Wall clock time and date at job start Sat Apr 11 2020 00:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42901 * 109.47279 * 2 1 4 4 C 1.42902 * 113.99874 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.52417 * 330.12438 * 4 3 2 6 6 C 1.53088 * 109.57173 * 90.28609 * 4 3 2 7 7 O 1.42904 * 109.41386 * 177.54219 * 6 4 3 8 8 C 1.42903 * 114.10074 * 298.84216 * 7 6 4 9 9 C 1.53091 * 109.41370 * 61.15514 * 8 7 6 10 10 C 1.53177 * 109.16654 * 302.39521 * 9 8 7 11 11 H 1.08994 * 109.61991 * 176.89136 * 10 9 8 12 12 N 1.46503 * 109.54420 * 297.11548 * 10 9 8 13 13 C 1.34777 * 119.99639 * 274.28187 * 12 10 9 14 14 O 1.21587 * 120.00217 * 0.26774 * 13 12 10 15 15 C 1.47643 * 120.00082 * 180.27342 * 13 12 10 16 16 C 1.40015 * 119.89451 * 359.72387 * 15 13 12 17 17 C 1.36310 * 120.10632 * 179.72041 * 16 15 13 18 18 C 1.40886 * 119.89395 * 0.57252 * 17 16 15 19 19 C 1.41111 * 120.10652 * 179.71994 * 18 17 16 20 20 H 1.08001 * 119.99902 * 204.62464 * 19 18 17 21 21 C 1.40221 * 120.00070 * 24.62510 * 19 18 17 22 22 N 1.30654 * 119.99863 * 17.89587 * 21 19 18 23 23 Si 1.86793 * 120.00224 * 197.90112 * 21 19 18 24 24 H 1.48499 * 109.47386 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47429 * 119.99718 * 23 21 19 26 26 H 1.48509 * 109.47080 * 239.99591 * 23 21 19 27 27 C 1.40890 * 119.79208 * 359.70035 * 18 17 16 28 28 C 1.36320 * 119.88891 * 0.02562 * 27 18 17 29 29 H 1.08997 * 109.46817 * 59.99951 * 1 2 3 30 30 H 1.09002 * 109.46813 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46821 * 299.99609 * 1 2 3 32 32 H 1.09009 * 109.47280 * 240.00031 * 2 1 3 33 33 H 1.09003 * 109.47326 * 120.00501 * 2 1 3 34 34 H 1.09001 * 109.48153 * 297.52347 * 6 4 3 35 35 H 1.08996 * 109.48058 * 57.54973 * 6 4 3 36 36 H 1.09000 * 109.48451 * 181.13778 * 8 7 6 37 37 H 1.08997 * 109.47794 * 301.17794 * 8 7 6 38 38 H 1.09006 * 109.52582 * 182.48777 * 9 8 7 39 39 H 1.09004 * 109.52367 * 62.29637 * 9 8 7 40 40 H 0.96995 * 120.00456 * 94.54941 * 12 10 9 41 41 H 1.07998 * 119.94275 * 359.97438 * 16 15 13 42 42 H 1.08007 * 120.05679 * 180.29729 * 17 16 15 43 43 H 0.96999 * 119.99885 * 180.02562 * 22 21 19 44 44 H 1.08000 * 120.05787 * 179.97438 * 27 18 17 45 45 H 1.08004 * 119.94356 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4310 1.4600 -0.0006 5 1 3.8646 0.6007 0.5108 6 6 3.9410 1.5079 -1.4432 7 8 5.3599 1.6782 -1.4400 8 6 5.8010 2.8877 -0.8199 9 6 5.3656 2.8953 0.6478 10 6 3.8428 2.7467 0.7214 11 1 3.5301 2.6958 1.7642 12 7 3.2064 3.8968 0.0744 13 6 2.9858 5.0270 0.7748 14 8 3.3194 5.0938 1.9421 15 6 2.3389 6.1840 0.1246 16 6 1.9607 6.1067 -1.2213 17 6 1.3579 7.1702 -1.8243 18 6 1.1266 8.3529 -1.0945 19 6 0.5084 9.4587 -1.7159 20 1 0.6758 10.4554 -1.3352 21 6 -0.3234 9.2635 -2.8278 22 7 -0.8090 8.0770 -3.0800 23 14 -0.7371 10.6995 -3.9484 24 1 -0.0672 11.9268 -3.4481 25 1 -0.2662 10.4045 -5.3255 26 1 -2.2072 10.9091 -3.9622 27 6 1.5142 8.4279 0.2580 28 6 2.1112 7.3571 0.8540 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.6879 0.5763 -1.9494 35 1 3.4757 2.3436 -1.9657 36 1 6.8877 2.9502 -0.8770 37 1 5.3601 3.7416 -1.3342 38 1 5.6626 3.8363 1.1110 39 1 5.8383 2.0649 1.1723 40 1 2.9402 3.8435 -0.8567 41 1 2.1431 5.2015 -1.7814 42 1 1.0622 7.1080 -2.8612 43 1 -1.3841 7.9419 -3.8494 44 1 1.3393 9.3326 0.8214 45 1 2.4083 7.4136 1.8909 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353237850.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:01:35 Heat of formation + Delta-G solvation = -136.741176 kcal Electronic energy + Delta-G solvation = -27170.945380 eV Core-core repulsion = 23344.951545 eV Total energy + Delta-G solvation = -3825.993835 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.57358 -40.14723 -38.81586 -38.47683 -35.89804 -35.67503 -33.00957 -32.50055 -31.56347 -31.29206 -30.43004 -27.78206 -26.00172 -24.58336 -23.91012 -23.51423 -22.81334 -21.73216 -20.49206 -19.37618 -18.82233 -18.01421 -17.56512 -17.30754 -16.96649 -16.78925 -16.25467 -16.11142 -15.75593 -15.67016 -15.37409 -15.04401 -14.59152 -14.41625 -14.25824 -13.97310 -13.69601 -13.67265 -13.51434 -13.26958 -13.20401 -12.98468 -12.84637 -12.64675 -12.52587 -12.37822 -12.23245 -12.05237 -11.76270 -11.50651 -11.38697 -11.12850 -11.06628 -10.69856 -10.22980 -10.05705 -9.58619 -9.41428 -8.79977 -6.48939 0.43604 1.13962 1.38430 1.41980 1.55450 2.11724 2.17514 2.26617 2.48188 2.78026 2.94927 3.52238 3.66058 3.70558 3.86048 3.94543 4.00936 4.17123 4.21153 4.26691 4.30980 4.34586 4.43842 4.48137 4.57759 4.65913 4.75067 4.78733 4.84800 4.91168 4.96342 5.00299 5.02883 5.03231 5.15030 5.26178 5.29003 5.54070 5.58808 5.81087 5.93259 5.97353 5.98748 6.21680 6.28561 6.53161 6.66668 6.76488 6.88035 7.43361 8.15536 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.014290 B = 0.003295 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.977623 B = 8495.394232 C = 9069.433423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.048 3.952 3 O -0.395 6.395 4 C 0.059 3.941 5 H 0.102 0.898 6 C 0.040 3.960 7 O -0.379 6.379 8 C 0.059 3.941 9 C -0.156 4.156 10 C 0.143 3.857 11 H 0.073 0.927 12 N -0.712 5.712 13 C 0.575 3.425 14 O -0.603 6.603 15 C -0.293 4.293 16 C -0.053 4.053 17 C -0.197 4.197 18 C 0.102 3.898 19 C -0.473 4.473 20 H 0.086 0.914 21 C 0.038 3.962 22 N -0.799 5.799 23 Si 0.988 3.012 24 H -0.257 1.257 25 H -0.260 1.260 26 H -0.264 1.264 27 C -0.252 4.252 28 C -0.032 4.032 29 H 0.054 0.946 30 H 0.095 0.905 31 H 0.048 0.952 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.119 0.881 35 H 0.050 0.950 36 H 0.118 0.882 37 H 0.044 0.956 38 H 0.069 0.931 39 H 0.102 0.898 40 H 0.402 0.598 41 H 0.115 0.885 42 H 0.113 0.887 43 H 0.297 0.703 44 H 0.105 0.895 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.932 -15.076 -1.766 16.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.027 4.027 3 O -0.314 6.314 4 C 0.000 4.000 5 H 0.120 0.880 6 C -0.037 4.037 7 O -0.298 6.298 8 C -0.017 4.017 9 C -0.195 4.195 10 C 0.038 3.962 11 H 0.091 0.909 12 N -0.363 5.363 13 C 0.369 3.631 14 O -0.488 6.488 15 C -0.298 4.298 16 C -0.072 4.072 17 C -0.216 4.216 18 C 0.099 3.901 19 C -0.500 4.500 20 H 0.104 0.896 21 C -0.181 4.181 22 N -0.422 5.422 23 Si 0.807 3.193 24 H -0.180 1.180 25 H -0.184 1.184 26 H -0.188 1.188 27 C -0.272 4.272 28 C -0.051 4.051 29 H 0.073 0.927 30 H 0.113 0.887 31 H 0.067 0.933 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.137 0.863 35 H 0.069 0.931 36 H 0.136 0.864 37 H 0.063 0.937 38 H 0.088 0.912 39 H 0.120 0.880 40 H 0.239 0.761 41 H 0.133 0.867 42 H 0.131 0.869 43 H 0.108 0.892 44 H 0.123 0.877 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 6.003 -15.190 -1.190 16.376 hybrid contribution -0.683 0.744 -0.400 1.086 sum 5.320 -14.446 -1.590 15.476 Atomic orbital electron populations 1.21775 0.93595 1.03332 1.02237 1.22786 0.95910 0.82588 1.01453 1.88037 1.19877 1.28437 1.95089 1.22958 0.82359 0.97519 0.97170 0.88040 1.23090 0.81485 1.03523 0.95601 1.87939 1.21125 1.41463 1.79247 1.22678 1.01325 0.86523 0.91211 1.22543 0.94069 1.04082 0.98811 1.21133 0.92929 0.84448 0.97649 0.90901 1.45707 1.62647 1.12860 1.15133 1.18347 0.76696 0.82922 0.85122 1.90601 1.55942 1.84023 1.18235 1.19184 1.18299 0.96102 0.96203 1.20649 0.95923 0.97486 0.93109 1.20989 1.05372 0.95033 1.00202 1.18128 0.87806 0.93287 0.90883 1.20145 1.23660 0.95121 1.11104 0.89625 1.26937 0.93227 0.99950 0.97961 1.69777 1.21843 1.25429 1.25183 0.85065 0.78871 0.77735 0.77584 1.17992 1.18401 1.18826 1.20856 1.11590 0.99391 0.95350 1.20497 0.94374 0.92326 0.97905 0.92664 0.88658 0.93323 0.91373 0.92130 0.86329 0.93129 0.86368 0.93730 0.91237 0.87990 0.76092 0.86702 0.86898 0.89182 0.87736 0.87912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 10.28 71.98 0.74 -1.93 16 2 C 0.05 0.85 6.47 71.98 0.47 1.32 16 3 O -0.39 -9.85 9.81 -148.98 -1.46 -11.31 16 4 C 0.06 1.28 2.53 30.68 0.08 1.36 16 5 H 0.10 1.78 7.79 -2.39 -0.02 1.76 16 6 C 0.04 0.81 6.29 72.01 0.45 1.27 16 7 O -0.38 -8.23 10.77 -148.98 -1.60 -9.84 16 8 C 0.06 1.28 6.68 72.01 0.48 1.76 16 9 C -0.16 -3.68 5.81 30.68 0.18 -3.51 16 10 C 0.14 4.01 2.53 45.11 0.11 4.13 16 11 H 0.07 2.37 7.57 -2.39 -0.02 2.35 16 12 N -0.71 -24.03 4.16 -445.02 -1.85 -25.89 16 13 C 0.58 24.78 7.74 86.73 0.67 25.45 16 14 O -0.60 -28.97 15.98 -3.99 -0.06 -29.04 16 15 C -0.29 -13.74 5.89 -19.93 -0.12 -13.86 16 16 C -0.05 -2.38 9.47 22.25 0.21 -2.17 16 17 C -0.20 -9.89 8.64 22.47 0.19 -9.70 16 18 C 0.10 5.37 5.58 -21.28 -0.12 5.26 16 19 C -0.47 -24.09 9.04 23.46 0.21 -23.88 16 20 H 0.09 4.19 7.91 -2.91 -0.02 4.16 16 21 C 0.04 1.78 5.13 85.35 0.44 2.22 16 22 N -0.80 -38.55 10.95 21.87 0.24 -38.31 16 23 Si 0.99 34.91 29.60 68.60 2.03 36.94 16 24 H -0.26 -8.96 7.11 99.48 0.71 -8.25 16 25 H -0.26 -8.74 7.11 99.48 0.71 -8.04 16 26 H -0.26 -8.94 7.11 99.48 0.71 -8.23 16 27 C -0.25 -12.71 9.73 22.47 0.22 -12.49 16 28 C -0.03 -1.56 9.52 22.25 0.21 -1.34 16 29 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.07 0.91 7.96 -2.38 -0.02 0.90 16 33 H 0.06 0.91 8.09 -2.39 -0.02 0.89 16 34 H 0.12 1.86 7.96 -2.39 -0.02 1.84 16 35 H 0.05 1.13 6.71 -2.39 -0.02 1.11 16 36 H 0.12 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.04 1.09 7.75 -2.39 -0.02 1.07 16 38 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 39 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.40 12.71 5.07 -92.71 -0.47 12.24 16 41 H 0.12 4.40 6.37 -2.91 -0.02 4.38 16 42 H 0.11 5.76 6.15 -2.91 -0.02 5.74 16 43 H 0.30 12.67 8.29 -92.71 -0.77 11.90 16 44 H 0.10 4.93 8.06 -2.91 -0.02 4.91 16 45 H 0.10 4.88 7.63 -2.91 -0.02 4.86 16 Total: -1.00 -63.25 366.09 2.25 -61.00 By element: Atomic # 1 Polarization: 42.03 SS G_CDS: 0.53 Total: 42.57 kcal Atomic # 6 Polarization: -30.56 SS G_CDS: 4.43 Total: -26.13 kcal Atomic # 7 Polarization: -62.58 SS G_CDS: -1.61 Total: -64.19 kcal Atomic # 8 Polarization: -47.05 SS G_CDS: -3.13 Total: -50.18 kcal Atomic # 14 Polarization: 34.91 SS G_CDS: 2.03 Total: 36.94 kcal Total: -63.25 2.25 -61.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353237850.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.744 kcal (2) G-P(sol) polarization free energy of solvation -63.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds