4.5697 22 6 2.5241 -0.7518 3.6164 23 6 4.0364 -0.8521 3.4069 24 6 2.2358 0.1013 4.8534 25 6 1.9516 -2.1317 3.8138 26 8 2.6613 -3.0310 4.1979 27 8 0.6532 -2.3619 3.5628 28 1 -0.3634 0.5912 0.8406 29 1 -0.3634 0.4324 -0.9323 30 1 -0.3634 -1.0236 0.0917 31 1 0.7093 1.1622 -3.4843 32 1 1.7896 1.8709 3.0546 33 1 0.8506 1.4709 1.5963 34 1 -0.8150 -0.6821 2.1822 35 1 -2.8042 -1.0793 3.5783 36 1 -3.1759 0.2705 5.6039 37 1 -1.5537 2.0107 6.2388 38 1 0.4406 2.4009 4.8482 39 1 4.4603 0.1494 3.3333 40 1 4.4861 -1.3759 4.2505 41 1 4.2402 -1.4015 2.4877 42 1 1.1708 0.0609 5.0824 43 1 2.8043 -0.2829 5.7003 44 1 2.5267 1.1335 4.6587 45 1 0.3145 -3.2426 3.7746 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592212693.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:02:25 Heat of formation + Delta-G solvation = -86.216616 kcal Electronic energy + Delta-G solvation = -29236.217567 eV Core-core repulsion = 25412.414640 eV Total energy + Delta-G solvation = -3823.802926 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.88338 -39.33741 -38.49903 -36.08077 -35.69581 -34.15795 -32.69377 -31.21722 -30.56615 -29.96783 -27.33783 -25.89679 -25.25459 -24.30567 -22.77303 -22.29893 -21.16368 -20.18188 -18.82782 -17.60097 -16.90757 -16.55059 -16.22395 -15.98224 -15.32797 -15.21095 -15.04137 -14.58134 -14.31201 -14.00227 -13.47572 -13.31757 -13.16377 -12.90824 -12.85905 -12.80235 -12.35721 -12.29967 -11.95939 -11.82600 -11.74568 -11.30392 -11.22810 -11.15137 -11.04325 -10.98236 -10.85159 -10.73403 -10.41302 -10.32061 -10.22479 -10.00169 -9.06151 -8.70665 -8.66230 -8.58716 -8.31942 -8.22795 -6.06142 -4.09727 1.43050 1.57814 2.48560 3.21267 3.34588 3.37283 3.39310 3.46349 3.65050 3.99458 4.44223 4.77945 4.83750 4.95588 4.99622 5.10593 5.25257 5.26946 5.32376 5.44486 5.59698 5.60913 5.68117 5.72190 5.81810 5.88165 5.90586 5.96600 6.11156 6.12407 6.22643 6.45387 6.55194 6.57929 6.66867 6.74466 6.79128 6.81835 6.89741 6.97852 7.14911 7.36782 7.71962 7.88079 8.04468 8.22591 8.30665 8.97556 9.08607 9.55753 11.00819 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.014099 B = 0.005296 C = 0.004444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.525710 B = 5285.996480 C = 6299.145885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.034 3.966 3 H 0.051 0.949 4 C -0.501 4.501 5 H 0.072 0.928 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.899 3.101 9 H -0.288 1.288 10 H -0.277 1.277 11 H -0.277 1.277 12 C 0.525 3.475 13 O -0.532 6.532 14 N -0.609 5.609 15 C 0.139 3.861 16 C -0.098 4.098 17 C -0.076 4.076 18 C -0.122 4.122 19 C -0.124 4.124 20 C -0.132 4.132 21 C -0.113 4.113 22 C 0.191 3.809 23 C -0.153 4.153 24 C -0.163 4.163 25 C 0.492 3.508 26 O -0.522 6.522 27 O -0.499 6.499 28 H 0.027 0.973 29 H 0.096 0.904 30 H 0.030 0.970 31 H 0.262 0.738 32 H 0.073 0.927 33 H 0.120 0.880 34 H 0.133 0.867 35 H 0.117 0.883 36 H 0.114 0.886 37 H 0.116 0.884 38 H 0.119 0.881 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.069 0.931 44 H 0.081 0.919 45 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.467 3.894 16.444 17.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.013 3.987 3 H 0.068 0.932 4 C -0.539 4.539 5 H 0.090 0.910 6 C -0.140 4.140 7 N -0.534 5.534 8 Si 0.727 3.273 9 H -0.213 1.213 10 H -0.202 1.202 11 H -0.202 1.202 12 C 0.317 3.683 13 O -0.407 6.407 14 N -0.347 5.347 15 C 0.016 3.984 16 C -0.099 4.099 17 C -0.094 4.094 18 C -0.140 4.140 19 C -0.142 4.142 20 C -0.150 4.150 21 C -0.132 4.132 22 C 0.104 3.896 23 C -0.211 4.211 24 C -0.220 4.220 25 C 0.333 3.667 26 O -0.410 6.410 27 O -0.309 6.309 28 H 0.046 0.954 29 H 0.114 0.886 30 H 0.049 0.951 31 H 0.072 0.928 32 H 0.092 0.908 33 H 0.137 0.863 34 H 0.151 0.849 35 H 0.135 0.865 36 H 0.132 0.868 37 H 0.134 0.866 38 H 0.137 0.863 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.102 0.898 42 H 0.103 0.897 43 H 0.088 0.912 44 H 0.100 0.900 45 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -3.889 3.539 16.204 17.035 hybrid contribution -0.034 -1.056 -0.626 1.229 sum -3.923 2.482 15.578 16.255 Atomic orbital electron populations 1.22054 0.96301 0.99226 1.02500 1.18864 0.94289 0.96626 0.88881 0.93155 1.21070 1.31159 1.12746 0.88965 0.91025 1.24917 0.95069 0.95035 0.99026 1.69844 1.36932 1.22947 1.23714 0.86525 0.79282 0.79767 0.81686 1.21348 1.20213 1.20226 1.22167 0.76472 0.85706 0.83934 1.90556 1.43679 1.20792 1.85624 1.48414 1.54448 1.25434 1.06357 1.20734 0.89572 0.86112 1.01980 1.20240 0.96781 0.97038 0.95876 1.21261 0.92557 0.96080 0.99487 1.21122 0.97984 0.99670 0.95257 1.21085 0.99161 0.96628 0.97329 1.20996 0.95120 0.98940 0.99970 1.20991 0.97955 0.99551 0.94700 1.20050 0.93889 0.87024 0.88684 1.22114 0.91301 1.03007 1.04710 1.22430 1.04324 1.00128 0.95080 1.23707 0.79771 0.91367 0.71866 1.90648 1.60540 1.45751 1.44046 1.84642 1.27388 1.39968 1.78870 0.95408 0.88570 0.95077 0.92849 0.90846 0.86266 0.84941 0.86539 0.86798 0.86614 0.86259 0.91179 0.91004 0.89838 0.89728 0.91160 0.90045 0.74422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 7.49 37.16 0.28 -2.85 16 2 C 0.03 0.81 1.78 -92.93 -0.17 0.65 16 3 H 0.05 1.22 7.39 -51.93 -0.38 0.83 16 4 C -0.50 -13.80 8.36 -34.44 -0.29 -14.09 16 5 H 0.07 2.10 6.81 -52.49 -0.36 1.75 16 6 C 0.06 1.63 5.29 -17.82 -0.09 1.54 16 7 N -0.90 -24.34 11.29 55.43 0.63 -23.71 16 8 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 9 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 C 0.53 11.46 6.28 -10.99 -0.07 11.39 16 13 O -0.53 -13.41 12.84 5.55 0.07 -13.34 16 14 N -0.61 -10.32 2.10 -161.45 -0.34 -10.66 16 15 C 0.14 1.96 4.71 -5.19 -0.02 1.93 16 16 C -0.10 -1.27 3.59 -104.62 -0.38 -1.65 16 17 C -0.08 -1.06 6.63 -39.59 -0.26 -1.33 16 18 C -0.12 -1.49 10.05 -39.58 -0.40 -1.88 16 19 C -0.12 -1.32 10.05 -39.58 -0.40 -1.72 16 20 C -0.13 -1.34 10.05 -39.58 -0.40 -1.74 16 21 C -0.11 -1.22 7.39 -39.58 -0.29 -1.51 16 22 C 0.19 2.98 0.88 -132.97 -0.12 2.86 16 23 C -0.15 -2.43 8.04 37.16 0.30 -2.13 16 24 C -0.16 -1.89 6.78 37.16 0.25 -1.64 16 25 C 0.49 8.59 5.61 36.01 0.20 8.79 16 26 O -0.52 -10.34 16.74 -18.75 -0.31 -10.65 16 27 O -0.50 -7.70 11.09 -39.25 -0.44 -8.14 16 28 H 0.03 0.51 3.76 -51.93 -0.20 0.31 16 29 H 0.10 2.35 5.95 -51.93 -0.31 2.05 16 30 H 0.03 0.69 7.82 -51.93 -0.41 0.28 16 31 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 32 H 0.07 0.84 6.59 -51.93 -0.34 0.49 16 33 H 0.12 1.89 4.24 -51.93 -0.22 1.67 16 34 H 0.13 2.18 5.63 -52.49 -0.30 1.88 16 35 H 0.12 1.26 8.06 -52.48 -0.42 0.83 16 36 H 0.11 0.98 8.06 -52.49 -0.42 0.55 16 37 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 38 H 0.12 1.02 7.95 -52.49 -0.42 0.60 16 39 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.07 1.06 7.74 -51.93 -0.40 0.65 16 41 H 0.08 1.63 6.30 -51.93 -0.33 1.30 16 42 H 0.08 1.00 4.80 -51.92 -0.25 0.75 16 43 H 0.07 0.74 8.13 -51.93 -0.42 0.32 16 44 H 0.08 0.79 6.67 -51.93 -0.35 0.45 16 45 H 0.40 4.59 9.11 45.56 0.41 5.01 16 LS Contribution 347.42 15.07 5.24 5.24 Total: -1.00 -32.57 347.42 -7.11 -39.68 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -5.08 Total: 8.43 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: -1.85 Total: -3.38 kcal Atomic # 7 Polarization: -34.66 SS G_CDS: 0.29 Total: -34.37 kcal Atomic # 8 Polarization: -31.45 SS G_CDS: -0.68 Total: -32.13 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.57 -7.11 -39.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592212693.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.532 kcal (2) G-P(sol) polarization free energy of solvation -32.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds