Wall clock time and date at job start Sat Apr 11 2020 00:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42902 * 109.47133 * 2 1 4 4 C 1.42904 * 114.00060 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.56895 * 29.84400 * 4 3 2 6 6 C 1.53088 * 109.52190 * 269.68524 * 4 3 2 7 7 O 1.42898 * 109.41433 * 182.48356 * 6 4 3 8 8 C 1.42906 * 114.09747 * 61.15937 * 7 6 4 9 9 C 1.53099 * 109.48401 * 298.88888 * 8 7 6 10 10 C 1.53172 * 109.51986 * 149.99832 * 4 3 2 11 11 H 1.08995 * 109.54695 * 56.93315 * 10 4 3 12 12 N 1.46503 * 109.54681 * 296.75228 * 10 4 3 13 13 C 1.34775 * 120.00217 * 155.18006 * 12 10 4 14 14 O 1.21551 * 119.99648 * 359.97438 * 13 12 10 15 15 C 1.47874 * 120.00360 * 179.97438 * 13 12 10 16 16 C 1.39925 * 120.02477 * 0.02562 * 15 13 12 17 17 C 1.38326 * 120.36008 * 179.97438 * 16 15 13 18 18 C 1.37757 * 120.41447 * 359.97438 * 17 16 15 19 19 C 1.40747 * 120.03309 * 0.02562 * 18 17 16 20 20 C 1.41443 * 120.17245 * 180.02562 * 19 18 17 21 21 H 1.08004 * 119.99942 * 334.92135 * 20 19 18 22 22 C 1.39933 * 120.00119 * 154.92495 * 20 19 18 23 23 N 1.30831 * 120.00039 * 342.59253 * 22 20 19 24 24 Si 1.86801 * 120.00120 * 162.58503 * 22 20 19 25 25 H 1.48505 * 109.46837 * 60.00300 * 24 22 20 26 26 H 1.48502 * 109.46873 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.47390 * 300.00314 * 24 22 20 28 28 C 1.38997 * 120.02858 * 179.97438 * 15 13 12 29 29 H 1.09003 * 109.47185 * 59.99842 * 1 2 3 30 30 H 1.08992 * 109.47304 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46661 * 299.99838 * 1 2 3 32 32 H 1.08995 * 109.46849 * 239.99835 * 2 1 3 33 33 H 1.09000 * 109.47376 * 119.99668 * 2 1 3 34 34 H 1.09005 * 109.47952 * 302.46790 * 6 4 3 35 35 H 1.09001 * 109.48464 * 62.49045 * 6 4 3 36 36 H 1.09003 * 109.47932 * 58.82038 * 8 7 6 37 37 H 1.08999 * 109.48231 * 178.84752 * 8 7 6 38 38 H 1.08997 * 109.45315 * 297.61079 * 9 8 7 39 39 H 1.09006 * 109.59971 * 177.42123 * 9 8 7 40 40 H 0.96999 * 119.99963 * 335.17823 * 12 10 4 41 41 H 1.08003 * 119.82024 * 359.95154 * 16 15 13 42 42 H 1.08004 * 119.79398 * 179.71713 * 17 16 15 43 43 H 1.07992 * 119.98148 * 180.02562 * 18 17 16 44 44 H 0.96997 * 120.00281 * 180.02562 * 23 22 20 45 45 H 1.07993 * 120.20345 * 359.97438 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4310 1.4601 -0.0006 5 1 3.8650 0.6010 -0.5120 6 6 3.9409 1.5082 1.4421 7 8 5.3596 1.6792 1.4389 8 6 5.8002 2.8890 0.8189 9 6 5.3646 2.8986 -0.6488 10 6 3.8421 2.7470 -0.7224 11 1 3.3669 3.6023 -0.2422 12 7 3.4238 2.6775 -2.1248 13 6 3.2108 3.8113 -2.8215 14 8 3.3653 4.8916 -2.2862 15 6 2.7891 3.7412 -4.2371 16 6 2.6105 2.4979 -4.8537 17 6 2.2156 2.4242 -6.1773 18 6 1.9931 3.5734 -6.9037 19 6 2.1677 4.8330 -6.3005 20 6 1.9395 6.0147 -7.0434 21 1 2.0313 6.0023 -8.1195 22 6 1.5951 7.2000 -6.3842 23 7 1.1535 7.1595 -5.1534 24 14 1.7658 8.8403 -7.2617 25 1 0.9107 8.8435 -8.4758 26 1 1.3386 9.9345 -6.3531 27 1 3.1832 9.0468 -7.6539 28 6 2.5687 4.9103 -4.9560 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.4752 2.3439 1.9646 35 1 3.6880 0.5766 1.9483 36 1 5.3587 3.7427 1.3332 37 1 6.8868 2.9521 0.8762 38 1 5.8391 2.0695 -1.1737 39 1 5.6597 3.8404 -1.1116 40 1 3.3001 1.8154 -2.5518 41 1 2.7822 1.5908 -4.2931 42 1 2.0849 1.4597 -6.6455 43 1 1.6847 3.5077 -7.9366 44 1 0.9144 7.9811 -4.6965 45 1 2.7041 5.8720 -4.4839 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353187024.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:01:31 Heat of formation + Delta-G solvation = -138.111863 kcal Electronic energy + Delta-G solvation = -27090.227918 eV Core-core repulsion = 23264.174645 eV Total energy + Delta-G solvation = -3826.053273 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.48700 -40.28165 -38.78140 -38.50584 -36.13338 -35.58617 -33.10449 -32.49651 -31.58554 -31.25792 -30.43609 -27.28615 -26.12781 -24.58482 -23.90866 -23.49962 -22.81324 -21.64500 -21.15886 -19.56101 -18.43136 -17.85152 -17.63416 -17.36347 -16.97301 -16.53780 -16.36291 -16.13323 -16.02374 -15.53294 -15.27638 -15.21107 -14.88244 -14.46672 -14.29537 -14.19843 -14.16781 -13.50056 -13.41164 -13.19712 -12.97597 -12.81982 -12.63258 -12.56620 -12.51962 -12.24299 -12.19925 -12.07356 -11.90744 -11.59832 -11.51775 -11.07957 -11.07116 -10.87948 -10.31179 -10.15366 -9.48716 -9.39884 -8.67183 -6.39740 0.36452 1.00089 1.35443 1.47129 1.49950 2.07247 2.13289 2.18866 2.39652 2.77597 2.93659 3.47360 3.67560 3.73831 3.83498 3.91145 3.96793 4.06729 4.18458 4.26683 4.30381 4.39731 4.49240 4.51259 4.56644 4.59371 4.67131 4.78921 4.81971 4.89440 4.93305 5.03342 5.04683 5.07455 5.17595 5.27719 5.29676 5.42901 5.50835 5.84650 5.90741 5.95322 6.03763 6.27126 6.27386 6.48048 6.65352 6.86677 6.93381 7.28127 8.29527 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.015409 B = 0.003335 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.699134 B = 8393.351564 C = 9151.994325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.048 3.952 3 O -0.396 6.396 4 C 0.060 3.940 5 H 0.093 0.907 6 C 0.047 3.953 7 O -0.380 6.380 8 C 0.064 3.936 9 C -0.159 4.159 10 C 0.144 3.856 11 H 0.063 0.937 12 N -0.702 5.702 13 C 0.564 3.436 14 O -0.588 6.588 15 C -0.139 4.139 16 C -0.197 4.197 17 C -0.095 4.095 18 C -0.217 4.217 19 C 0.068 3.932 20 C -0.499 4.499 21 H 0.085 0.915 22 C 0.030 3.970 23 N -0.827 5.827 24 Si 0.983 3.017 25 H -0.252 1.252 26 H -0.273 1.273 27 H -0.260 1.260 28 C -0.130 4.130 29 H 0.045 0.955 30 H 0.095 0.905 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.057 0.943 35 H 0.123 0.877 36 H 0.054 0.946 37 H 0.123 0.877 38 H 0.089 0.911 39 H 0.066 0.934 40 H 0.410 0.590 41 H 0.133 0.867 42 H 0.139 0.861 43 H 0.109 0.891 44 H 0.286 0.714 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.575 -14.868 11.398 19.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.028 4.028 3 O -0.316 6.316 4 C 0.001 3.999 5 H 0.111 0.889 6 C -0.030 4.030 7 O -0.299 6.299 8 C -0.013 4.013 9 C -0.197 4.197 10 C 0.039 3.961 11 H 0.081 0.919 12 N -0.354 5.354 13 C 0.354 3.646 14 O -0.469 6.469 15 C -0.142 4.142 16 C -0.217 4.217 17 C -0.113 4.113 18 C -0.236 4.236 19 C 0.066 3.934 20 C -0.529 4.529 21 H 0.103 0.897 22 C -0.185 4.185 23 N -0.453 5.453 24 Si 0.803 3.197 25 H -0.175 1.175 26 H -0.197 1.197 27 H -0.184 1.184 28 C -0.151 4.151 29 H 0.065 0.935 30 H 0.113 0.887 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.141 0.859 36 H 0.073 0.927 37 H 0.141 0.859 38 H 0.107 0.893 39 H 0.084 0.916 40 H 0.247 0.753 41 H 0.151 0.849 42 H 0.157 0.843 43 H 0.127 0.873 44 H 0.097 0.903 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 4.573 -13.964 12.068 19.014 hybrid contribution -0.398 0.924 -0.718 1.236 sum 4.174 -13.040 11.350 17.785 Atomic orbital electron populations 1.21776 0.93559 1.03383 1.02231 1.22801 0.95948 0.82448 1.01588 1.88026 1.19795 1.28630 1.95115 1.22975 0.82382 0.97215 0.97305 0.88908 1.23084 0.81235 1.04033 0.94685 1.87941 1.21346 1.41560 1.79030 1.22693 1.01746 0.86819 0.90000 1.22602 0.93992 1.03691 0.99462 1.21148 0.95082 0.98430 0.81442 0.91876 1.45637 1.69533 1.08425 1.11798 1.18719 0.75371 0.83702 0.86813 1.90661 1.54069 1.30324 1.71854 1.19774 1.06312 0.95562 0.92540 1.20814 1.10057 0.94723 0.96078 1.20917 0.98487 0.97899 0.93961 1.21417 1.09399 0.92423 1.00407 1.17936 0.89571 0.93877 0.92002 1.19860 1.43452 0.94124 0.95427 0.89688 1.26862 0.91297 1.04997 0.95331 1.69893 1.30281 1.31654 1.13422 0.85239 0.80046 0.75439 0.78952 1.17545 1.19716 1.18417 1.21436 1.01440 0.96568 0.95642 0.93545 0.88681 0.92351 0.92153 0.91128 0.92477 0.85935 0.92730 0.85884 0.89263 0.91565 0.75270 0.84935 0.84299 0.87255 0.90334 0.88425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 10.28 71.98 0.74 -1.81 16 2 C 0.05 0.80 6.47 71.98 0.47 1.27 16 3 O -0.40 -9.56 9.92 -148.98 -1.48 -11.04 16 4 C 0.06 1.28 2.31 30.68 0.07 1.35 16 5 H 0.09 1.63 7.79 -2.39 -0.02 1.61 16 6 C 0.05 0.87 6.47 72.01 0.47 1.33 16 7 O -0.38 -7.60 10.77 -148.98 -1.60 -9.20 16 8 C 0.06 1.26 6.84 72.02 0.49 1.76 16 9 C -0.16 -3.87 5.72 30.69 0.18 -3.70 16 10 C 0.14 4.12 2.22 45.11 0.10 4.22 16 11 H 0.06 2.23 7.58 -2.39 -0.02 2.21 16 12 N -0.70 -23.27 4.96 -444.82 -2.21 -25.47 16 13 C 0.56 25.48 7.74 86.80 0.67 26.15 16 14 O -0.59 -31.21 16.00 -3.88 -0.06 -31.27 16 15 C -0.14 -6.70 5.87 -20.14 -0.12 -6.82 16 16 C -0.20 -7.86 9.55 22.70 0.22 -7.64 16 17 C -0.09 -3.77 10.01 22.18 0.22 -3.55 16 18 C -0.22 -10.20 9.78 22.77 0.22 -9.98 16 19 C 0.07 3.76 5.57 -21.32 -0.12 3.64 16 20 C -0.50 -27.50 9.05 23.47 0.21 -27.29 16 21 H 0.09 4.39 7.90 -2.91 -0.02 4.37 16 22 C 0.03 1.59 5.14 85.25 0.44 2.03 16 23 N -0.83 -47.00 10.97 21.82 0.24 -46.76 16 24 Si 0.98 40.06 29.59 68.60 2.03 42.09 16 25 H -0.25 -9.61 7.11 99.48 0.71 -8.90 16 26 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 27 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 28 C -0.13 -7.37 8.23 23.01 0.19 -7.18 16 29 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.06 0.88 8.09 -2.39 -0.02 0.86 16 33 H 0.07 0.85 7.96 -2.39 -0.02 0.83 16 34 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 35 H 0.12 1.64 7.96 -2.39 -0.02 1.62 16 36 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 40 H 0.41 11.29 6.62 -92.71 -0.61 10.68 16 41 H 0.13 4.05 6.38 -2.91 -0.02 4.03 16 42 H 0.14 4.28 8.06 -2.91 -0.02 4.26 16 43 H 0.11 4.73 8.06 -2.91 -0.02 4.71 16 44 H 0.29 15.05 8.30 -92.71 -0.77 14.28 16 45 H 0.10 6.16 5.76 -2.91 -0.02 6.14 16 Total: -1.00 -71.74 370.36 1.75 -69.99 By element: Atomic # 1 Polarization: 37.48 SS G_CDS: 0.38 Total: 37.87 kcal Atomic # 6 Polarization: -30.65 SS G_CDS: 4.45 Total: -26.20 kcal Atomic # 7 Polarization: -70.27 SS G_CDS: -1.97 Total: -72.24 kcal Atomic # 8 Polarization: -48.37 SS G_CDS: -3.14 Total: -51.51 kcal Atomic # 14 Polarization: 40.06 SS G_CDS: 2.03 Total: 42.09 kcal Total: -71.74 1.75 -69.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353187024.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.122 kcal (2) G-P(sol) polarization free energy of solvation -71.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds