Wall clock time and date at job start Sat Apr 11 2020 00:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42902 * 109.47133 * 2 1 4 4 C 1.42904 * 114.00060 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.56895 * 29.84400 * 4 3 2 6 6 C 1.53088 * 109.52190 * 269.68524 * 4 3 2 7 7 O 1.42898 * 109.41433 * 182.48356 * 6 4 3 8 8 C 1.42906 * 114.09747 * 61.15937 * 7 6 4 9 9 C 1.53099 * 109.48401 * 298.88888 * 8 7 6 10 10 C 1.53172 * 109.51986 * 149.99832 * 4 3 2 11 11 H 1.08995 * 109.54695 * 56.93315 * 10 4 3 12 12 N 1.46503 * 109.54681 * 296.75228 * 10 4 3 13 13 C 1.34775 * 120.00217 * 155.18006 * 12 10 4 14 14 O 1.21551 * 119.99648 * 359.97438 * 13 12 10 15 15 C 1.47874 * 120.00360 * 179.97438 * 13 12 10 16 16 C 1.39925 * 120.02477 * 0.02562 * 15 13 12 17 17 C 1.38326 * 120.36008 * 179.97438 * 16 15 13 18 18 C 1.37757 * 120.41447 * 359.97438 * 17 16 15 19 19 C 1.40747 * 120.03309 * 0.02562 * 18 17 16 20 20 C 1.41443 * 120.17245 * 180.02562 * 19 18 17 21 21 H 1.08004 * 119.99942 * 334.92135 * 20 19 18 22 22 C 1.39933 * 120.00119 * 154.92495 * 20 19 18 23 23 N 1.30831 * 120.00039 * 342.59253 * 22 20 19 24 24 Si 1.86801 * 120.00120 * 162.58503 * 22 20 19 25 25 H 1.48505 * 109.46837 * 60.00300 * 24 22 20 26 26 H 1.48502 * 109.46873 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.47390 * 300.00314 * 24 22 20 28 28 C 1.38997 * 120.02858 * 179.97438 * 15 13 12 29 29 H 1.09003 * 109.47185 * 59.99842 * 1 2 3 30 30 H 1.08992 * 109.47304 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46661 * 299.99838 * 1 2 3 32 32 H 1.08995 * 109.46849 * 239.99835 * 2 1 3 33 33 H 1.09000 * 109.47376 * 119.99668 * 2 1 3 34 34 H 1.09005 * 109.47952 * 302.46790 * 6 4 3 35 35 H 1.09001 * 109.48464 * 62.49045 * 6 4 3 36 36 H 1.09003 * 109.47932 * 58.82038 * 8 7 6 37 37 H 1.08999 * 109.48231 * 178.84752 * 8 7 6 38 38 H 1.08997 * 109.45315 * 297.61079 * 9 8 7 39 39 H 1.09006 * 109.59971 * 177.42123 * 9 8 7 40 40 H 0.96999 * 119.99963 * 335.17823 * 12 10 4 41 41 H 1.08003 * 119.82024 * 359.95154 * 16 15 13 42 42 H 1.08004 * 119.79398 * 179.71713 * 17 16 15 43 43 H 1.07992 * 119.98148 * 180.02562 * 18 17 16 44 44 H 0.96997 * 120.00281 * 180.02562 * 23 22 20 45 45 H 1.07993 * 120.20345 * 359.97438 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4310 1.4601 -0.0006 5 1 3.8650 0.6010 -0.5120 6 6 3.9409 1.5082 1.4421 7 8 5.3596 1.6792 1.4389 8 6 5.8002 2.8890 0.8189 9 6 5.3646 2.8986 -0.6488 10 6 3.8421 2.7470 -0.7224 11 1 3.3669 3.6023 -0.2422 12 7 3.4238 2.6775 -2.1248 13 6 3.2108 3.8113 -2.8215 14 8 3.3653 4.8916 -2.2862 15 6 2.7891 3.7412 -4.2371 16 6 2.6105 2.4979 -4.8537 17 6 2.2156 2.4242 -6.1773 18 6 1.9931 3.5734 -6.9037 19 6 2.1677 4.8330 -6.3005 20 6 1.9395 6.0147 -7.0434 21 1 2.0313 6.0023 -8.1195 22 6 1.5951 7.2000 -6.3842 23 7 1.1535 7.1595 -5.1534 24 14 1.7658 8.8403 -7.2617 25 1 0.9107 8.8435 -8.4758 26 1 1.3386 9.9345 -6.3531 27 1 3.1832 9.0468 -7.6539 28 6 2.5687 4.9103 -4.9560 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.4752 2.3439 1.9646 35 1 3.6880 0.5766 1.9483 36 1 5.3587 3.7427 1.3332 37 1 6.8868 2.9521 0.8762 38 1 5.8391 2.0695 -1.1737 39 1 5.6597 3.8404 -1.1116 40 1 3.3001 1.8154 -2.5518 41 1 2.7822 1.5908 -4.2931 42 1 2.0849 1.4597 -6.6455 43 1 1.6847 3.5077 -7.9366 44 1 0.9144 7.9811 -4.6965 45 1 2.7041 5.8720 -4.4839 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353187024.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:01:31 Heat of formation + Delta-G solvation = -118.162768 kcal Electronic energy + Delta-G solvation = -27089.362861 eV Core-core repulsion = 23264.174645 eV Total energy + Delta-G solvation = -3825.188215 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.27583 -38.79534 -37.62452 -36.99255 -34.73075 -33.73347 -31.85539 -31.51205 -30.01192 -29.50066 -29.34748 -25.47195 -24.83071 -23.67960 -22.80792 -22.20620 -20.99638 -20.48895 -19.49650 -17.85989 -17.24992 -16.66444 -16.59786 -15.88735 -15.56231 -15.23683 -15.13183 -14.86695 -14.55689 -14.12086 -14.04080 -13.74127 -13.36499 -13.13596 -13.10462 -12.67916 -12.57366 -12.48135 -12.36449 -11.78617 -11.63781 -11.57504 -11.36632 -11.19527 -11.14226 -11.07326 -10.74284 -10.63905 -10.49248 -10.20140 -10.02491 -9.69951 -9.54113 -9.20914 -8.95541 -8.67598 -7.62910 -7.51724 -6.79274 -4.41472 2.21392 2.82349 3.07685 3.09395 3.16630 3.24350 3.55765 3.78994 3.87061 3.92495 4.44794 4.60815 4.66511 4.81804 4.85307 4.89879 5.03523 5.05894 5.16710 5.19374 5.39734 5.43561 5.51221 5.56366 5.61291 5.69701 5.75767 5.76412 5.94854 6.00397 6.07420 6.14686 6.27134 6.71550 6.79946 6.84902 6.98900 7.01808 7.11802 7.21384 7.38202 7.69898 7.75706 7.92387 8.09241 8.19197 8.50480 8.80415 8.83522 8.95708 10.15496 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.015409 B = 0.003335 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.699134 B = 8393.351564 C = 9151.994325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.368 6.368 4 C 0.052 3.948 5 H 0.073 0.927 6 C 0.045 3.955 7 O -0.378 6.378 8 C 0.061 3.939 9 C -0.165 4.165 10 C 0.151 3.849 11 H 0.095 0.905 12 N -0.725 5.725 13 C 0.568 3.432 14 O -0.546 6.546 15 C -0.127 4.127 16 C -0.217 4.217 17 C -0.098 4.098 18 C -0.212 4.212 19 C 0.099 3.901 20 C -0.462 4.462 21 H 0.081 0.919 22 C 0.074 3.926 23 N -0.784 5.784 24 Si 0.911 3.089 25 H -0.265 1.265 26 H -0.277 1.277 27 H -0.263 1.263 28 C -0.091 4.091 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.050 0.950 33 H 0.046 0.954 34 H 0.063 0.937 35 H 0.096 0.904 36 H 0.057 0.943 37 H 0.100 0.900 38 H 0.074 0.926 39 H 0.089 0.911 40 H 0.398 0.602 41 H 0.088 0.912 42 H 0.092 0.908 43 H 0.095 0.905 44 H 0.285 0.715 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.912 -11.687 11.105 16.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.287 6.287 4 C -0.007 4.007 5 H 0.091 0.909 6 C -0.032 4.032 7 O -0.297 6.297 8 C -0.017 4.017 9 C -0.204 4.204 10 C 0.045 3.955 11 H 0.113 0.887 12 N -0.377 5.377 13 C 0.359 3.641 14 O -0.424 6.424 15 C -0.130 4.130 16 C -0.237 4.237 17 C -0.116 4.116 18 C -0.232 4.232 19 C 0.097 3.903 20 C -0.490 4.490 21 H 0.099 0.901 22 C -0.145 4.145 23 N -0.408 5.408 24 Si 0.735 3.265 25 H -0.190 1.190 26 H -0.202 1.202 27 H -0.187 1.187 28 C -0.111 4.111 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.081 0.919 35 H 0.114 0.886 36 H 0.075 0.925 37 H 0.118 0.882 38 H 0.093 0.907 39 H 0.108 0.892 40 H 0.233 0.767 41 H 0.106 0.894 42 H 0.110 0.890 43 H 0.114 0.886 44 H 0.096 0.904 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 3.907 -10.712 11.767 16.385 hybrid contribution -0.185 0.168 -0.694 0.738 sum 3.722 -10.544 11.073 15.736 Atomic orbital electron populations 1.21743 0.93501 1.02166 1.03535 1.22562 0.95924 0.83706 0.99926 1.88042 1.19348 1.26388 1.94900 1.23030 0.82430 0.98630 0.96649 0.90923 1.23008 0.81726 1.02883 0.95622 1.87934 1.20941 1.41591 1.79224 1.22657 1.00388 0.86866 0.91743 1.22675 0.95569 1.04405 0.97736 1.20917 0.93876 0.97554 0.83168 0.88724 1.45836 1.71413 1.09522 1.10972 1.18826 0.75278 0.83003 0.87041 1.90686 1.52072 1.28457 1.71210 1.19459 1.06796 0.95221 0.91554 1.20321 1.13154 0.94398 0.95811 1.20426 1.00329 0.96767 0.94091 1.21097 1.10090 0.92492 0.99499 1.17591 0.88675 0.92341 0.91705 1.19559 1.41538 0.92893 0.95051 0.90121 1.25958 0.92351 1.01435 0.94805 1.69783 1.28570 1.30815 1.11615 0.86327 0.79970 0.80305 0.79925 1.18972 1.20215 1.18722 1.21633 0.98086 0.96747 0.94684 0.91390 0.91155 0.91896 0.93195 0.93535 0.91874 0.88566 0.92511 0.88209 0.90682 0.89210 0.76706 0.89410 0.88960 0.88631 0.90376 0.84871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 10.28 37.16 0.38 -1.04 16 2 C 0.06 0.55 6.47 37.16 0.24 0.79 16 3 O -0.37 -4.79 9.92 -35.23 -0.35 -5.14 16 4 C 0.05 0.61 2.31 -26.60 -0.06 0.55 16 5 H 0.07 0.78 7.79 -51.93 -0.40 0.38 16 6 C 0.05 0.48 6.47 37.20 0.24 0.72 16 7 O -0.38 -4.31 10.77 -35.23 -0.38 -4.69 16 8 C 0.06 0.64 6.84 37.21 0.25 0.90 16 9 C -0.16 -2.09 5.72 -26.59 -0.15 -2.24 16 10 C 0.15 2.19 2.22 -67.75 -0.15 2.04 16 11 H 0.09 1.61 7.58 -51.93 -0.39 1.21 16 12 N -0.73 -12.31 4.96 -54.56 -0.27 -12.58 16 13 C 0.57 12.51 7.74 -12.32 -0.10 12.41 16 14 O -0.55 -13.66 16.00 5.32 0.09 -13.58 16 15 C -0.13 -3.02 5.87 -105.04 -0.62 -3.64 16 16 C -0.22 -4.59 9.55 -38.92 -0.37 -4.96 16 17 C -0.10 -2.09 10.01 -39.72 -0.40 -2.49 16 18 C -0.21 -5.05 9.78 -38.81 -0.38 -5.43 16 19 C 0.10 2.64 5.57 -106.87 -0.59 2.04 16 20 C -0.46 -12.17 9.05 -37.73 -0.34 -12.51 16 21 H 0.08 2.01 7.90 -52.48 -0.41 1.60 16 22 C 0.07 1.87 5.14 -17.34 -0.09 1.78 16 23 N -0.78 -20.91 10.97 55.55 0.61 -20.30 16 24 Si 0.91 18.84 29.59 -169.99 -5.03 13.81 16 25 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 26 H -0.28 -5.63 7.11 56.52 0.40 -5.22 16 27 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 28 C -0.09 -2.45 8.23 -38.44 -0.32 -2.77 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.46 8.09 -51.93 -0.42 0.04 16 33 H 0.05 0.37 7.96 -51.93 -0.41 -0.04 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.10 0.83 7.96 -51.93 -0.41 0.42 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 40 H 0.40 6.02 6.62 -40.82 -0.27 5.75 16 41 H 0.09 1.55 6.38 -52.48 -0.33 1.21 16 42 H 0.09 1.67 8.06 -52.48 -0.42 1.25 16 43 H 0.10 2.12 8.06 -52.49 -0.42 1.69 16 44 H 0.29 7.02 8.30 -40.82 -0.34 6.68 16 45 H 0.13 3.86 5.76 -52.49 -0.30 3.56 16 LS Contribution 370.36 15.07 5.58 5.58 Total: -1.00 -30.45 370.36 -8.93 -39.38 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: -6.73 Total: 11.35 kcal Atomic # 6 Polarization: -11.40 SS G_CDS: -2.45 Total: -13.84 kcal Atomic # 7 Polarization: -33.21 SS G_CDS: 0.34 Total: -32.87 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: -0.64 Total: -23.40 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.81 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.45 -8.93 -39.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353187024.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.781 kcal (2) G-P(sol) polarization free energy of solvation -30.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds