Wall clock time and date at job start Sat Apr 11 2020 00:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42905 * 109.47006 * 2 1 4 4 C 1.42899 * 114.00225 * 180.02562 * 3 2 1 5 5 H 1.09007 * 109.57324 * 29.84142 * 4 3 2 6 6 C 1.53093 * 109.52307 * 269.68840 * 4 3 2 7 7 O 1.42904 * 109.41200 * 297.70482 * 6 4 3 8 8 C 1.42908 * 114.09350 * 298.83983 * 7 6 4 9 9 C 1.53089 * 109.41534 * 61.15904 * 8 7 6 10 10 C 1.53170 * 109.16460 * 302.39057 * 9 8 7 11 11 H 1.08995 * 109.62237 * 297.06970 * 10 9 8 12 12 N 1.46504 * 109.54195 * 176.84448 * 10 9 8 13 13 C 1.34775 * 119.99807 * 85.44623 * 12 10 9 14 14 O 1.21551 * 120.00258 * 0.02562 * 13 12 10 15 15 C 1.47883 * 120.00249 * 179.97438 * 13 12 10 16 16 C 1.39924 * 120.02337 * 359.72375 * 15 13 12 17 17 C 1.38329 * 120.35753 * 180.27953 * 16 15 13 18 18 C 1.37751 * 120.41272 * 359.97438 * 17 16 15 19 19 C 1.40749 * 120.03902 * 0.02562 * 18 17 16 20 20 C 1.41437 * 120.17223 * 179.97438 * 19 18 17 21 21 H 1.08003 * 119.99961 * 155.20329 * 20 19 18 22 22 C 1.39936 * 120.00646 * 335.19274 * 20 19 18 23 23 N 1.30828 * 119.99699 * 342.20389 * 22 20 19 24 24 Si 1.86795 * 120.00349 * 162.19473 * 22 20 19 25 25 H 1.48499 * 109.47037 * 94.66461 * 24 22 20 26 26 H 1.48496 * 109.47358 * 214.66683 * 24 22 20 27 27 H 1.48510 * 109.46857 * 334.66494 * 24 22 20 28 28 C 1.39000 * 120.02721 * 180.02562 * 15 13 12 29 29 H 1.08999 * 109.47247 * 59.99880 * 1 2 3 30 30 H 1.09000 * 109.46566 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46925 * 299.99618 * 1 2 3 32 32 H 1.09003 * 109.46925 * 240.00382 * 2 1 3 33 33 H 1.08999 * 109.47247 * 120.00120 * 2 1 3 34 34 H 1.09009 * 109.47972 * 57.68284 * 6 4 3 35 35 H 1.08993 * 109.48010 * 177.71444 * 6 4 3 36 36 H 1.09002 * 109.47788 * 181.14510 * 8 7 6 37 37 H 1.08998 * 109.47854 * 301.16530 * 8 7 6 38 38 H 1.09001 * 109.52031 * 182.48029 * 9 8 7 39 39 H 1.09004 * 109.51762 * 62.30189 * 9 8 7 40 40 H 0.96992 * 120.00365 * 265.44536 * 12 10 9 41 41 H 1.08002 * 119.81951 * 0.25426 * 16 15 13 42 42 H 1.08003 * 119.79193 * 179.97438 * 17 16 15 43 43 H 1.07995 * 119.97907 * 180.02562 * 18 17 16 44 44 H 0.96998 * 119.99914 * 179.97438 * 23 22 20 45 45 H 1.07996 * 120.19752 * 359.70032 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 1 3.8651 0.6011 -0.5120 6 6 3.9409 1.5083 1.4421 7 8 3.4161 2.6672 2.0931 8 6 3.8067 3.9023 1.4898 9 6 3.2914 3.9504 0.0490 10 6 3.8421 2.7472 -0.7224 11 1 4.9294 2.8081 -0.7680 12 7 3.2940 2.7435 -2.0810 13 6 3.8922 3.4633 -3.0509 14 8 4.8866 4.1150 -2.7984 15 6 3.3393 3.4592 -4.4225 16 6 2.1986 2.7037 -4.7153 17 6 1.6790 2.6903 -5.9972 18 6 2.2778 3.4206 -7.0000 19 6 3.4260 4.1866 -6.7244 20 6 4.0434 4.9371 -7.7520 21 1 4.6383 5.8039 -7.5048 22 6 3.8838 4.5564 -9.0891 23 7 3.4760 3.3481 -9.3810 24 14 4.2526 5.7736 -10.4572 25 1 5.6466 5.5789 -10.9305 26 1 3.3116 5.5516 -11.5844 27 1 4.0927 7.1581 -9.9444 28 6 3.9562 4.2009 -5.4232 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8900 34 1 3.6144 0.6140 1.9730 35 1 5.0299 1.5535 1.4413 36 1 3.3837 4.7328 2.0551 37 1 4.8940 3.9790 1.4899 38 1 3.6258 4.8723 -0.4268 39 1 2.2020 3.9147 0.0505 40 1 2.5007 2.2232 -2.2826 41 1 1.7214 2.1276 -3.9363 42 1 0.7983 2.1036 -6.2132 43 1 1.8660 3.4055 -7.9983 44 1 3.3649 3.0843 -10.3078 45 1 4.8368 4.7854 -5.2017 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353187028.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:01:34 Heat of formation + Delta-G solvation = -118.122429 kcal Electronic energy + Delta-G solvation = -26919.159538 eV Core-core repulsion = 23093.973072 eV Total energy + Delta-G solvation = -3825.186466 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.35526 -38.89485 -37.36249 -37.04914 -34.77155 -33.74974 -31.85388 -31.40128 -30.02642 -29.86493 -29.31392 -25.49278 -24.84367 -23.63969 -23.02446 -22.26836 -20.78393 -20.31885 -19.74099 -17.95196 -16.95841 -16.85076 -16.35944 -16.01758 -15.72891 -15.26855 -15.05481 -14.93490 -14.55939 -14.30064 -14.08904 -13.72301 -13.38986 -13.16175 -13.04116 -12.80213 -12.55711 -12.42876 -12.31360 -11.94947 -11.69032 -11.49496 -11.43519 -11.19604 -11.10701 -10.90868 -10.80601 -10.71011 -10.54642 -10.23209 -10.16420 -9.57427 -9.45448 -9.23310 -9.08171 -8.75845 -7.64449 -7.54905 -6.84292 -4.44062 2.16177 2.72920 3.04795 3.07693 3.13914 3.31771 3.48682 3.79636 3.84803 3.90480 4.41859 4.57419 4.63341 4.69351 4.87538 4.95497 5.08052 5.12918 5.15519 5.17218 5.24632 5.38664 5.44108 5.55796 5.58032 5.72343 5.73935 5.77591 5.91259 5.96320 6.11365 6.22141 6.26689 6.75726 6.86910 6.87954 6.91691 7.00026 7.12210 7.14159 7.34191 7.62585 7.79319 7.92646 7.96737 8.18127 8.50888 8.76344 8.81021 8.83908 10.11375 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.021751 B = 0.002866 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.967147 B = 9767.303743 C =10734.792534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.365 6.365 4 C 0.048 3.952 5 H 0.076 0.924 6 C 0.045 3.955 7 O -0.372 6.372 8 C 0.064 3.936 9 C -0.163 4.163 10 C 0.152 3.848 11 H 0.097 0.903 12 N -0.725 5.725 13 C 0.566 3.434 14 O -0.554 6.554 15 C -0.119 4.119 16 C -0.208 4.208 17 C -0.111 4.111 18 C -0.143 4.143 19 C 0.099 3.901 20 C -0.460 4.460 21 H 0.081 0.919 22 C 0.076 3.924 23 N -0.794 5.794 24 Si 0.909 3.091 25 H -0.270 1.270 26 H -0.275 1.275 27 H -0.259 1.259 28 C -0.154 4.154 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.049 0.951 33 H 0.046 0.954 34 H 0.096 0.904 35 H 0.062 0.938 36 H 0.096 0.904 37 H 0.051 0.949 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.404 0.596 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.121 0.879 44 H 0.281 0.719 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.158 -6.514 16.109 17.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.023 4.023 3 O -0.284 6.284 4 C -0.011 4.011 5 H 0.094 0.906 6 C -0.033 4.033 7 O -0.291 6.291 8 C -0.013 4.013 9 C -0.202 4.202 10 C 0.047 3.953 11 H 0.115 0.885 12 N -0.378 5.378 13 C 0.357 3.643 14 O -0.433 6.433 15 C -0.122 4.122 16 C -0.228 4.228 17 C -0.130 4.130 18 C -0.163 4.163 19 C 0.097 3.903 20 C -0.489 4.489 21 H 0.099 0.901 22 C -0.142 4.142 23 N -0.419 5.419 24 Si 0.733 3.267 25 H -0.195 1.195 26 H -0.200 1.200 27 H -0.183 1.183 28 C -0.175 4.175 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.114 0.886 35 H 0.080 0.920 36 H 0.114 0.886 37 H 0.070 0.930 38 H 0.099 0.901 39 H 0.100 0.900 40 H 0.241 0.759 41 H 0.108 0.892 42 H 0.112 0.888 43 H 0.139 0.861 44 H 0.092 0.908 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -2.730 -6.061 16.239 17.547 hybrid contribution 0.085 -0.177 -1.087 1.105 sum -2.646 -6.238 15.152 16.598 Atomic orbital electron populations 1.21727 0.93554 1.02157 1.03354 1.22559 0.95875 0.83913 0.99909 1.88003 1.19394 1.26145 1.94880 1.23081 0.83046 0.98565 0.96411 0.90625 1.23022 0.97925 0.89817 0.92491 1.87946 1.74060 1.13555 1.53493 1.22598 0.98853 0.86633 0.93256 1.22544 1.02879 0.99284 0.95484 1.20933 0.99066 0.93162 0.82153 0.88544 1.45904 1.32440 1.51328 1.08124 1.18899 0.82537 0.77580 0.85316 1.90666 1.26210 1.43062 1.83374 1.19306 0.98383 1.03135 0.91361 1.20402 0.99697 1.06156 0.96528 1.20610 0.99122 0.99995 0.93246 1.21499 0.95989 1.00139 0.98631 1.17581 0.90562 0.90939 0.91261 1.19599 1.27796 1.11279 0.90228 0.90126 1.25909 0.92844 0.95090 1.00363 1.69805 1.34159 1.16868 1.21116 0.86279 0.78973 0.81687 0.79725 1.19507 1.20005 1.18317 1.21207 1.00384 1.02809 0.93060 0.91597 0.91228 0.91832 0.93246 0.93566 0.88554 0.92012 0.88558 0.93046 0.90138 0.89975 0.75914 0.89201 0.88819 0.86076 0.90760 0.87466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 10.28 37.16 0.38 -0.87 16 2 C 0.05 0.49 6.47 37.16 0.24 0.73 16 3 O -0.37 -4.26 8.78 -42.73 -0.38 -4.64 16 4 C 0.05 0.53 2.59 -26.59 -0.07 0.46 16 5 H 0.08 0.75 7.79 -51.93 -0.40 0.34 16 6 C 0.05 0.44 6.49 37.21 0.24 0.68 16 7 O -0.37 -4.40 10.70 -42.73 -0.46 -4.86 16 8 C 0.06 0.70 6.84 37.20 0.25 0.95 16 9 C -0.16 -2.14 5.56 -26.60 -0.15 -2.28 16 10 C 0.15 2.08 2.33 -67.75 -0.16 1.92 16 11 H 0.10 1.39 7.57 -51.93 -0.39 1.00 16 12 N -0.72 -11.73 5.00 -54.56 -0.27 -12.00 16 13 C 0.57 11.67 7.74 -12.31 -0.10 11.57 16 14 O -0.55 -12.75 15.99 5.32 0.09 -12.67 16 15 C -0.12 -2.70 5.87 -105.04 -0.62 -3.32 16 16 C -0.21 -4.36 9.55 -38.92 -0.37 -4.74 16 17 C -0.11 -2.46 10.01 -39.73 -0.40 -2.86 16 18 C -0.14 -3.58 8.69 -38.81 -0.34 -3.92 16 19 C 0.10 2.61 5.57 -106.87 -0.59 2.02 16 20 C -0.46 -12.10 9.05 -37.73 -0.34 -12.44 16 21 H 0.08 2.06 7.91 -52.48 -0.41 1.65 16 22 C 0.08 1.87 5.13 -17.34 -0.09 1.78 16 23 N -0.79 -20.03 10.97 55.55 0.61 -19.42 16 24 Si 0.91 18.41 29.59 -169.99 -5.03 13.37 16 25 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 26 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 27 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 28 C -0.15 -3.90 9.34 -38.44 -0.36 -4.26 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.43 8.09 -51.93 -0.42 0.01 16 33 H 0.05 0.36 7.86 -51.93 -0.41 -0.05 16 34 H 0.10 0.78 7.86 -51.92 -0.41 0.37 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.08 1.15 7.83 -51.93 -0.41 0.74 16 40 H 0.40 6.11 6.12 -40.82 -0.25 5.86 16 41 H 0.09 1.59 6.38 -52.49 -0.33 1.26 16 42 H 0.09 1.81 8.06 -52.48 -0.42 1.39 16 43 H 0.12 3.11 6.17 -52.49 -0.32 2.78 16 44 H 0.28 6.43 8.30 -40.82 -0.34 6.09 16 45 H 0.11 2.75 7.64 -52.49 -0.40 2.35 16 LS Contribution 368.43 15.07 5.55 5.55 Total: -1.00 -29.54 368.43 -9.03 -38.57 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: -6.68 Total: 10.67 kcal Atomic # 6 Polarization: -12.13 SS G_CDS: -2.46 Total: -14.58 kcal Atomic # 7 Polarization: -31.75 SS G_CDS: 0.34 Total: -31.42 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: -0.75 Total: -22.16 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -5.03 Total: 13.37 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -29.54 -9.03 -38.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353187028.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.553 kcal (2) G-P(sol) polarization free energy of solvation -29.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds