Wall clock time and date at job start Sat Apr 11 2020 00:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42901 * 109.47279 * 2 1 4 4 C 1.42902 * 113.99874 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.52417 * 330.12438 * 4 3 2 6 6 C 1.53088 * 109.57173 * 90.28609 * 4 3 2 7 7 O 1.42904 * 109.41386 * 177.54219 * 6 4 3 8 8 C 1.42903 * 114.10074 * 298.84216 * 7 6 4 9 9 C 1.53091 * 109.41370 * 61.15514 * 8 7 6 10 10 C 1.53177 * 109.16654 * 302.39521 * 9 8 7 11 11 H 1.08994 * 109.61991 * 176.89136 * 10 9 8 12 12 N 1.46503 * 109.54420 * 297.11548 * 10 9 8 13 13 C 1.34777 * 119.99639 * 274.28187 * 12 10 9 14 14 O 1.21587 * 120.00217 * 0.26774 * 13 12 10 15 15 C 1.47643 * 120.00082 * 180.27342 * 13 12 10 16 16 C 1.40015 * 119.89451 * 359.72387 * 15 13 12 17 17 C 1.36310 * 120.10632 * 179.72041 * 16 15 13 18 18 C 1.40886 * 119.89395 * 0.57252 * 17 16 15 19 19 C 1.41111 * 120.10652 * 179.71994 * 18 17 16 20 20 H 1.08001 * 119.99902 * 204.62464 * 19 18 17 21 21 C 1.40221 * 120.00070 * 24.62510 * 19 18 17 22 22 N 1.30654 * 119.99863 * 17.89587 * 21 19 18 23 23 Si 1.86793 * 120.00224 * 197.90112 * 21 19 18 24 24 H 1.48499 * 109.47386 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47429 * 119.99718 * 23 21 19 26 26 H 1.48509 * 109.47080 * 239.99591 * 23 21 19 27 27 C 1.40890 * 119.79208 * 359.70035 * 18 17 16 28 28 C 1.36320 * 119.88891 * 0.02562 * 27 18 17 29 29 H 1.08997 * 109.46817 * 59.99951 * 1 2 3 30 30 H 1.09002 * 109.46813 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46821 * 299.99609 * 1 2 3 32 32 H 1.09009 * 109.47280 * 240.00031 * 2 1 3 33 33 H 1.09003 * 109.47326 * 120.00501 * 2 1 3 34 34 H 1.09001 * 109.48153 * 297.52347 * 6 4 3 35 35 H 1.08996 * 109.48058 * 57.54973 * 6 4 3 36 36 H 1.09000 * 109.48451 * 181.13778 * 8 7 6 37 37 H 1.08997 * 109.47794 * 301.17794 * 8 7 6 38 38 H 1.09006 * 109.52582 * 182.48777 * 9 8 7 39 39 H 1.09004 * 109.52367 * 62.29637 * 9 8 7 40 40 H 0.96995 * 120.00456 * 94.54941 * 12 10 9 41 41 H 1.07998 * 119.94275 * 359.97438 * 16 15 13 42 42 H 1.08007 * 120.05679 * 180.29729 * 17 16 15 43 43 H 0.96999 * 119.99885 * 180.02562 * 22 21 19 44 44 H 1.08000 * 120.05787 * 179.97438 * 27 18 17 45 45 H 1.08004 * 119.94356 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4310 1.4600 -0.0006 5 1 3.8646 0.6007 0.5108 6 6 3.9410 1.5079 -1.4432 7 8 5.3599 1.6782 -1.4400 8 6 5.8010 2.8877 -0.8199 9 6 5.3656 2.8953 0.6478 10 6 3.8428 2.7467 0.7214 11 1 3.5301 2.6958 1.7642 12 7 3.2064 3.8968 0.0744 13 6 2.9858 5.0270 0.7748 14 8 3.3194 5.0938 1.9421 15 6 2.3389 6.1840 0.1246 16 6 1.9607 6.1067 -1.2213 17 6 1.3579 7.1702 -1.8243 18 6 1.1266 8.3529 -1.0945 19 6 0.5084 9.4587 -1.7159 20 1 0.6758 10.4554 -1.3352 21 6 -0.3234 9.2635 -2.8278 22 7 -0.8090 8.0770 -3.0800 23 14 -0.7371 10.6995 -3.9484 24 1 -0.0672 11.9268 -3.4481 25 1 -0.2662 10.4045 -5.3255 26 1 -2.2072 10.9091 -3.9622 27 6 1.5142 8.4279 0.2580 28 6 2.1112 7.3571 0.8540 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.6879 0.5763 -1.9494 35 1 3.4757 2.3436 -1.9657 36 1 6.8877 2.9502 -0.8770 37 1 5.3601 3.7416 -1.3342 38 1 5.6626 3.8363 1.1110 39 1 5.8383 2.0649 1.1723 40 1 2.9402 3.8435 -0.8567 41 1 2.1431 5.2015 -1.7814 42 1 1.0622 7.1080 -2.8612 43 1 -1.3841 7.9419 -3.8494 44 1 1.3393 9.3326 0.8214 45 1 2.4083 7.4136 1.8909 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353237850.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:01:36 Heat of formation + Delta-G solvation = -119.661393 kcal Electronic energy + Delta-G solvation = -27170.204745 eV Core-core repulsion = 23344.951545 eV Total energy + Delta-G solvation = -3825.253201 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.38305 -38.60825 -37.57736 -37.03603 -34.57363 -33.86059 -31.76863 -31.46991 -30.00869 -29.46537 -29.33294 -26.06320 -24.84888 -23.66141 -22.70202 -22.24156 -20.96588 -20.21278 -19.13975 -17.55108 -17.44303 -16.88510 -16.59829 -15.97357 -15.69227 -15.43790 -15.15139 -15.05938 -14.25883 -14.05210 -13.92991 -13.47763 -13.22299 -13.13346 -12.83566 -12.66764 -12.55822 -12.41441 -12.13398 -12.00803 -11.86080 -11.67801 -11.39007 -11.35093 -11.27812 -11.10332 -10.94502 -10.65582 -10.54378 -10.15107 -10.03043 -9.55961 -9.34406 -9.28339 -8.94937 -8.59047 -7.70965 -7.53240 -7.02896 -4.59450 2.24303 2.90800 2.95415 3.00970 3.04796 3.26920 3.74503 3.76252 3.84869 3.88828 4.49254 4.56726 4.64223 4.84404 4.91023 4.92163 4.97758 5.07115 5.18364 5.26435 5.46781 5.48487 5.57124 5.58575 5.75159 5.77318 5.80706 5.86973 6.00442 6.03101 6.06290 6.18464 6.32978 6.77569 6.82236 6.83478 6.96386 7.06844 7.14389 7.17527 7.44543 7.66307 7.80350 7.87133 8.08000 8.25282 8.40945 8.64063 8.76294 9.09703 9.89122 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.014290 B = 0.003295 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.977623 B = 8495.394232 C = 9069.433423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.366 6.366 4 C 0.051 3.949 5 H 0.079 0.921 6 C 0.040 3.960 7 O -0.378 6.378 8 C 0.057 3.943 9 C -0.163 4.163 10 C 0.152 3.848 11 H 0.094 0.906 12 N -0.728 5.728 13 C 0.575 3.425 14 O -0.576 6.576 15 C -0.283 4.283 16 C -0.061 4.061 17 C -0.178 4.178 18 C 0.129 3.871 19 C -0.443 4.443 20 H 0.085 0.915 21 C 0.075 3.925 22 N -0.771 5.771 23 Si 0.912 3.088 24 H -0.257 1.257 25 H -0.269 1.269 26 H -0.272 1.272 27 C -0.239 4.239 28 C -0.022 4.022 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.047 0.953 33 H 0.048 0.952 34 H 0.095 0.905 35 H 0.060 0.940 36 H 0.096 0.904 37 H 0.058 0.942 38 H 0.088 0.912 39 H 0.077 0.923 40 H 0.397 0.603 41 H 0.086 0.914 42 H 0.120 0.880 43 H 0.286 0.714 44 H 0.098 0.902 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.528 -13.539 -0.403 14.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.285 6.285 4 C -0.008 4.008 5 H 0.097 0.903 6 C -0.037 4.037 7 O -0.296 6.296 8 C -0.020 4.020 9 C -0.202 4.202 10 C 0.046 3.954 11 H 0.112 0.888 12 N -0.381 5.381 13 C 0.370 3.630 14 O -0.459 6.459 15 C -0.287 4.287 16 C -0.080 4.080 17 C -0.197 4.197 18 C 0.125 3.875 19 C -0.471 4.471 20 H 0.103 0.897 21 C -0.147 4.147 22 N -0.395 5.395 23 Si 0.736 3.264 24 H -0.181 1.181 25 H -0.194 1.194 26 H -0.197 1.197 27 C -0.258 4.258 28 C -0.041 4.041 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.113 0.887 35 H 0.079 0.921 36 H 0.114 0.886 37 H 0.077 0.923 38 H 0.107 0.893 39 H 0.096 0.904 40 H 0.233 0.767 41 H 0.104 0.896 42 H 0.138 0.862 43 H 0.097 0.903 44 H 0.116 0.884 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 5.590 -13.606 0.181 14.710 hybrid contribution -0.545 0.380 -0.879 1.101 sum 5.046 -13.226 -0.698 14.173 Atomic orbital electron populations 1.21741 0.93517 1.02053 1.03629 1.22561 0.95908 0.83837 0.99840 1.88068 1.19339 1.26171 1.94898 1.23003 0.82467 0.98505 0.96839 0.90332 1.23015 0.81954 1.02698 0.96083 1.87929 1.20749 1.41605 1.79342 1.22652 1.00081 0.86997 0.92220 1.22607 0.95628 1.04074 0.97913 1.20878 0.91702 0.84262 0.98604 0.88803 1.45850 1.63805 1.13285 1.15191 1.18565 0.76765 0.82221 0.85433 1.90621 1.54694 1.83396 1.17161 1.18887 1.18485 0.95527 0.95847 1.20450 0.97305 0.97032 0.93237 1.20965 1.04042 0.94357 1.00355 1.17786 0.87015 0.92396 0.90259 1.19876 1.22505 0.95200 1.09487 0.89697 1.26096 0.94099 0.97152 0.97317 1.69760 1.21684 1.23563 1.24461 0.86183 0.78940 0.81557 0.79741 1.18058 1.19388 1.19674 1.20713 1.11018 0.98786 0.95326 1.20354 0.94218 0.91908 0.97618 0.91591 0.91237 0.91659 0.93463 0.93406 0.88684 0.92136 0.88557 0.92319 0.89315 0.90431 0.76722 0.89557 0.86240 0.90300 0.88419 0.88149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 10.28 37.16 0.38 -1.06 16 2 C 0.06 0.55 6.47 37.16 0.24 0.79 16 3 O -0.37 -4.86 9.81 -35.23 -0.35 -5.21 16 4 C 0.05 0.61 2.53 -26.59 -0.07 0.54 16 5 H 0.08 0.82 7.79 -51.93 -0.40 0.41 16 6 C 0.04 0.46 6.29 37.20 0.23 0.69 16 7 O -0.38 -4.63 10.77 -35.23 -0.38 -5.01 16 8 C 0.06 0.67 6.68 37.20 0.25 0.92 16 9 C -0.16 -2.04 5.81 -26.59 -0.15 -2.20 16 10 C 0.15 2.19 2.53 -67.74 -0.17 2.02 16 11 H 0.09 1.53 7.57 -51.93 -0.39 1.14 16 12 N -0.73 -12.43 4.16 -54.63 -0.23 -12.65 16 13 C 0.58 12.26 7.74 -12.42 -0.10 12.16 16 14 O -0.58 -13.60 15.98 5.29 0.08 -13.51 16 15 C -0.28 -6.52 5.89 -104.73 -0.62 -7.14 16 16 C -0.06 -1.37 9.47 -39.61 -0.38 -1.75 16 17 C -0.18 -4.39 8.64 -39.27 -0.34 -4.73 16 18 C 0.13 3.29 5.58 -106.80 -0.60 2.70 16 19 C -0.44 -11.06 9.04 -37.75 -0.34 -11.40 16 20 H 0.08 2.03 7.91 -52.49 -0.42 1.61 16 21 C 0.07 1.74 5.13 -17.31 -0.09 1.65 16 22 N -0.77 -18.57 10.95 55.56 0.61 -17.96 16 23 Si 0.91 17.29 29.60 -169.99 -5.03 12.26 16 24 H -0.26 -4.85 7.11 56.52 0.40 -4.44 16 25 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 26 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 27 C -0.24 -5.82 9.73 -39.27 -0.38 -6.20 16 28 C -0.02 -0.52 9.52 -39.61 -0.38 -0.89 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.05 0.40 7.96 -51.92 -0.41 -0.02 16 33 H 0.05 0.42 8.09 -51.93 -0.42 0.00 16 34 H 0.10 0.92 7.96 -51.93 -0.41 0.50 16 35 H 0.06 0.73 6.71 -51.93 -0.35 0.38 16 36 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.06 0.75 7.75 -51.93 -0.40 0.35 16 38 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.40 6.42 5.07 -40.82 -0.21 6.22 16 41 H 0.09 1.68 6.37 -52.49 -0.33 1.35 16 42 H 0.12 2.99 6.15 -52.48 -0.32 2.66 16 43 H 0.29 6.16 8.29 -40.82 -0.34 5.83 16 44 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 45 H 0.10 2.31 7.63 -52.48 -0.40 1.91 16 LS Contribution 366.09 15.07 5.52 5.52 Total: -1.00 -28.85 366.09 -8.84 -37.69 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: -6.57 Total: 12.77 kcal Atomic # 6 Polarization: -11.39 SS G_CDS: -2.50 Total: -13.89 kcal Atomic # 7 Polarization: -30.99 SS G_CDS: 0.38 Total: -30.61 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: -0.64 Total: -23.73 kcal Atomic # 14 Polarization: 17.29 SS G_CDS: -5.03 Total: 12.26 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -28.85 -8.84 -37.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353237850.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.967 kcal (2) G-P(sol) polarization free energy of solvation -28.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds