Wall clock time and date at job start Sat Apr 11 2020 00:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42905 * 109.46759 * 2 1 4 4 C 1.42903 * 113.99940 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.56841 * 330.16005 * 4 3 2 6 6 C 1.53097 * 109.52122 * 90.31116 * 4 3 2 7 7 O 1.42901 * 109.41300 * 177.51322 * 6 4 3 8 8 C 1.42901 * 114.09907 * 298.84937 * 7 6 4 9 9 C 1.53086 * 109.41984 * 61.15448 * 8 7 6 10 10 C 1.53172 * 109.16350 * 302.39320 * 9 8 7 11 11 H 1.08994 * 109.54774 * 297.02300 * 10 9 8 12 12 N 1.46506 * 109.54639 * 176.84600 * 10 9 8 13 13 C 1.34770 * 120.00022 * 84.99651 * 12 10 9 14 14 O 1.21552 * 120.00196 * 0.02562 * 13 12 10 15 15 C 1.47887 * 120.00265 * 180.02562 * 13 12 10 16 16 C 1.39923 * 120.02337 * 0.02562 * 15 13 12 17 17 C 1.38323 * 120.35871 * 180.02562 * 16 15 13 18 18 C 1.37754 * 120.41398 * 359.97438 * 17 16 15 19 19 C 1.40747 * 120.03627 * 359.97438 * 18 17 16 20 20 C 1.41437 * 120.17397 * 180.02562 * 19 18 17 21 21 H 1.08009 * 119.99479 * 154.70206 * 20 19 18 22 22 C 1.39936 * 120.00424 * 334.70056 * 20 19 18 23 23 N 1.30821 * 120.00077 * 334.14635 * 22 20 19 24 24 Si 1.86805 * 120.00089 * 154.13811 * 22 20 19 25 25 H 1.48496 * 109.46920 * 180.02562 * 24 22 20 26 26 H 1.48495 * 109.47260 * 300.00554 * 24 22 20 27 27 H 1.48504 * 109.46891 * 60.00185 * 24 22 20 28 28 C 1.38995 * 120.02732 * 180.30322 * 15 13 12 29 29 H 1.09005 * 109.47085 * 299.99946 * 1 2 3 30 30 H 1.08999 * 109.47127 * 59.99937 * 1 2 3 31 31 H 1.09000 * 109.47052 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47149 * 240.00286 * 2 1 3 33 33 H 1.08999 * 109.47020 * 119.99517 * 2 1 3 34 34 H 1.08998 * 109.47848 * 57.53479 * 6 4 3 35 35 H 1.08997 * 109.49390 * 297.50495 * 6 4 3 36 36 H 1.09001 * 109.47754 * 301.17075 * 8 7 6 37 37 H 1.09008 * 109.49072 * 181.15013 * 8 7 6 38 38 H 1.08996 * 109.52349 * 182.48617 * 9 8 7 39 39 H 1.09006 * 109.57164 * 62.32842 * 9 8 7 40 40 H 0.96999 * 119.99915 * 265.00288 * 12 10 9 41 41 H 1.08005 * 119.82057 * 359.97438 * 16 15 13 42 42 H 1.08005 * 119.79200 * 180.02562 * 17 16 15 43 43 H 1.07997 * 119.97830 * 179.97438 * 18 17 16 44 44 H 0.97007 * 119.99867 * 354.28035 * 23 22 20 45 45 H 1.07993 * 120.20059 * 359.96889 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4603 -0.0006 5 1 3.8654 0.6009 0.5101 6 6 3.9396 1.5087 -1.4437 7 8 5.3584 1.6798 -1.4417 8 6 5.7993 2.8894 -0.8217 9 6 5.3653 2.8964 0.6464 10 6 3.8427 2.7470 0.7212 11 1 3.3682 3.6032 0.2420 12 7 3.4254 2.6770 2.1239 13 6 3.2182 3.8106 2.8226 14 8 3.3771 4.8912 2.2890 15 6 2.7976 3.7401 4.2386 16 6 2.6151 2.4966 4.8537 17 6 2.2212 2.4225 6.1776 18 6 2.0046 3.5715 6.9060 19 6 2.1842 4.8313 6.3047 20 6 1.9632 6.0128 7.0501 21 1 2.4636 6.9285 6.7715 22 6 1.0962 5.9954 8.1484 23 7 0.1324 5.1127 8.2070 24 14 1.3152 7.2324 9.5309 25 1 0.2772 7.0043 10.5681 26 1 2.6619 7.0671 10.1343 27 1 1.1808 8.6087 8.9896 28 6 2.5776 4.9089 4.9580 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.4735 2.3444 -1.9656 35 1 3.6865 0.5773 -1.9501 36 1 5.3575 3.7432 -1.3354 37 1 6.8860 2.9528 -0.8798 38 1 5.6621 3.8374 1.1095 39 1 5.8390 2.0667 1.1712 40 1 3.2984 1.8148 2.5497 41 1 2.7818 1.5897 4.2914 42 1 2.0835 1.4578 6.6433 43 1 1.6969 3.5054 7.9391 44 1 -0.0336 4.5251 7.4532 45 1 2.7134 5.8708 4.4862 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353187023.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:01:28 Heat of formation + Delta-G solvation = -143.942679 kcal Electronic energy + Delta-G solvation = -26871.644546 eV Core-core repulsion = 23045.338430 eV Total energy + Delta-G solvation = -3826.306116 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.56231 -40.38564 -39.05878 -38.52544 -36.19658 -35.83499 -33.04025 -32.49755 -31.78979 -31.21766 -30.41862 -27.13281 -26.19298 -24.60624 -24.02589 -23.54150 -22.84718 -21.68138 -21.45664 -20.03682 -18.53010 -17.89872 -17.74624 -17.43810 -16.80229 -16.45509 -16.36685 -16.12723 -15.93817 -15.63267 -15.55954 -15.31849 -15.05307 -14.53083 -14.35902 -14.22241 -14.14931 -13.84103 -13.43894 -13.21517 -13.10931 -12.78765 -12.62791 -12.58442 -12.40366 -12.24957 -12.15825 -12.07639 -11.94328 -11.61261 -11.41443 -11.11727 -11.03552 -10.90743 -10.35715 -10.21870 -9.73761 -9.63090 -9.22810 -6.54303 0.18989 0.82222 1.49962 1.57366 1.79760 1.98784 2.03556 2.31512 2.37098 2.66545 2.92140 3.43199 3.47066 3.70971 3.78272 3.85293 3.89490 4.04813 4.16101 4.22229 4.24005 4.28276 4.37807 4.47449 4.48406 4.57084 4.65871 4.69492 4.77316 4.80774 4.89487 4.91208 4.98804 5.01540 5.02355 5.24013 5.25823 5.35078 5.61717 5.63879 5.70073 5.78594 5.93862 6.11090 6.20203 6.25002 6.48634 6.67815 6.81708 7.15594 7.98847 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.019054 B = 0.002942 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.193191 B = 9516.504337 C =10448.475898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.048 3.952 3 O -0.395 6.395 4 C 0.059 3.941 5 H 0.092 0.908 6 C 0.047 3.953 7 O -0.381 6.381 8 C 0.064 3.936 9 C -0.159 4.159 10 C 0.144 3.856 11 H 0.068 0.932 12 N -0.700 5.700 13 C 0.566 3.434 14 O -0.585 6.585 15 C -0.111 4.111 16 C -0.198 4.198 17 C -0.087 4.087 18 C -0.213 4.213 19 C 0.063 3.937 20 C -0.561 4.561 21 H 0.066 0.934 22 C 0.008 3.992 23 N -0.812 5.812 24 Si 1.117 2.883 25 H -0.267 1.267 26 H -0.262 1.262 27 H -0.262 1.262 28 C -0.187 4.187 29 H 0.046 0.954 30 H 0.058 0.942 31 H 0.093 0.907 32 H 0.070 0.930 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.122 0.878 36 H 0.056 0.944 37 H 0.122 0.878 38 H 0.068 0.932 39 H 0.088 0.912 40 H 0.411 0.589 41 H 0.139 0.861 42 H 0.135 0.865 43 H 0.098 0.902 44 H 0.284 0.716 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.922 -13.241 -15.025 20.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.028 4.028 3 O -0.315 6.315 4 C 0.000 4.000 5 H 0.110 0.890 6 C -0.030 4.030 7 O -0.300 6.300 8 C -0.013 4.013 9 C -0.198 4.198 10 C 0.039 3.961 11 H 0.086 0.914 12 N -0.351 5.351 13 C 0.355 3.645 14 O -0.467 6.467 15 C -0.114 4.114 16 C -0.218 4.218 17 C -0.105 4.105 18 C -0.233 4.233 19 C 0.061 3.939 20 C -0.589 4.589 21 H 0.085 0.915 22 C -0.209 4.209 23 N -0.435 5.435 24 Si 0.933 3.067 25 H -0.191 1.191 26 H -0.187 1.187 27 H -0.187 1.187 28 C -0.208 4.208 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.112 0.888 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.139 0.861 36 H 0.075 0.925 37 H 0.140 0.860 38 H 0.086 0.914 39 H 0.106 0.894 40 H 0.248 0.752 41 H 0.156 0.844 42 H 0.153 0.847 43 H 0.116 0.884 44 H 0.096 0.904 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.390 -12.085 -14.039 19.292 hybrid contribution 0.198 -0.337 -1.092 1.160 sum 5.588 -12.422 -15.131 20.359 Atomic orbital electron populations 1.21777 0.93546 1.03366 1.02273 1.22795 0.95938 0.82466 1.01569 1.88016 1.19761 1.28565 1.95119 1.22983 0.82398 0.97244 0.97341 0.89010 1.23084 0.81229 1.04071 0.94657 1.87948 1.21373 1.41638 1.79043 1.22699 1.01761 0.86854 0.89980 1.22604 0.93930 1.03786 0.99480 1.21186 0.95165 0.98573 0.81203 0.91373 1.45653 1.69154 1.08457 1.11862 1.18593 0.75565 0.83850 0.86461 1.90660 1.54041 1.30113 1.71847 1.19666 1.04203 0.95068 0.92486 1.20812 1.09951 0.95111 0.95913 1.20955 0.97626 0.97677 0.94281 1.21359 1.09907 0.92742 0.99264 1.17903 0.90926 0.94090 0.91001 1.20771 1.26999 0.97143 1.14025 0.91541 1.28420 0.90270 1.00134 1.02044 1.70588 1.23450 1.15873 1.33601 0.83013 0.78028 0.73268 0.72356 1.19096 1.18654 1.18683 1.21137 1.09449 0.96273 0.93940 0.93505 0.92251 0.88816 0.91155 0.92219 0.92311 0.86061 0.92524 0.85978 0.91351 0.89372 0.75175 0.84358 0.84683 0.88396 0.90387 0.89700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 10.28 71.98 0.74 -1.63 16 2 C 0.05 0.74 6.47 71.98 0.47 1.21 16 3 O -0.39 -8.77 9.92 -148.98 -1.48 -10.25 16 4 C 0.06 1.15 2.31 30.69 0.07 1.22 16 5 H 0.09 1.47 7.79 -2.39 -0.02 1.45 16 6 C 0.05 0.79 6.47 72.01 0.47 1.25 16 7 O -0.38 -7.07 10.77 -148.98 -1.60 -8.68 16 8 C 0.06 1.14 6.84 72.01 0.49 1.63 16 9 C -0.16 -3.53 5.71 30.68 0.18 -3.36 16 10 C 0.14 3.73 2.22 45.11 0.10 3.83 16 11 H 0.07 2.18 7.59 -2.39 -0.02 2.16 16 12 N -0.70 -21.19 4.96 -444.82 -2.21 -23.40 16 13 C 0.57 23.41 7.74 86.80 0.67 24.08 16 14 O -0.59 -28.21 16.00 -3.88 -0.06 -28.28 16 15 C -0.11 -5.03 5.87 -20.13 -0.12 -5.15 16 16 C -0.20 -7.68 9.55 22.70 0.22 -7.47 16 17 C -0.09 -3.61 10.01 22.18 0.22 -3.39 16 18 C -0.21 -10.64 7.96 22.77 0.18 -10.46 16 19 C 0.06 3.48 5.30 -21.32 -0.11 3.36 16 20 C -0.56 -31.39 8.98 23.47 0.21 -31.18 16 21 H 0.07 3.72 7.97 -2.91 -0.02 3.69 16 22 C 0.01 0.40 4.92 85.25 0.42 0.82 16 23 N -0.81 -43.74 12.31 21.82 0.27 -43.47 16 24 Si 1.12 43.66 30.00 68.60 2.06 45.71 16 25 H -0.27 -10.04 7.11 99.48 0.71 -9.34 16 26 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 27 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 28 C -0.19 -9.99 9.34 23.01 0.21 -9.77 16 29 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 30 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.07 0.77 7.96 -2.39 -0.02 0.75 16 33 H 0.06 0.81 8.09 -2.39 -0.02 0.79 16 34 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.12 1.47 7.96 -2.39 -0.02 1.45 16 36 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.12 1.66 8.14 -2.38 -0.02 1.64 16 38 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 40 H 0.41 10.34 6.62 -92.71 -0.61 9.72 16 41 H 0.14 4.03 6.38 -2.91 -0.02 4.01 16 42 H 0.14 4.52 8.06 -2.91 -0.02 4.50 16 43 H 0.10 5.06 6.48 -2.91 -0.02 5.04 16 44 H 0.28 15.83 6.71 -92.70 -0.62 15.21 16 45 H 0.08 4.78 7.64 -2.91 -0.02 4.76 16 Total: -1.00 -68.94 369.61 1.92 -67.02 By element: Atomic # 1 Polarization: 35.81 SS G_CDS: 0.53 Total: 36.34 kcal Atomic # 6 Polarization: -39.41 SS G_CDS: 4.42 Total: -35.00 kcal Atomic # 7 Polarization: -64.93 SS G_CDS: -1.94 Total: -66.87 kcal Atomic # 8 Polarization: -44.06 SS G_CDS: -3.14 Total: -47.20 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.06 Total: 45.71 kcal Total: -68.94 1.92 -67.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353187023.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.924 kcal (2) G-P(sol) polarization free energy of solvation -68.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds