Wall clock time and date at job start Sat Apr 11 2020 00:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42904 * 109.47153 * 2 1 4 4 C 1.42901 * 113.99824 * 179.97438 * 3 2 1 5 5 H 1.08995 * 109.52277 * 29.87361 * 4 3 2 6 6 C 1.53092 * 109.57325 * 269.71656 * 4 3 2 7 7 O 1.42908 * 109.41664 * 297.67182 * 6 4 3 8 8 C 1.42906 * 114.09831 * 298.84432 * 7 6 4 9 9 C 1.53099 * 109.48615 * 61.11112 * 8 7 6 10 10 C 1.53178 * 109.15599 * 302.52305 * 9 8 7 11 11 H 1.09001 * 109.54729 * 296.93515 * 10 9 8 12 12 N 1.46508 * 109.54169 * 176.75923 * 10 9 8 13 13 C 1.34774 * 119.99848 * 85.18157 * 12 10 9 14 14 O 1.21592 * 120.00117 * 359.97438 * 13 12 10 15 15 C 1.47645 * 119.99903 * 179.97438 * 13 12 10 16 16 C 1.40011 * 119.89359 * 179.97438 * 15 13 12 17 17 C 1.36314 * 120.10511 * 180.29799 * 16 15 13 18 18 C 1.40891 * 119.89341 * 359.47650 * 17 16 15 19 19 C 1.41107 * 120.10542 * 180.27298 * 18 17 16 20 20 H 1.07998 * 119.99800 * 330.39981 * 19 18 17 21 21 C 1.40228 * 119.99982 * 150.40110 * 19 18 17 22 22 N 1.30640 * 120.00193 * 161.74714 * 21 19 18 23 23 Si 1.86802 * 119.99847 * 341.74760 * 21 19 18 24 24 H 1.48502 * 109.46967 * 95.41207 * 23 21 19 25 25 H 1.48492 * 109.46905 * 215.41273 * 23 21 19 26 26 H 1.48499 * 109.47160 * 335.41546 * 23 21 19 27 27 C 1.40888 * 119.78669 * 0.52416 * 18 17 16 28 28 C 1.36315 * 119.89788 * 359.72813 * 27 18 17 29 29 H 1.09006 * 109.46751 * 60.00089 * 1 2 3 30 30 H 1.08996 * 109.47205 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47594 * 300.00269 * 1 2 3 32 32 H 1.08999 * 109.47356 * 240.00178 * 2 1 3 33 33 H 1.09006 * 109.47205 * 119.99630 * 2 1 3 34 34 H 1.08992 * 109.48096 * 57.65823 * 6 4 3 35 35 H 1.09002 * 109.48059 * 177.68156 * 6 4 3 36 36 H 1.08993 * 109.47858 * 181.14124 * 8 7 6 37 37 H 1.08997 * 109.48079 * 301.16390 * 8 7 6 38 38 H 1.09004 * 109.60063 * 182.58017 * 9 8 7 39 39 H 1.08999 * 109.45701 * 62.38610 * 9 8 7 40 40 H 0.96998 * 119.99945 * 265.17062 * 12 10 9 41 41 H 1.07998 * 119.94865 * 0.02562 * 16 15 13 42 42 H 1.08007 * 120.05508 * 179.69920 * 17 16 15 43 43 H 0.96998 * 120.00345 * 179.97438 * 22 21 19 44 44 H 1.08001 * 120.04948 * 179.75185 * 27 18 17 45 45 H 1.07999 * 119.94810 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8645 0.6008 -0.5108 6 6 3.9410 1.5079 1.4432 7 8 3.4170 2.6672 2.0942 8 6 3.8083 3.9021 1.4909 9 6 3.2945 3.9517 0.0496 10 6 3.8427 2.7469 -0.7212 11 1 4.9301 2.8073 -0.7670 12 7 3.2945 2.7436 -2.0799 13 6 3.8910 3.4658 -3.0489 14 8 4.8838 4.1205 -2.7955 15 6 3.3388 3.4620 -4.4182 16 6 3.9599 4.2135 -5.4231 17 6 3.4503 4.2180 -6.6874 18 6 2.3031 3.4560 -6.9848 19 6 1.7752 3.4528 -8.2934 20 1 1.8946 4.3200 -8.9259 21 6 1.0955 2.3236 -8.7724 22 7 0.3102 2.4259 -9.8114 23 14 1.3131 0.6732 -7.9250 24 1 0.2142 0.4703 -6.9469 25 1 1.2804 -0.4117 -8.9384 26 1 2.6176 0.6490 -7.2158 27 6 1.6817 2.7014 -5.9702 28 6 2.1956 2.7073 -4.7076 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 3.6141 0.6139 1.9741 35 1 5.0301 1.5524 1.4424 36 1 3.3858 4.7327 2.0563 37 1 4.8956 3.9782 1.4909 38 1 3.6308 4.8726 -0.4270 39 1 2.2050 3.9182 0.0511 40 1 2.5024 2.2215 -2.2819 41 1 4.8416 4.7941 -5.1952 42 1 3.9272 4.8018 -7.4608 43 1 -0.1597 1.6448 -10.1430 44 1 0.7998 2.1190 -6.1925 45 1 1.7202 2.1288 -3.9293 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353237872.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:01:44 Heat of formation + Delta-G solvation = -119.413260 kcal Electronic energy + Delta-G solvation = -27139.663469 eV Core-core repulsion = 23314.421028 eV Total energy + Delta-G solvation = -3825.242441 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.33958 -38.91356 -37.37488 -37.32642 -34.73297 -33.87157 -31.91977 -31.48812 -30.51303 -29.98983 -29.64088 -26.18835 -24.52185 -23.63709 -22.97348 -21.82340 -21.38569 -20.38195 -19.70915 -17.65027 -17.51871 -16.95013 -16.65065 -16.14321 -15.84004 -15.57290 -15.07380 -14.87494 -14.39187 -14.13452 -14.06435 -13.78777 -13.60640 -13.23587 -13.09813 -12.87885 -12.64050 -12.59030 -12.31331 -12.20345 -11.97438 -11.83165 -11.48089 -11.43008 -11.02009 -10.94820 -10.89398 -10.78076 -10.41736 -10.30415 -10.19530 -9.76039 -9.47946 -9.34291 -9.05445 -8.72734 -7.97179 -7.76078 -7.24196 -4.74631 1.98520 2.65625 2.92147 3.05711 3.14883 3.31439 3.52954 3.64835 3.78761 3.83681 4.39869 4.45742 4.62806 4.68818 4.87155 4.94877 5.07526 5.12189 5.15324 5.16542 5.25646 5.28463 5.38856 5.43715 5.57508 5.72833 5.75752 5.77864 5.82314 5.94362 5.97920 6.01331 6.27155 6.41889 6.60286 6.71703 6.80527 6.88794 6.95028 7.11638 7.22523 7.36113 7.51920 7.66502 7.91851 8.08689 8.10046 8.43174 8.52744 8.90900 9.75704 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.016241 B = 0.003542 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.612937 B = 7902.956815 C = 9220.514075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.365 6.365 4 C 0.047 3.953 5 H 0.075 0.925 6 C 0.046 3.954 7 O -0.372 6.372 8 C 0.064 3.936 9 C -0.163 4.163 10 C 0.155 3.845 11 H 0.095 0.905 12 N -0.732 5.732 13 C 0.573 3.427 14 O -0.573 6.573 15 C -0.285 4.285 16 C -0.017 4.017 17 C -0.222 4.222 18 C 0.107 3.893 19 C -0.425 4.425 20 H 0.097 0.903 21 C 0.082 3.918 22 N -0.786 5.786 23 Si 0.916 3.084 24 H -0.267 1.267 25 H -0.288 1.288 26 H -0.241 1.241 27 C -0.248 4.248 28 C -0.035 4.035 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.049 0.951 33 H 0.046 0.954 34 H 0.096 0.904 35 H 0.061 0.939 36 H 0.096 0.904 37 H 0.051 0.949 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.401 0.599 41 H 0.106 0.894 42 H 0.105 0.895 43 H 0.291 0.709 44 H 0.103 0.897 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.057 -6.451 17.808 19.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.023 4.023 3 O -0.284 6.284 4 C -0.012 4.012 5 H 0.093 0.907 6 C -0.032 4.032 7 O -0.290 6.290 8 C -0.013 4.013 9 C -0.202 4.202 10 C 0.049 3.951 11 H 0.113 0.887 12 N -0.384 5.384 13 C 0.368 3.632 14 O -0.454 6.454 15 C -0.289 4.289 16 C -0.036 4.036 17 C -0.241 4.241 18 C 0.104 3.896 19 C -0.451 4.451 20 H 0.115 0.885 21 C -0.140 4.140 22 N -0.408 5.408 23 Si 0.742 3.258 24 H -0.193 1.193 25 H -0.215 1.215 26 H -0.164 1.164 27 C -0.267 4.267 28 C -0.054 4.054 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.114 0.886 35 H 0.079 0.921 36 H 0.114 0.886 37 H 0.069 0.931 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.237 0.763 41 H 0.124 0.876 42 H 0.124 0.876 43 H 0.102 0.898 44 H 0.121 0.879 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.329 -5.906 17.897 18.990 hybrid contribution -0.238 -1.257 -0.226 1.299 sum 2.091 -7.163 17.672 19.182 Atomic orbital electron populations 1.21728 0.93535 1.02187 1.03380 1.22558 0.95893 0.83925 0.99876 1.88007 1.19404 1.26116 1.94872 1.23090 0.83038 0.98630 0.96397 0.90719 1.23017 0.97891 0.89801 0.92532 1.87948 1.74085 1.13550 1.53464 1.22594 0.98797 0.86623 0.93329 1.22546 1.02854 0.99348 0.95413 1.20882 0.98941 0.92971 0.82274 0.88692 1.45866 1.32673 1.51687 1.08197 1.18535 0.82340 0.77438 0.84915 1.90640 1.27055 1.44239 1.83501 1.18901 1.03863 1.13479 0.92689 1.20443 0.96843 0.94291 0.92015 1.20736 0.99024 1.08238 0.96128 1.17857 0.89378 0.89479 0.92928 1.19769 1.25833 1.01620 0.97910 0.88549 1.26367 0.90985 1.02397 0.94291 1.69604 1.17385 1.33340 1.20466 0.86223 0.81885 0.78999 0.78719 1.19264 1.21488 1.16409 1.20691 1.03180 1.09299 0.93540 1.20419 0.93785 0.95361 0.95812 0.91599 0.91214 0.91801 0.93303 0.93556 0.88596 0.92051 0.88603 0.93115 0.90152 0.90063 0.76312 0.87552 0.87639 0.89818 0.87905 0.88846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 10.28 37.16 0.38 -0.93 16 2 C 0.05 0.50 6.47 37.16 0.24 0.74 16 3 O -0.36 -4.31 8.80 -42.60 -0.37 -4.69 16 4 C 0.05 0.52 2.59 -26.59 -0.07 0.45 16 5 H 0.07 0.74 7.79 -51.93 -0.40 0.33 16 6 C 0.05 0.44 6.49 37.20 0.24 0.68 16 7 O -0.37 -4.40 10.70 -42.60 -0.46 -4.86 16 8 C 0.06 0.69 6.84 37.21 0.25 0.95 16 9 C -0.16 -2.12 5.57 -26.59 -0.15 -2.27 16 10 C 0.16 2.09 2.32 -67.74 -0.16 1.94 16 11 H 0.10 1.35 7.58 -51.93 -0.39 0.96 16 12 N -0.73 -11.68 5.00 -54.62 -0.27 -11.96 16 13 C 0.57 11.38 7.73 -12.42 -0.10 11.29 16 14 O -0.57 -12.62 15.99 5.28 0.08 -12.54 16 15 C -0.28 -6.10 5.89 -104.73 -0.62 -6.71 16 16 C -0.02 -0.37 9.52 -39.61 -0.38 -0.75 16 17 C -0.22 -5.08 9.73 -39.27 -0.38 -5.46 16 18 C 0.11 2.60 5.11 -106.80 -0.55 2.05 16 19 C -0.42 -10.79 9.56 -37.75 -0.36 -11.15 16 20 H 0.10 2.55 8.06 -52.49 -0.42 2.13 16 21 C 0.08 2.00 5.40 -17.31 -0.09 1.91 16 22 N -0.79 -19.47 13.92 55.56 0.77 -18.70 16 23 Si 0.92 19.36 24.52 -169.99 -4.17 15.19 16 24 H -0.27 -5.41 6.71 56.52 0.38 -5.03 16 25 H -0.29 -5.84 7.11 56.52 0.40 -5.44 16 26 H -0.24 -5.28 6.87 56.52 0.39 -4.89 16 27 C -0.25 -5.64 7.11 -39.27 -0.28 -5.92 16 28 C -0.03 -0.72 9.47 -39.61 -0.38 -1.09 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.43 8.09 -51.93 -0.42 0.01 16 33 H 0.05 0.37 7.86 -51.93 -0.41 -0.04 16 34 H 0.10 0.78 7.86 -51.93 -0.41 0.37 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.08 1.14 7.84 -51.93 -0.41 0.74 16 40 H 0.40 6.03 6.10 -40.82 -0.25 5.78 16 41 H 0.11 2.25 7.63 -52.49 -0.40 1.85 16 42 H 0.11 2.26 8.06 -52.48 -0.42 1.84 16 43 H 0.29 6.46 8.29 -40.82 -0.34 6.12 16 44 H 0.10 2.29 4.72 -52.49 -0.25 2.04 16 45 H 0.09 1.63 6.37 -52.49 -0.33 1.30 16 LS Contribution 362.93 15.07 5.47 5.47 Total: -1.00 -28.54 362.93 -7.97 -36.51 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -6.65 Total: 9.86 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: -2.38 Total: -14.29 kcal Atomic # 7 Polarization: -31.15 SS G_CDS: 0.50 Total: -30.65 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: -0.75 Total: -22.08 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -4.17 Total: 15.19 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -28.54 -7.97 -36.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353237872.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.901 kcal (2) G-P(sol) polarization free energy of solvation -28.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds