Wall clock time and date at job start Sat Apr 11 2020 00:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42905 * 109.46759 * 2 1 4 4 C 1.42903 * 113.99940 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.56841 * 330.16005 * 4 3 2 6 6 C 1.53097 * 109.52122 * 90.31116 * 4 3 2 7 7 O 1.42901 * 109.41300 * 177.51322 * 6 4 3 8 8 C 1.42901 * 114.09907 * 298.84937 * 7 6 4 9 9 C 1.53086 * 109.41984 * 61.15448 * 8 7 6 10 10 C 1.53172 * 109.16350 * 302.39320 * 9 8 7 11 11 H 1.08994 * 109.54774 * 297.02300 * 10 9 8 12 12 N 1.46506 * 109.54639 * 176.84600 * 10 9 8 13 13 C 1.34770 * 120.00022 * 84.99651 * 12 10 9 14 14 O 1.21552 * 120.00196 * 0.02562 * 13 12 10 15 15 C 1.47887 * 120.00265 * 180.02562 * 13 12 10 16 16 C 1.39923 * 120.02337 * 0.02562 * 15 13 12 17 17 C 1.38323 * 120.35871 * 180.02562 * 16 15 13 18 18 C 1.37754 * 120.41398 * 359.97438 * 17 16 15 19 19 C 1.40747 * 120.03627 * 359.97438 * 18 17 16 20 20 C 1.41437 * 120.17397 * 180.02562 * 19 18 17 21 21 H 1.08009 * 119.99479 * 154.70206 * 20 19 18 22 22 C 1.39936 * 120.00424 * 334.70056 * 20 19 18 23 23 N 1.30821 * 120.00077 * 334.14635 * 22 20 19 24 24 Si 1.86805 * 120.00089 * 154.13811 * 22 20 19 25 25 H 1.48496 * 109.46920 * 180.02562 * 24 22 20 26 26 H 1.48495 * 109.47260 * 300.00554 * 24 22 20 27 27 H 1.48504 * 109.46891 * 60.00185 * 24 22 20 28 28 C 1.38995 * 120.02732 * 180.30322 * 15 13 12 29 29 H 1.09005 * 109.47085 * 299.99946 * 1 2 3 30 30 H 1.08999 * 109.47127 * 59.99937 * 1 2 3 31 31 H 1.09000 * 109.47052 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47149 * 240.00286 * 2 1 3 33 33 H 1.08999 * 109.47020 * 119.99517 * 2 1 3 34 34 H 1.08998 * 109.47848 * 57.53479 * 6 4 3 35 35 H 1.08997 * 109.49390 * 297.50495 * 6 4 3 36 36 H 1.09001 * 109.47754 * 301.17075 * 8 7 6 37 37 H 1.09008 * 109.49072 * 181.15013 * 8 7 6 38 38 H 1.08996 * 109.52349 * 182.48617 * 9 8 7 39 39 H 1.09006 * 109.57164 * 62.32842 * 9 8 7 40 40 H 0.96999 * 119.99915 * 265.00288 * 12 10 9 41 41 H 1.08005 * 119.82057 * 359.97438 * 16 15 13 42 42 H 1.08005 * 119.79200 * 180.02562 * 17 16 15 43 43 H 1.07997 * 119.97830 * 179.97438 * 18 17 16 44 44 H 0.97007 * 119.99867 * 354.28035 * 23 22 20 45 45 H 1.07993 * 120.20059 * 359.96889 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4603 -0.0006 5 1 3.8654 0.6009 0.5101 6 6 3.9396 1.5087 -1.4437 7 8 5.3584 1.6798 -1.4417 8 6 5.7993 2.8894 -0.8217 9 6 5.3653 2.8964 0.6464 10 6 3.8427 2.7470 0.7212 11 1 3.3682 3.6032 0.2420 12 7 3.4254 2.6770 2.1239 13 6 3.2182 3.8106 2.8226 14 8 3.3771 4.8912 2.2890 15 6 2.7976 3.7401 4.2386 16 6 2.6151 2.4966 4.8537 17 6 2.2212 2.4225 6.1776 18 6 2.0046 3.5715 6.9060 19 6 2.1842 4.8313 6.3047 20 6 1.9632 6.0128 7.0501 21 1 2.4636 6.9285 6.7715 22 6 1.0962 5.9954 8.1484 23 7 0.1324 5.1127 8.2070 24 14 1.3152 7.2324 9.5309 25 1 0.2772 7.0043 10.5681 26 1 2.6619 7.0671 10.1343 27 1 1.1808 8.6087 8.9896 28 6 2.5776 4.9089 4.9580 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.4735 2.3444 -1.9656 35 1 3.6865 0.5773 -1.9501 36 1 5.3575 3.7432 -1.3354 37 1 6.8860 2.9528 -0.8798 38 1 5.6621 3.8374 1.1095 39 1 5.8390 2.0667 1.1712 40 1 3.2984 1.8148 2.5497 41 1 2.7818 1.5897 4.2914 42 1 2.0835 1.4578 6.6433 43 1 1.6969 3.5054 7.9391 44 1 -0.0336 4.5251 7.4532 45 1 2.7134 5.8708 4.4862 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353187023.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:01:29 Heat of formation + Delta-G solvation = -124.930328 kcal Electronic energy + Delta-G solvation = -26870.820108 eV Core-core repulsion = 23045.338430 eV Total energy + Delta-G solvation = -3825.481679 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.39065 -38.97111 -37.70323 -37.27503 -34.88254 -33.97404 -31.92537 -31.56186 -29.92188 -29.85360 -29.23716 -25.31791 -24.92901 -23.76150 -22.88550 -22.35508 -21.05605 -20.57971 -19.80738 -18.32137 -17.40321 -16.75015 -16.71280 -16.16422 -15.62241 -15.24490 -15.19026 -14.76214 -14.31423 -14.23179 -14.12149 -14.04751 -13.59437 -13.40603 -13.24147 -12.74882 -12.63088 -12.45893 -12.42940 -11.97146 -11.82971 -11.64989 -11.44957 -11.32838 -11.24968 -10.97240 -10.73033 -10.66584 -10.43398 -10.28269 -10.22410 -9.64944 -9.57518 -9.21194 -9.02930 -8.83905 -7.84973 -7.75045 -7.26322 -4.52973 2.02237 2.68201 3.13666 3.16070 3.19462 3.34091 3.41175 3.69426 3.74194 3.98277 4.35780 4.50680 4.56905 4.72244 4.76483 4.83225 4.95360 4.98020 5.07501 5.12353 5.31003 5.35970 5.39091 5.43695 5.48055 5.55714 5.66177 5.69721 5.83445 5.93663 5.96886 6.03865 6.10709 6.64698 6.67819 6.72694 6.76541 6.86288 7.03648 7.15183 7.49697 7.56020 7.63548 7.73728 7.87389 8.07995 8.15178 8.61946 8.72524 8.78239 9.97967 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.019054 B = 0.002942 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.193191 B = 9516.504337 C =10448.475898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.369 6.369 4 C 0.051 3.949 5 H 0.073 0.927 6 C 0.046 3.954 7 O -0.378 6.378 8 C 0.061 3.939 9 C -0.165 4.165 10 C 0.150 3.850 11 H 0.095 0.905 12 N -0.722 5.722 13 C 0.567 3.433 14 O -0.551 6.551 15 C -0.106 4.106 16 C -0.224 4.224 17 C -0.089 4.089 18 C -0.203 4.203 19 C 0.087 3.913 20 C -0.518 4.518 21 H 0.079 0.921 22 C 0.039 3.961 23 N -0.794 5.794 24 Si 1.066 2.934 25 H -0.274 1.274 26 H -0.274 1.274 27 H -0.275 1.275 28 C -0.155 4.155 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.047 0.953 33 H 0.050 0.950 34 H 0.063 0.937 35 H 0.097 0.903 36 H 0.057 0.943 37 H 0.100 0.900 38 H 0.089 0.911 39 H 0.075 0.925 40 H 0.399 0.601 41 H 0.091 0.909 42 H 0.095 0.905 43 H 0.109 0.891 44 H 0.299 0.701 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.023 -10.221 -14.099 18.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.288 6.288 4 C -0.008 4.008 5 H 0.091 0.909 6 C -0.032 4.032 7 O -0.296 6.296 8 C -0.016 4.016 9 C -0.204 4.204 10 C 0.044 3.956 11 H 0.113 0.887 12 N -0.374 5.374 13 C 0.358 3.642 14 O -0.429 6.429 15 C -0.109 4.109 16 C -0.244 4.244 17 C -0.108 4.108 18 C -0.223 4.223 19 C 0.084 3.916 20 C -0.546 4.546 21 H 0.097 0.903 22 C -0.183 4.183 23 N -0.417 5.417 24 Si 0.889 3.111 25 H -0.198 1.198 26 H -0.199 1.199 27 H -0.200 1.200 28 C -0.175 4.175 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.115 0.885 36 H 0.075 0.925 37 H 0.119 0.881 38 H 0.108 0.892 39 H 0.094 0.906 40 H 0.235 0.765 41 H 0.109 0.891 42 H 0.113 0.887 43 H 0.127 0.873 44 H 0.113 0.887 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 4.481 -9.006 -13.073 16.495 hybrid contribution 0.451 -1.102 -1.189 1.683 sum 4.932 -10.108 -14.262 18.163 Atomic orbital electron populations 1.21746 0.93454 1.02249 1.03498 1.22573 0.95947 0.83617 0.99999 1.88032 1.19320 1.26505 1.94916 1.23033 0.82472 0.98548 0.96716 0.90854 1.23010 0.81729 1.02952 0.95535 1.87942 1.20931 1.41575 1.79193 1.22655 1.00465 0.86899 0.91611 1.22672 0.95441 1.04440 0.97862 1.20952 0.94004 0.97678 0.82930 0.88672 1.45828 1.71036 1.09516 1.11043 1.18824 0.75336 0.83093 0.86940 1.90675 1.52352 1.28502 1.71399 1.19361 1.05113 0.95100 0.91299 1.20307 1.13613 0.94333 0.96178 1.20522 0.99208 0.97033 0.94011 1.21303 1.09468 0.92177 0.99314 1.17636 0.90302 0.93158 0.90539 1.20601 1.25087 0.97075 1.11858 0.90323 1.27052 0.91593 0.99249 1.00381 1.70471 1.22419 1.14727 1.34076 0.83627 0.77479 0.74993 0.75001 1.19822 1.19917 1.20013 1.21191 1.06802 0.95895 0.93609 0.91439 0.91872 0.91084 0.93454 0.93165 0.91858 0.88487 0.92482 0.88146 0.89246 0.90600 0.76526 0.89142 0.88668 0.87329 0.88747 0.87352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 10.28 37.16 0.38 -0.97 16 2 C 0.06 0.51 6.47 37.16 0.24 0.76 16 3 O -0.37 -4.52 9.92 -35.23 -0.35 -4.87 16 4 C 0.05 0.57 2.31 -26.59 -0.06 0.51 16 5 H 0.07 0.74 7.79 -51.93 -0.40 0.34 16 6 C 0.05 0.45 6.47 37.21 0.24 0.69 16 7 O -0.38 -4.08 10.77 -35.23 -0.38 -4.46 16 8 C 0.06 0.60 6.84 37.20 0.25 0.86 16 9 C -0.17 -1.96 5.71 -26.60 -0.15 -2.11 16 10 C 0.15 2.05 2.22 -67.75 -0.15 1.90 16 11 H 0.10 1.50 7.59 -51.93 -0.39 1.11 16 12 N -0.72 -11.53 4.96 -54.56 -0.27 -11.80 16 13 C 0.57 11.72 7.74 -12.31 -0.10 11.63 16 14 O -0.55 -12.81 16.00 5.32 0.09 -12.73 16 15 C -0.11 -2.39 5.87 -105.04 -0.62 -3.01 16 16 C -0.22 -4.64 9.55 -38.92 -0.37 -5.01 16 17 C -0.09 -1.94 10.01 -39.73 -0.40 -2.34 16 18 C -0.20 -5.01 7.96 -38.81 -0.31 -5.32 16 19 C 0.09 2.27 5.30 -106.87 -0.57 1.71 16 20 C -0.52 -13.73 8.98 -37.73 -0.34 -14.07 16 21 H 0.08 2.04 7.97 -52.48 -0.42 1.63 16 22 C 0.04 0.98 4.92 -17.35 -0.09 0.90 16 23 N -0.79 -20.74 12.31 55.55 0.68 -20.05 16 24 Si 1.07 21.30 30.00 -169.99 -5.10 16.20 16 25 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 26 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 27 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 28 C -0.15 -3.92 9.34 -38.44 -0.36 -4.28 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.05 0.36 7.96 -51.93 -0.41 -0.06 16 33 H 0.05 0.44 8.09 -51.93 -0.42 0.02 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.10 0.78 7.96 -51.93 -0.41 0.37 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.10 0.82 8.14 -51.92 -0.42 0.39 16 38 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.40 5.71 6.62 -40.82 -0.27 5.44 16 41 H 0.09 1.55 6.38 -52.48 -0.33 1.22 16 42 H 0.10 1.80 8.06 -52.48 -0.42 1.37 16 43 H 0.11 2.75 6.48 -52.49 -0.34 2.41 16 44 H 0.30 8.00 6.71 -40.82 -0.27 7.73 16 45 H 0.11 2.81 7.64 -52.49 -0.40 2.41 16 LS Contribution 369.61 15.07 5.57 5.57 Total: -1.00 -29.83 369.61 -8.83 -38.66 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: -6.68 Total: 11.66 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: -2.38 Total: -18.17 kcal Atomic # 7 Polarization: -32.27 SS G_CDS: 0.41 Total: -31.86 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: -0.64 Total: -22.06 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.10 Total: 16.20 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -29.83 -8.83 -38.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353187023.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.273 kcal (2) G-P(sol) polarization free energy of solvation -29.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds