Wall clock time and date at job start Sat Apr 11 2020 00:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.47464 * 2 1 4 4 C 1.52996 * 109.47455 * 239.99729 * 2 1 3 5 5 O 1.42898 * 109.47334 * 175.50930 * 4 2 1 6 6 N 1.46500 * 109.47191 * 119.99627 * 2 1 3 7 7 C 1.46506 * 119.99899 * 55.06397 * 6 2 1 8 8 C 1.53003 * 109.47092 * 273.48885 * 7 6 2 9 9 C 1.53784 * 113.60963 * 271.46377 * 8 7 6 10 10 C 1.53953 * 87.01705 * 220.04746 * 9 8 7 11 11 C 1.53772 * 113.61208 * 173.85943 * 8 7 6 12 12 S 1.65601 * 120.00324 * 235.06720 * 6 2 1 13 13 O 1.42099 * 104.27607 * 199.02166 * 12 6 2 14 14 O 1.42095 * 104.27745 * 326.88227 * 12 6 2 15 15 C 1.81398 * 104.44868 * 82.95025 * 12 6 2 16 16 C 1.53005 * 109.47260 * 187.20543 * 15 12 6 17 17 C 1.52993 * 109.47205 * 179.97438 * 16 15 12 18 18 C 1.50703 * 109.46881 * 179.97438 * 17 16 15 19 19 H 1.08000 * 119.99950 * 0.02562 * 18 17 16 20 20 C 1.37880 * 120.00054 * 179.97438 * 18 17 16 21 21 N 1.31515 * 119.99745 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00116 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47474 * 90.00073 * 22 20 18 24 24 H 1.48505 * 109.47333 * 210.00091 * 22 20 18 25 25 H 1.48494 * 109.47201 * 329.99933 * 22 20 18 26 26 H 1.09001 * 109.47205 * 300.00349 * 1 2 3 27 27 H 1.09000 * 109.46871 * 60.00084 * 1 2 3 28 28 H 1.08993 * 109.47124 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46915 * 295.50942 * 4 2 1 30 30 H 1.08997 * 109.47032 * 55.50850 * 4 2 1 31 31 H 0.96699 * 114.00303 * 179.97438 * 5 4 2 32 32 H 1.08995 * 109.46682 * 33.48417 * 7 6 2 33 33 H 1.08997 * 109.46976 * 153.48936 * 7 6 2 34 34 H 1.09004 * 112.84999 * 42.65975 * 8 7 6 35 35 H 1.08995 * 113.61456 * 334.56903 * 9 8 7 36 36 H 1.09003 * 113.61247 * 105.47472 * 9 8 7 37 37 H 1.09000 * 113.54139 * 270.81240 * 10 9 8 38 38 H 1.08996 * 113.66523 * 139.93218 * 10 9 8 39 39 H 1.09004 * 113.61678 * 254.52501 * 11 8 7 40 40 H 1.09003 * 113.62041 * 25.34590 * 11 8 7 41 41 H 1.08999 * 109.47314 * 307.20407 * 15 12 6 42 42 H 1.09001 * 109.47337 * 67.20827 * 15 12 6 43 43 H 1.09004 * 109.46996 * 300.00633 * 16 15 12 44 44 H 1.09001 * 109.46714 * 59.99903 * 16 15 12 45 45 H 1.08999 * 109.47393 * 299.99879 * 17 16 15 46 46 H 1.09001 * 109.47313 * 60.00333 * 17 16 15 47 47 H 0.97008 * 120.00131 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 8 3.4651 -0.6306 -1.3031 6 7 2.0183 -0.6905 1.1962 7 6 1.5775 -2.0577 1.4841 8 6 0.2621 -2.0158 2.2645 9 6 0.4523 -1.9398 3.7886 10 6 -0.7276 -2.9220 3.9040 11 6 -0.3657 -3.4015 2.4884 12 16 3.0686 0.0742 2.2231 13 8 3.6621 -0.9810 2.9670 14 8 3.8508 0.9011 1.3724 15 6 2.0041 1.0845 3.2893 16 6 2.8723 1.9833 4.1722 17 6 1.9745 2.8358 5.0710 18 6 2.8297 3.7206 5.9410 19 1 3.9059 3.6793 5.8605 20 6 2.2381 4.5836 6.8390 21 7 0.9276 4.6342 6.9366 22 14 3.2981 5.6809 7.9168 23 1 3.5444 6.9694 7.2209 24 1 2.5984 5.9379 9.2012 25 1 4.5942 5.0077 8.1853 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.7439 -1.7696 -1.2098 30 1 1.6125 -0.2561 -2.1373 31 1 3.8583 -1.0675 -2.0709 32 1 1.4276 -2.5957 0.5481 33 1 2.3364 -2.5666 2.0783 34 1 -0.4381 -1.2770 1.8744 35 1 1.4004 -2.3541 4.1314 36 1 0.2440 -0.9547 4.2061 37 1 -1.6988 -2.4306 3.9636 38 1 -0.5896 -3.6834 4.6715 39 1 -1.2335 -3.5949 1.8577 40 1 0.3581 -4.2164 2.4737 41 1 1.3524 1.7023 2.6716 42 1 1.3977 0.4334 3.9190 43 1 3.5241 1.3655 4.7899 44 1 3.4787 2.6344 3.5425 45 1 1.3231 3.4536 4.4529 46 1 1.3677 2.1850 5.7007 47 1 0.5113 5.2417 7.5682 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000439195170.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:03:02 Heat of formation + Delta-G solvation = -116.640308 kcal Electronic energy + Delta-G solvation = -26737.865396 eV Core-core repulsion = 23048.187151 eV Total energy + Delta-G solvation = -3689.678245 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.47431 -37.81203 -36.70307 -35.62002 -35.47216 -34.61429 -32.15349 -31.38127 -28.09992 -27.77461 -26.22751 -25.67983 -23.72265 -23.03378 -21.21042 -20.34383 -19.55171 -18.74379 -17.74086 -17.35630 -16.59594 -16.32579 -15.87426 -15.40848 -15.17271 -14.98299 -14.57815 -14.45540 -14.18556 -13.80217 -13.13046 -13.06573 -12.78907 -12.60817 -12.46717 -12.42803 -12.23900 -11.94776 -11.83427 -11.75320 -11.71042 -11.60904 -11.26538 -11.16193 -10.95575 -10.89811 -10.81130 -10.73753 -10.42956 -10.29747 -10.23526 -10.10384 -9.88753 -9.42087 -9.17520 -8.81877 -8.38269 -6.03387 -4.06060 0.57850 2.81595 3.32182 3.38106 3.42611 3.98453 4.15607 4.38993 4.42763 4.45443 4.56432 4.61936 4.74403 4.77788 4.87043 4.93738 5.14592 5.18804 5.25319 5.26168 5.31845 5.33263 5.35316 5.44088 5.48987 5.55542 5.61043 5.69939 5.79932 5.83554 5.88557 5.95047 6.01589 6.09403 6.24520 6.31690 6.43832 6.52378 6.65402 6.92010 7.54496 7.60074 7.70510 7.94969 8.36070 9.00145 9.58466 11.07856 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.014258 B = 0.003836 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.331802 B = 7298.407180 C = 8326.812359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.148 3.852 3 H 0.102 0.898 4 C 0.068 3.932 5 O -0.556 6.556 6 N -0.989 5.989 7 C 0.127 3.873 8 C -0.144 4.144 9 C -0.156 4.156 10 C -0.139 4.139 11 C -0.131 4.131 12 S 2.596 3.404 13 O -0.963 6.963 14 O -0.948 6.948 15 C -0.618 4.618 16 C -0.104 4.104 17 C 0.032 3.968 18 C -0.525 4.525 19 H 0.058 0.942 20 C 0.058 3.942 21 N -0.896 5.896 22 Si 0.894 3.106 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.273 1.273 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.048 0.952 30 H 0.052 0.948 31 H 0.374 0.626 32 H 0.076 0.924 33 H 0.095 0.905 34 H 0.104 0.896 35 H 0.091 0.909 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.081 0.919 41 H 0.124 0.876 42 H 0.129 0.871 43 H 0.062 0.938 44 H 0.066 0.934 45 H 0.020 0.980 46 H 0.020 0.980 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.112 -16.448 -16.612 23.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.041 3.959 3 H 0.120 0.880 4 C -0.011 4.011 5 O -0.360 6.360 6 N -0.824 5.824 7 C 0.001 3.999 8 C -0.164 4.164 9 C -0.194 4.194 10 C -0.176 4.176 11 C -0.170 4.170 12 S 2.693 3.307 13 O -0.953 6.953 14 O -0.938 6.938 15 C -0.749 4.749 16 C -0.143 4.143 17 C -0.006 4.006 18 C -0.563 4.563 19 H 0.076 0.924 20 C -0.143 4.143 21 N -0.535 5.535 22 Si 0.721 3.279 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.197 1.197 26 H 0.090 0.910 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.220 0.780 32 H 0.095 0.905 33 H 0.113 0.887 34 H 0.122 0.878 35 H 0.110 0.890 36 H 0.091 0.909 37 H 0.097 0.903 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.100 0.900 41 H 0.142 0.858 42 H 0.147 0.853 43 H 0.080 0.920 44 H 0.084 0.916 45 H 0.038 0.962 46 H 0.038 0.962 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.386 -16.155 -15.994 23.152 hybrid contribution -0.294 0.559 0.273 0.688 sum -4.679 -15.596 -15.721 22.633 Atomic orbital electron populations 1.22273 0.94014 1.03067 1.03077 1.20830 0.94089 0.97138 0.83826 0.87989 1.22510 0.82227 0.99273 0.97110 1.86695 1.19256 1.80116 1.49982 1.57634 1.65565 1.23629 1.35552 1.21361 0.95646 0.82580 1.00290 1.23391 0.98074 0.98757 0.96167 1.23302 0.99730 1.00626 0.95706 1.22779 0.98611 0.99171 0.97066 1.22852 1.00355 0.96489 0.97263 1.05501 0.75391 0.75051 0.74741 1.93522 1.74478 1.54073 1.73241 1.93589 1.65943 1.70048 1.64229 1.30761 1.15406 1.14110 1.14579 1.21475 0.98027 0.97306 0.97540 1.19047 0.94324 0.93823 0.93437 1.21268 0.93306 1.21387 1.20388 0.92395 1.25010 0.94980 0.97163 0.97184 1.69962 1.08813 1.37931 1.36784 0.86563 0.80528 0.80913 0.79861 1.20573 1.21186 1.19730 0.90998 0.91363 0.91346 0.93427 0.92971 0.78032 0.90522 0.88689 0.87837 0.89025 0.90860 0.90252 0.91451 0.91649 0.90032 0.85774 0.85309 0.91950 0.91554 0.96190 0.96184 0.92950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.25 7.83 37.16 0.29 -0.96 16 2 C 0.15 1.55 2.78 -67.93 -0.19 1.36 16 3 H 0.10 1.22 7.20 -51.93 -0.37 0.84 16 4 C 0.07 0.61 6.47 37.16 0.24 0.85 16 5 O -0.56 -6.44 13.60 -35.23 -0.48 -6.91 16 6 N -0.99 -12.10 2.59 -107.30 -0.28 -12.37 16 7 C 0.13 1.30 4.85 -4.04 -0.02 1.28 16 8 C -0.14 -1.33 3.36 -89.81 -0.30 -1.63 16 9 C -0.16 -1.73 7.11 -25.83 -0.18 -1.92 16 10 C -0.14 -1.27 8.09 -25.83 -0.21 -1.48 16 11 C -0.13 -1.04 7.64 -25.92 -0.20 -1.24 16 12 S 2.60 42.83 5.36 -107.50 -0.58 42.26 16 13 O -0.96 -17.90 16.41 -57.54 -0.94 -18.84 16 14 O -0.95 -18.59 16.90 -57.54 -0.97 -19.56 16 15 C -0.62 -10.27 6.18 37.16 0.23 -10.04 16 16 C -0.10 -2.21 5.16 -26.73 -0.14 -2.35 16 17 C 0.03 0.83 4.97 -27.88 -0.14 0.69 16 18 C -0.53 -15.04 9.11 -34.44 -0.31 -15.35 16 19 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 20 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 21 N -0.90 -26.79 13.29 55.43 0.74 -26.05 16 22 Si 0.89 21.83 29.54 -169.99 -5.02 16.80 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 26 H 0.07 0.57 7.64 -51.93 -0.40 0.18 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.44 6.46 -51.93 -0.34 0.10 16 29 H 0.05 0.35 6.71 -51.93 -0.35 0.00 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.37 2.46 9.12 45.56 0.42 2.87 16 32 H 0.08 0.63 6.62 -51.93 -0.34 0.28 16 33 H 0.09 1.11 6.46 -51.93 -0.34 0.78 16 34 H 0.10 0.88 5.23 -51.93 -0.27 0.61 16 35 H 0.09 1.10 7.88 -51.93 -0.41 0.69 16 36 H 0.07 0.88 6.31 -51.93 -0.33 0.56 16 37 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.08 0.61 8.10 -51.93 -0.42 0.19 16 41 H 0.12 1.83 8.14 -51.92 -0.42 1.40 16 42 H 0.13 1.97 5.61 -51.92 -0.29 1.68 16 43 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 44 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 45 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 378.85 15.07 5.71 5.71 Total: -1.00 -36.19 378.85 -10.06 -46.26 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -7.21 Total: 1.93 kcal Atomic # 6 Polarization: -28.18 SS G_CDS: -1.03 Total: -29.21 kcal Atomic # 7 Polarization: -38.88 SS G_CDS: 0.46 Total: -38.43 kcal Atomic # 8 Polarization: -42.92 SS G_CDS: -2.40 Total: -45.32 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal Atomic # 16 Polarization: 42.83 SS G_CDS: -0.58 Total: 42.26 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -36.19 -10.06 -46.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439195170.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.383 kcal (2) G-P(sol) polarization free energy of solvation -36.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds