Wall clock time and date at job start Sat Apr 11 2020 00:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.47464 * 2 1 4 4 C 1.52996 * 109.47455 * 239.99729 * 2 1 3 5 5 O 1.42898 * 109.47334 * 175.50930 * 4 2 1 6 6 N 1.46500 * 109.47191 * 119.99627 * 2 1 3 7 7 C 1.46506 * 119.99899 * 55.06397 * 6 2 1 8 8 C 1.53003 * 109.47092 * 273.48885 * 7 6 2 9 9 C 1.53784 * 113.60963 * 271.46377 * 8 7 6 10 10 C 1.53953 * 87.01705 * 220.04746 * 9 8 7 11 11 C 1.53772 * 113.61208 * 173.85943 * 8 7 6 12 12 S 1.65601 * 120.00324 * 235.06720 * 6 2 1 13 13 O 1.42099 * 104.27607 * 199.02166 * 12 6 2 14 14 O 1.42095 * 104.27745 * 326.88227 * 12 6 2 15 15 C 1.81398 * 104.44868 * 82.95025 * 12 6 2 16 16 C 1.53005 * 109.47260 * 187.20543 * 15 12 6 17 17 C 1.52993 * 109.47205 * 179.97438 * 16 15 12 18 18 C 1.50703 * 109.46881 * 179.97438 * 17 16 15 19 19 H 1.08000 * 119.99950 * 0.02562 * 18 17 16 20 20 C 1.37880 * 120.00054 * 179.97438 * 18 17 16 21 21 N 1.31515 * 119.99745 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00116 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47474 * 90.00073 * 22 20 18 24 24 H 1.48505 * 109.47333 * 210.00091 * 22 20 18 25 25 H 1.48494 * 109.47201 * 329.99933 * 22 20 18 26 26 H 1.09001 * 109.47205 * 300.00349 * 1 2 3 27 27 H 1.09000 * 109.46871 * 60.00084 * 1 2 3 28 28 H 1.08993 * 109.47124 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46915 * 295.50942 * 4 2 1 30 30 H 1.08997 * 109.47032 * 55.50850 * 4 2 1 31 31 H 0.96699 * 114.00303 * 179.97438 * 5 4 2 32 32 H 1.08995 * 109.46682 * 33.48417 * 7 6 2 33 33 H 1.08997 * 109.46976 * 153.48936 * 7 6 2 34 34 H 1.09004 * 112.84999 * 42.65975 * 8 7 6 35 35 H 1.08995 * 113.61456 * 334.56903 * 9 8 7 36 36 H 1.09003 * 113.61247 * 105.47472 * 9 8 7 37 37 H 1.09000 * 113.54139 * 270.81240 * 10 9 8 38 38 H 1.08996 * 113.66523 * 139.93218 * 10 9 8 39 39 H 1.09004 * 113.61678 * 254.52501 * 11 8 7 40 40 H 1.09003 * 113.62041 * 25.34590 * 11 8 7 41 41 H 1.08999 * 109.47314 * 307.20407 * 15 12 6 42 42 H 1.09001 * 109.47337 * 67.20827 * 15 12 6 43 43 H 1.09004 * 109.46996 * 300.00633 * 16 15 12 44 44 H 1.09001 * 109.46714 * 59.99903 * 16 15 12 45 45 H 1.08999 * 109.47393 * 299.99879 * 17 16 15 46 46 H 1.09001 * 109.47313 * 60.00333 * 17 16 15 47 47 H 0.97008 * 120.00131 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 8 3.4651 -0.6306 -1.3031 6 7 2.0183 -0.6905 1.1962 7 6 1.5775 -2.0577 1.4841 8 6 0.2621 -2.0158 2.2645 9 6 0.4523 -1.9398 3.7886 10 6 -0.7276 -2.9220 3.9040 11 6 -0.3657 -3.4015 2.4884 12 16 3.0686 0.0742 2.2231 13 8 3.6621 -0.9810 2.9670 14 8 3.8508 0.9011 1.3724 15 6 2.0041 1.0845 3.2893 16 6 2.8723 1.9833 4.1722 17 6 1.9745 2.8358 5.0710 18 6 2.8297 3.7206 5.9410 19 1 3.9059 3.6793 5.8605 20 6 2.2381 4.5836 6.8390 21 7 0.9276 4.6342 6.9366 22 14 3.2981 5.6809 7.9168 23 1 3.5444 6.9694 7.2209 24 1 2.5984 5.9379 9.2012 25 1 4.5942 5.0077 8.1853 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.7439 -1.7696 -1.2098 30 1 1.6125 -0.2561 -2.1373 31 1 3.8583 -1.0675 -2.0709 32 1 1.4276 -2.5957 0.5481 33 1 2.3364 -2.5666 2.0783 34 1 -0.4381 -1.2770 1.8744 35 1 1.4004 -2.3541 4.1314 36 1 0.2440 -0.9547 4.2061 37 1 -1.6988 -2.4306 3.9636 38 1 -0.5896 -3.6834 4.6715 39 1 -1.2335 -3.5949 1.8577 40 1 0.3581 -4.2164 2.4737 41 1 1.3524 1.7023 2.6716 42 1 1.3977 0.4334 3.9190 43 1 3.5241 1.3655 4.7899 44 1 3.4787 2.6344 3.5425 45 1 1.3231 3.4536 4.4529 46 1 1.3677 2.1850 5.7007 47 1 0.5113 5.2417 7.5682 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000439195170.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 00:03:01 Heat of formation + Delta-G solvation = -143.550094 kcal Electronic energy + Delta-G solvation = -26739.032292 eV Core-core repulsion = 23048.187151 eV Total energy + Delta-G solvation = -3690.845141 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.25591 -38.66084 -38.03536 -37.00720 -36.51196 -36.34294 -34.19541 -32.16414 -29.71920 -28.89040 -26.91828 -26.44917 -25.60022 -23.87920 -22.54850 -21.74299 -20.30312 -19.84671 -18.92390 -18.58610 -18.14066 -17.42797 -17.30590 -16.51574 -16.37630 -16.24011 -15.89356 -15.67635 -15.33204 -14.60586 -14.51026 -14.15627 -13.93575 -13.87958 -13.57110 -13.52359 -13.28142 -13.15388 -13.14047 -13.06390 -12.99598 -12.77580 -12.76570 -12.65145 -12.41357 -12.17516 -12.12333 -11.82488 -11.73090 -11.54722 -11.41423 -11.16352 -11.02144 -10.94866 -10.79249 -10.59319 -9.83706 -8.24305 -6.35661 -0.74652 1.38736 1.39760 1.51259 1.67618 2.38604 2.82775 3.08934 3.15125 3.31374 3.60094 3.72382 3.78895 3.83225 3.92642 4.00583 4.08023 4.17332 4.22059 4.34366 4.50225 4.52641 4.56748 4.62305 4.67174 4.71894 4.80319 4.85819 4.89581 4.95128 4.99632 5.00792 5.11733 5.13695 5.19573 5.25071 5.38126 5.41781 5.48219 5.58737 5.70356 5.76392 5.77383 6.17464 6.78904 7.03223 7.33612 8.87245 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.014258 B = 0.003836 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.331802 B = 7298.407180 C = 8326.812359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.135 3.865 3 H 0.081 0.919 4 C 0.066 3.934 5 O -0.593 6.593 6 N -0.978 5.978 7 C 0.123 3.877 8 C -0.138 4.138 9 C -0.175 4.175 10 C -0.139 4.139 11 C -0.118 4.118 12 S 2.613 3.387 13 O -0.988 6.988 14 O -0.981 6.981 15 C -0.616 4.616 16 C -0.103 4.103 17 C 0.035 3.965 18 C -0.555 4.555 19 H 0.058 0.942 20 C 0.005 3.995 21 N -0.928 5.928 22 Si 0.963 3.037 23 H -0.271 1.271 24 H -0.278 1.278 25 H -0.266 1.266 26 H 0.064 0.936 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.392 0.608 32 H 0.109 0.891 33 H 0.078 0.922 34 H 0.116 0.884 35 H 0.075 0.925 36 H 0.055 0.945 37 H 0.084 0.916 38 H 0.067 0.933 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.142 0.858 42 H 0.140 0.860 43 H 0.059 0.941 44 H 0.064 0.936 45 H 0.004 0.996 46 H 0.002 0.998 47 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.103 -17.460 -18.088 25.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.029 3.971 3 H 0.099 0.901 4 C -0.013 4.013 5 O -0.400 6.400 6 N -0.816 5.816 7 C -0.002 4.002 8 C -0.158 4.158 9 C -0.213 4.213 10 C -0.176 4.176 11 C -0.156 4.156 12 S 2.709 3.291 13 O -0.978 6.978 14 O -0.971 6.971 15 C -0.746 4.746 16 C -0.142 4.142 17 C -0.003 4.003 18 C -0.593 4.593 19 H 0.076 0.924 20 C -0.193 4.193 21 N -0.568 5.568 22 Si 0.787 3.213 23 H -0.196 1.196 24 H -0.203 1.203 25 H -0.190 1.190 26 H 0.083 0.917 27 H 0.106 0.894 28 H 0.105 0.895 29 H 0.087 0.913 30 H 0.096 0.904 31 H 0.241 0.759 32 H 0.127 0.873 33 H 0.096 0.904 34 H 0.134 0.866 35 H 0.093 0.907 36 H 0.074 0.926 37 H 0.103 0.897 38 H 0.086 0.914 39 H 0.105 0.895 40 H 0.105 0.895 41 H 0.160 0.840 42 H 0.158 0.842 43 H 0.078 0.922 44 H 0.082 0.918 45 H 0.022 0.978 46 H 0.020 0.980 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.370 -17.170 -17.477 25.082 hybrid contribution -0.022 0.836 0.690 1.084 sum -5.392 -16.334 -16.787 24.035 Atomic orbital electron populations 1.22267 0.91458 1.04489 1.03775 1.21174 0.96125 0.96199 0.83604 0.90093 1.22662 0.81167 1.00543 0.96975 1.86643 1.20951 1.80861 1.51569 1.57307 1.65096 1.24109 1.35100 1.21566 0.95553 0.81294 1.01753 1.23401 0.97821 1.00275 0.94262 1.23381 1.00003 1.00238 0.97668 1.22804 0.97847 0.98628 0.98316 1.22807 1.00987 0.95519 0.96260 1.04695 0.75511 0.74370 0.74482 1.93482 1.75588 1.54569 1.74175 1.93543 1.67518 1.71117 1.64944 1.30720 1.15283 1.14039 1.14577 1.21286 0.97898 0.97494 0.97563 1.18921 0.94322 0.93627 0.93419 1.21719 0.93774 1.22375 1.21384 0.92362 1.25920 0.96344 0.98557 0.98507 1.70071 1.10478 1.38730 1.37548 0.85475 0.78832 0.78945 0.78014 1.19594 1.20321 1.19009 0.91681 0.89381 0.89503 0.91274 0.90439 0.75909 0.87322 0.90387 0.86609 0.90669 0.92601 0.89714 0.91405 0.89473 0.89474 0.83968 0.84222 0.92193 0.91771 0.97802 0.97986 0.92565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.94 7.83 71.98 0.56 -1.37 16 2 C 0.13 2.57 2.78 44.99 0.12 2.70 16 3 H 0.08 1.89 7.20 -2.38 -0.02 1.88 16 4 C 0.07 0.99 6.47 71.98 0.47 1.45 16 5 O -0.59 -12.86 13.60 -148.98 -2.03 -14.88 16 6 N -0.98 -22.85 2.59 -493.39 -1.28 -24.13 16 7 C 0.12 2.28 4.85 86.38 0.42 2.70 16 8 C -0.14 -2.26 3.36 -10.27 -0.03 -2.30 16 9 C -0.18 -3.86 7.11 31.18 0.22 -3.64 16 10 C -0.14 -2.34 8.09 31.18 0.25 -2.08 16 11 C -0.12 -1.51 7.64 31.12 0.24 -1.28 16 12 S 2.61 87.51 5.36 -56.49 -0.30 87.21 16 13 O -0.99 -37.61 16.41 -127.65 -2.09 -39.70 16 14 O -0.98 -39.27 16.90 -127.65 -2.16 -41.43 16 15 C -0.62 -21.01 6.18 71.98 0.44 -20.57 16 16 C -0.10 -4.55 5.16 30.59 0.16 -4.39 16 17 C 0.04 1.90 4.97 29.85 0.15 2.04 16 18 C -0.55 -32.50 9.11 25.60 0.23 -32.26 16 19 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 20 C 0.01 0.30 5.46 84.66 0.46 0.76 16 21 N -0.93 -56.34 13.29 21.45 0.28 -56.06 16 22 Si 0.96 44.94 29.54 68.60 2.03 46.97 16 23 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 24 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 25 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 26 H 0.06 0.89 7.64 -2.39 -0.02 0.87 16 27 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.09 0.74 6.46 -2.39 -0.02 0.72 16 29 H 0.07 0.74 6.71 -2.39 -0.02 0.72 16 30 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.39 4.55 9.12 -74.06 -0.68 3.87 16 32 H 0.11 1.37 6.62 -2.39 -0.02 1.35 16 33 H 0.08 1.77 6.46 -2.39 -0.02 1.75 16 34 H 0.12 1.65 5.23 -2.38 -0.01 1.63 16 35 H 0.07 1.88 7.88 -2.39 -0.02 1.86 16 36 H 0.06 1.39 6.31 -2.39 -0.02 1.37 16 37 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 40 H 0.09 1.05 8.10 -2.39 -0.02 1.03 16 41 H 0.14 4.25 8.14 -2.39 -0.02 4.23 16 42 H 0.14 4.43 5.61 -2.39 -0.01 4.42 16 43 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 44 H 0.06 2.81 8.14 -2.39 -0.02 2.79 16 45 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 46 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 47 H 0.27 15.06 8.31 -92.70 -0.77 14.29 16 Total: -1.00 -79.67 378.85 -1.57 -81.25 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: 0.28 Total: 19.03 kcal Atomic # 6 Polarization: -61.95 SS G_CDS: 3.70 Total: -58.25 kcal Atomic # 7 Polarization: -79.19 SS G_CDS: -1.00 Total: -80.19 kcal Atomic # 8 Polarization: -89.74 SS G_CDS: -6.28 Total: -96.01 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Atomic # 16 Polarization: 87.51 SS G_CDS: -0.30 Total: 87.21 kcal Total: -79.67 -1.57 -81.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439195170.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.304 kcal (2) G-P(sol) polarization free energy of solvation -79.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds